View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19380_low_45 (Length: 375)
Name: NF19380_low_45
Description: NF19380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19380_low_45 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 11 - 354
Target Start/End: Complemental strand, 34765513 - 34765170
Alignment:
| Q |
11 |
ttattctcaacaataatattattaataggttcaatttgaaaatctgtaccaaattttcagaagctaacttttttggatttgagctataacagcttatcca |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34765513 |
ttattctcaacaataatattattaataggttcaatttgaaaatctgtaccaaattttcagaagctaacttttttggatttgagctataacagcttatcca |
34765414 |
T |
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| Q |
111 |
gttgcatgcctcaagagtttggtcatgcaacaagctttacaataagtttgtatttgagctcaaatgaattcacatgtgaaaattattatccgtaaccaca |
210 |
Q |
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| T |
34765413 |
gttgcatgcctcaagagtttggtcatgcaacaagctttacaataagtttgtatttgagctcaaatgaattcacatgtgaaaattattatccgtaaccaca |
34765314 |
T |
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| Q |
211 |
atgagttcattgtcacattcctcgttccaacgcttgatcctctcactctttcaatgcatcaaaccttgaacattgttgttaatatgtactttgaagatat |
310 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34765313 |
atgagttcattgtcacattcctcgttccaacacttgatcctctcactctttcaatgcatcaaaccttgaacattgttgttaatatgtactttgaagatat |
34765214 |
T |
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| Q |
311 |
ttgatttttggtttggaattggctattagaggcaggtcacttta |
354 |
Q |
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| T |
34765213 |
ttgatttttggtttggaattggctattagaggcaggtcacttta |
34765170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 184 - 332
Target Start/End: Original strand, 6440469 - 6440616
Alignment:
| Q |
184 |
atgtgaaaattattatccgtaaccacaatgagttcattgtcacattcctcgttccaacgcttgatcctctcactctttcaatgcatcaaaccttgaacat |
283 |
Q |
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| T |
6440469 |
atgtgaaattcattatcgttaaccacaatgagttcattgtcacattcctcgttccaacatttggtcgtctcactccttcaatgtagcaagtattgaacac |
6440568 |
T |
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| Q |
284 |
tgttgttaatatgtactttgaagatatttgatttttggtttggaattgg |
332 |
Q |
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| T |
6440569 |
tattg-taatgtgcccttcgaagatatttgatttttggtttggaattgg |
6440616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 11 - 175
Target Start/End: Complemental strand, 44015464 - 44015301
Alignment:
| Q |
11 |
ttattctcaacaataatattattaataggttcaatttgaaaatctgtaccaaattttcagaagctaacttttttggatttgagctataacagcttatcca |
110 |
Q |
| |
|
||||||||||||||||| ||||||| ||| ||||| ||||||||| |||| | |||||||||||| ||||||||||||| ||||| |||||||| |
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| T |
44015464 |
ttattctcaacaataat-ttattaacaggctcaataccaaaatctgttagaaatctacagaagctaactcttttggatttgagttataatagcttatctg |
44015366 |
T |
|
| Q |
111 |
gttgcatgcctcaagagtttggtcatgcaacaagctttacaataagtttgtatttgagctcaaat |
175 |
Q |
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|| |||| |||| |||| ||||||||| |||||| | ||||| |||||| |||||||||||||| |
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| T |
44015365 |
gtagcatacctccagagattggtcatgttacaagcctaacaatcagtttggatttgagctcaaat |
44015301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 207 - 282
Target Start/End: Complemental strand, 895501 - 895426
Alignment:
| Q |
207 |
cacaatgagttcattgtcacattcctcgttccaacgcttgatcctctcactctttcaatgcatcaaaccttgaaca |
282 |
Q |
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|||||||| ||||||||||||||| || ||||||| ||| |||||| |||| ||||||||| ||| |||||||| |
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| T |
895501 |
cacaatgaattcattgtcacattcatcattccaacactttctcctcttactccttcaatgcaacaagtcttgaaca |
895426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 207 - 282
Target Start/End: Original strand, 905139 - 905214
Alignment:
| Q |
207 |
cacaatgagttcattgtcacattcctcgttccaacgcttgatcctctcactctttcaatgcatcaaaccttgaaca |
282 |
Q |
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|||||||| ||||||||||||||| || ||||||| ||| |||||| |||| ||||||||| ||| |||||||| |
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| T |
905139 |
cacaatgaattcattgtcacattcatcattccaacactttgtcctcttactccttcaatgcaacaagtcttgaaca |
905214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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