View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19380_low_46 (Length: 375)

Name: NF19380_low_46
Description: NF19380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19380_low_46
NF19380_low_46
[»] chr2 (7 HSPs)
chr2 (4-282)||(40085207-40085502)
chr2 (119-375)||(40059202-40059469)
chr2 (317-375)||(40085140-40085198)
chr2 (4-90)||(40059529-40059615)
chr2 (325-375)||(40077230-40077280)
chr2 (171-208)||(1830152-1830189)
chr2 (171-207)||(42419906-42419942)
[»] chr7 (3 HSPs)
chr7 (220-270)||(35052814-35052864)
chr7 (171-208)||(30812251-30812288)
chr7 (171-208)||(44822071-44822108)
[»] chr3 (6 HSPs)
chr3 (171-208)||(25447165-25447202)
chr3 (171-208)||(29114538-29114575)
chr3 (171-207)||(26911704-26911740)
chr3 (171-206)||(33405114-33405149)
chr3 (220-270)||(53322651-53322700)
chr3 (172-208)||(26990145-26990181)
[»] chr5 (7 HSPs)
chr5 (169-208)||(17369314-17369353)
chr5 (220-270)||(12735614-12735664)
chr5 (220-270)||(12798441-12798491)
chr5 (171-208)||(9107203-9107240)
chr5 (171-208)||(32010058-32010095)
chr5 (171-208)||(32197846-32197883)
chr5 (172-208)||(40111382-40111418)
[»] chr4 (9 HSPs)
chr4 (171-209)||(15173222-15173260)
chr4 (220-270)||(20005958-20006008)
chr4 (171-208)||(22662171-22662208)
chr4 (171-208)||(22666650-22666687)
chr4 (171-208)||(25571372-25571409)
chr4 (171-208)||(27043750-27043787)
chr4 (171-208)||(41336873-41336910)
chr4 (175-207)||(52315118-52315150)
chr4 (176-208)||(52428782-52428814)
[»] chr1 (4 HSPs)
chr1 (220-270)||(14124357-14124407)
chr1 (171-213)||(30257797-30257839)
chr1 (171-208)||(6292605-6292642)
chr1 (170-207)||(17009503-17009540)
[»] chr8 (2 HSPs)
chr8 (171-208)||(14280341-14280378)
chr8 (171-208)||(38602440-38602477)
[»] chr6 (3 HSPs)
chr6 (171-208)||(4308890-4308927)
chr6 (171-208)||(7785664-7785701)
chr6 (171-208)||(30536885-30536922)
[»] scaffold0110 (1 HSPs)
scaffold0110 (166-202)||(33839-33875)


Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 4 - 282
Target Start/End: Complemental strand, 40085502 - 40085207
Alignment:
Q  4 aaaatccatttcatttcaatgaattaagatagcctttcttagcttatagtagatcaagatcatgtttggataaaatacttaattaagtgcttat------ 97  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||          
T  40085502 aaaatccatttcatttcaatgaattaagatagactttcttagcttatagtagatcaagatcatatttggataaaatacttaattaagtgcttataacata 40085403  T
Q  98 -----------tctatttacaaaagattttagagtcatattgttttcatatagttaatatgtttgattatctatcttggagagattatgtcagtagataa 186  Q
               ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  40085402 taagtgcttattctatttacaaaagattttagagtcatattgttttcatatagttaatatgtttcattatctatcttggagagattatgtcagtagataa 40085303  T
Q  187 agtcaaataagtcaatccaaacttgttcagtcatgctttcaataattagcaattcagcttaacatagacacttgttttcttttcctgcaagcaatg 282  Q
    | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40085302 actcaaataagtcaatccaaacttgttcagtcatgctttcaacaattagcaattcagcttaacatagacacttgttttcttttcctgcaagcaatg 40085207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 119 - 375
Target Start/End: Complemental strand, 40059469 - 40059202
Alignment:
Q  119 agtcatattgttttcatatagttaatatgtttgattatctatcttggagagattatgtcagtagataaagtcaaataagtcaatccaaact--------- 209  Q
    |||||||||||||||||||| ||| ||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||              
T  40059469 agtcatattgttttcatataattattat-tttcattatctatcttggagagattatgtcagtagataaactcaaataagtcaatccaaacgagtctaaaa 40059371  T
Q  210 ---tgttcagtcatgctttcaataattagcaattcagcttaacatagacacttgttttcttttcctgcaagcaatgcaaacttttccttcacacatgaac 306  Q
       ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  40059370 atgtgttcagtcatgctttcaacaattagcaattcggcttaacatagacacttgttttctttttctgcaagcaatgcaaacttttccttcacacatgaac 40059271  T
Q  307 aaattcaatacaatgctaaaagaaaatggtaagaatgtgagagaagaaatgaagcaaagagaacctggc 375  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40059270 aaattcaatacaatgctcaaagaaaatggtaagaatgtgagagaagaaatgaagcaaagagaacctggc 40059202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 317 - 375
Target Start/End: Complemental strand, 40085198 - 40085140
Alignment:
Q  317 caatgctaaaagaaaatggtaagaatgtgagagaagaaatgaagcaaagagaacctggc 375  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  40085198 caatgctcaaagaaaatggtaagaatgtaagagaagaaatgaagcaaagagaacctggc 40085140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 40059615 - 40059529
Alignment:
Q  4 aaaatccatttcatttcaatgaattaagatagcctttcttagcttatagtagatcaagatcatgtttggataaaatacttaattaag 90  Q
    |||||||||||||||||| |||||||  |||| |||||| | |||| |||||||||| | |||||||||||||| ||||| ||||||    
T  40059615 aaaatccatttcatttcagtgaattataatagtctttctaaccttacagtagatcaacaccatgtttggataaactactttattaag 40059529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 325 - 375
Target Start/End: Complemental strand, 40077280 - 40077230
Alignment:
Q  325 aaagaaaatggtaagaatgtgagagaagaaatgaagcaaagagaacctggc 375  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  40077280 aaagaaagtggtaaaaatgtgagagaagaaatgaagcaaagagaacctggc 40077230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 1830152 - 1830189
Alignment:
Q  171 ttatgtcagtagataaagtcaaataagtcaatccaaac 208  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  1830152 ttatgtcagtaaataaactcaaataagtcaatccaaac 1830189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 42419906 - 42419942
Alignment:
Q  171 ttatgtcagtagataaagtcaaataagtcaatccaaa 207  Q
    ||||||||| ||||||| |||||||||||||||||||    
T  42419906 ttatgtcagaagataaactcaaataagtcaatccaaa 42419942  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 220 - 270
Target Start/End: Original strand, 35052814 - 35052864
Alignment:
Q  220 tgctttcaataattagcaattcagcttaacatagacacttgttttcttttc 270  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  35052814 tgctttcaacaattagcaattcagcttaacatacacacttgttttcttttc 35052864  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 30812251 - 30812288
Alignment:
Q  171 ttatgtcagtagataaagtcaaataagtcaatccaaac 208  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  30812251 ttatgtcagtaggtaaactcaaataagtcaatccaaac 30812288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 44822071 - 44822108
Alignment:
Q  171 ttatgtcagtagataaagtcaaataagtcaatccaaac 208  Q
    ||||||||| ||||||| ||||||||||||||||||||    
T  44822071 ttatgtcagcagataaactcaaataagtcaatccaaac 44822108  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 25447202 - 25447165
Alignment:
Q  171 ttatgtcagtagataaagtcaaataagtcaatccaaac 208  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  25447202 ttatgtcagtagataaactcaaataagtcaatccaaac 25447165  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 29114538 - 29114575
Alignment:
Q  171 ttatgtcagtagataaagtcaaataagtcaatccaaac 208  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  29114538 ttatgtcagtagataaagtcaaataagtcaatcgaaac 29114575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 26911704 - 26911740
Alignment:
Q  171 ttatgtcagtagataaagtcaaataagtcaatccaaa 207  Q
    ||||||||||||||||| |||||||||||||||||||    
T  26911704 ttatgtcagtagataaactcaaataagtcaatccaaa 26911740  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 206
Target Start/End: Complemental strand, 33405149 - 33405114
Alignment:
Q  171 ttatgtcagtagataaagtcaaataagtcaatccaa 206  Q
    ||||||||||||||||| ||||||||||||||||||    
T  33405149 ttatgtcagtagataaactcaaataagtcaatccaa 33405114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 270
Target Start/End: Complemental strand, 53322700 - 53322651
Alignment:
Q  220 tgctttcaataattagcaattcagcttaacatagacacttgttttcttttc 270  Q
    ||||||||| |||||||||||||| |||| ||| |||||||||||||||||    
T  53322700 tgctttcaacaattagcaattcagattaa-atacacacttgttttcttttc 53322651  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 26990181 - 26990145
Alignment:
Q  172 tatgtcagtagataaagtcaaataagtcaatccaaac 208  Q
    |||||||||||||||  ||||||||||||||||||||    
T  26990181 tatgtcagtagataagctcaaataagtcaatccaaac 26990145  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 208
Target Start/End: Original strand, 17369314 - 17369353
Alignment:
Q  169 gattatgtcagtagataaagtcaaataagtcaatccaaac 208  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  17369314 gattatgtcagtagataagttcaaataagtcaatccaaac 17369353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 270
Target Start/End: Original strand, 12735614 - 12735664
Alignment:
Q  220 tgctttcaataattagcaattcagcttaacatagacacttgttttcttttc 270  Q
    ||||||||| |||||| |||||||||||| ||| || ||||||||||||||    
T  12735614 tgctttcaacaattagaaattcagcttaatatacacgcttgttttcttttc 12735664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 270
Target Start/End: Original strand, 12798441 - 12798491
Alignment:
Q  220 tgctttcaataattagcaattcagcttaacatagacacttgttttcttttc 270  Q
    ||||||||| |||||| |||||||||||| ||| || ||||||||||||||    
T  12798441 tgctttcaacaattagaaattcagcttaatatacacgcttgttttcttttc 12798491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 9107203 - 9107240
Alignment:
Q  171 ttatgtcagtagataaagtcaaataagtcaatccaaac 208  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  9107203 ttatgtcactagataaactcaaataagtcaatccaaac 9107240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 32010058 - 32010095
Alignment:
Q  171 ttatgtcagtagataaagtcaaataagtcaatccaaac 208  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  32010058 ttatgtgagtagataaactcaaataagtcaatccaaac 32010095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 32197846 - 32197883
Alignment:
Q  171 ttatgtcagtagataaagtcaaataagtcaatccaaac 208  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  32197846 ttatgtcagtagataaactcaaaaaagtcaatccaaac 32197883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 40111382 - 40111418
Alignment:
Q  172 tatgtcagtagataaagtcaaataagtcaatccaaac 208  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  40111382 tatgtcagtagataaactcaaataagtcaatcgaaac 40111418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 209
Target Start/End: Complemental strand, 15173260 - 15173222
Alignment:
Q  171 ttatgtcagtagataaagtcaaataagtcaatccaaact 209  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  15173260 ttatgtcagtagataagttcaaataagtcaatccaaact 15173222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 270
Target Start/End: Complemental strand, 20006008 - 20005958
Alignment:
Q  220 tgctttcaataattagcaattcagcttaacatagacacttgttttcttttc 270  Q
    |||||||||||||||| ||||||| || | ||| |||||||||||||||||    
T  20006008 tgctttcaataattagaaattcagtttgatatacacacttgttttcttttc 20005958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 22662208 - 22662171
Alignment:
Q  171 ttatgtcagtagataaagtcaaataagtcaatccaaac 208  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  22662208 ttatgttagtagataaactcaaataagtcaatccaaac 22662171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 22666687 - 22666650
Alignment:
Q  171 ttatgtcagtagataaagtcaaataagtcaatccaaac 208  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  22666687 ttatgttagtagataaactcaaataagtcaatccaaac 22666650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 25571372 - 25571409
Alignment:
Q  171 ttatgtcagtagataaagtcaaataagtcaatccaaac 208  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  25571372 ttatgtcagtagataaactcaaataagccaatccaaac 25571409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 27043787 - 27043750
Alignment:
Q  171 ttatgtcagtagataaagtcaaataagtcaatccaaac 208  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  27043787 ttatgtcagtagataagctcaaataagtcaatccaaac 27043750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 41336873 - 41336910
Alignment:
Q  171 ttatgtcagtagataaagtcaaataagtcaatccaaac 208  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  41336873 ttatgtgagtagataaactcaaataagtcaatccaaac 41336910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 52315150 - 52315118
Alignment:
Q  175 gtcagtagataaagtcaaataagtcaatccaaa 207  Q
    ||||||||||||| |||||||||||||||||||    
T  52315150 gtcagtagataaactcaaataagtcaatccaaa 52315118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 52428782 - 52428814
Alignment:
Q  176 tcagtagataaagtcaaataagtcaatccaaac 208  Q
    |||||||||||| ||||||||||||||||||||    
T  52428782 tcagtagataaactcaaataagtcaatccaaac 52428814  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 270
Target Start/End: Original strand, 14124357 - 14124407
Alignment:
Q  220 tgctttcaataattagcaattcagcttaacatagacacttgttttcttttc 270  Q
    |||||||||||||||| ||||||| || | ||| |||||||||||||||||    
T  14124357 tgctttcaataattagaaattcagtttgatatacacacttgttttcttttc 14124407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 213
Target Start/End: Original strand, 30257797 - 30257839
Alignment:
Q  171 ttatgtcagtagataaagtcaaataagtcaatccaaacttgtt 213  Q
    ||||||||||||||||| |||||||||| |||||||| |||||    
T  30257797 ttatgtcagtagataaactcaaataagtaaatccaaatttgtt 30257839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 6292605 - 6292642
Alignment:
Q  171 ttatgtcagtagataaagtcaaataagtcaatccaaac 208  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  6292605 ttatgtcagtagataagctcaaataagtcaatccaaac 6292642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 207
Target Start/End: Complemental strand, 17009540 - 17009503
Alignment:
Q  170 attatgtcagtagataaagtcaaataagtcaatccaaa 207  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  17009540 attatgtcagtagataaactcaaataagtcaattcaaa 17009503  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 14280378 - 14280341
Alignment:
Q  171 ttatgtcagtagataaagtcaaataagtcaatccaaac 208  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  14280378 ttatgccagtagataaaatcaaataagtcaatccaaac 14280341  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 38602440 - 38602477
Alignment:
Q  171 ttatgtcagtagataaagtcaaataagtcaatccaaac 208  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  38602440 ttatgtcagtagataagctcaaataagtcaatccaaac 38602477  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 4308890 - 4308927
Alignment:
Q  171 ttatgtcagtagataaagtcaaataagtcaatccaaac 208  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  4308890 ttatgtcagtagataaactcaaataagccaatccaaac 4308927  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 7785701 - 7785664
Alignment:
Q  171 ttatgtcagtagataaagtcaaataagtcaatccaaac 208  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  7785701 ttatgtcagtagataaattcaaataagacaatccaaac 7785664  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 30536922 - 30536885
Alignment:
Q  171 ttatgtcagtagataaagtcaaataagtcaatccaaac 208  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  30536922 ttatgtaagtagataaactcaaataagtcaatccaaac 30536885  T

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Target: scaffold0110 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 202
Target Start/End: Complemental strand, 33875 - 33839
Alignment:
Q  166 agagattatgtcagtagataaagtcaaataagtcaat 202  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  33875 agagcttatgtcagtagataaattcaaataagtcaat 33839  T

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