View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19380_low_48 (Length: 372)
Name: NF19380_low_48
Description: NF19380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19380_low_48 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 10 - 350
Target Start/End: Original strand, 33768504 - 33768838
Alignment:
| Q |
10 |
agaagaattgtcatgaaatcaatatcggtgtgcttagaagttcccatagttaattcgggttcagggcatggaggatagtagtgacacaaaagaaattgtc |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33768504 |
agaagaattgtcatgaaatcaatatcggtgtgcttagaagttcccatagttaattcgggttcagggcatggaggatagtagtgacacaaaagaaattgtc |
33768603 |
T |
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| Q |
110 |
catagtctaaggccaaatctttaaggtaagaaggatcaaggcctaaagcttctgagaatagctcaaagattgtcaagcctaaagctcttactttctttga |
209 |
Q |
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||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33768604 |
catagtctaaggccaaatctttaagataagaaggatgaaggcctaaagcttctgagaatagctcaaagattgtcaagcctaaagctcttactttctttga |
33768703 |
T |
|
| Q |
210 |
atattcaatcacaatgtctctgccaatacattatcatctcatcaaagacaaggaaggnnnnnnncattgataagcaatttccaagtgaaattttatactc |
309 |
Q |
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| T |
33768704 |
atattcaatcacaatgtctctgccaatacattatcatctcatcaaagacaaggaa----aaaaacattgataagcaatttccaagtgaaattttatactc |
33768799 |
T |
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| Q |
310 |
tctgaatcatgttaagtgtagtttaaaagcaaaaacttata |
350 |
Q |
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| T |
33768800 |
tctgaatcatgttaagtgtagttt--aagcaaaaacttata |
33768838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 10 - 256
Target Start/End: Original strand, 33761910 - 33762156
Alignment:
| Q |
10 |
agaagaattgtcatgaaatcaatatcggtgtgcttagaagttcccatagttaattcgggttcagggcatggaggatagtagtgacacaaaagaaattgtc |
109 |
Q |
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| T |
33761910 |
agaagaattgtcatgaaatcaatatcggtgtgcttcgaagttcccatagttaattcgggttcagggcatgcaggatagtagtgacacagaagaaattgtc |
33762009 |
T |
|
| Q |
110 |
catagtctaaggccaaatctttaaggtaagaaggatcaaggcctaaagcttctgagaatagctcaaagattgtcaagcctaaagctcttactttctttga |
209 |
Q |
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|||| | || ||| | | |||| |||||||||| ||||||||||||||||||| |||||||||||||||| | ||||||||| |||||||||||||| |
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| T |
33762010 |
catatgttgagagcaattttgtaagataagaaggatgaaggcctaaagcttctgagtatagctcaaagattgtaaggcctaaagcccttactttctttga |
33762109 |
T |
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| Q |
210 |
atattcaatcacaatgtctctgccaatacattatcatctcatcaaag |
256 |
Q |
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| T |
33762110 |
atattcaatcacaatgtctctgccaatgcataatcatctcattaaag |
33762156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 10 - 246
Target Start/End: Original strand, 33771343 - 33771579
Alignment:
| Q |
10 |
agaagaattgtcatgaaatcaatatcggtgtgcttagaagttcccatagttaattcgggttcagggcatggaggatagtagtgacacaaaagaaattgtc |
109 |
Q |
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||||||||||||||||| ||| ||| ||||| || |||| ||||||||||||||| |||||||| ||||||||||||||||||||| || ||| |||| |
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| T |
33771343 |
agaagaattgtcatgaagtcaccatcagtgtgatttgaagctcccatagttaattcaggttcaggacatggaggatagtagtgacacgcaataaaatgtc |
33771442 |
T |
|
| Q |
110 |
catagtctaaggccaaatctttaaggtaagaaggatcaaggcctaaagcttctgagaatagctcaaagattgtcaagcctaaagctcttactttctttga |
209 |
Q |
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||| | ||||||| | ||||||||||||||||| |||||||||||||||||||||| |||||||| ||| ||||||||| ||||||||||||| || |
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| T |
33771443 |
catttggtgaggccaatttcttaaggtaagaaggatccaggcctaaagcttctgagaatatctcaaagaatgtaaagcctaaatctcttactttcttcga |
33771542 |
T |
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| Q |
210 |
atattcaatcacaatgtctctgccaatacattatcat |
246 |
Q |
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| T |
33771543 |
atattcaatcacaatgtctctgccgatacataatcat |
33771579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 232
Target Start/End: Complemental strand, 19845981 - 19845884
Alignment:
| Q |
135 |
gtaagaaggatcaaggcctaaagcttctgagaatagctcaaagattgtcaagcctaaagctcttactttctttgaatattcaatcacaatgtctctgc |
232 |
Q |
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||||||||||||||| |||| || ||||| || | |||||||||| | || |||||| | |||| ||||| |||||||||||||||||| ||||||| |
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| T |
19845981 |
gtaagaaggatcaagtcctactgcctctgacaacaactcaaagattctgaaacctaaatcacttattttctgtgaatattcaatcacaatatctctgc |
19845884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 94
Target Start/End: Complemental strand, 19846064 - 19846022
Alignment:
| Q |
52 |
cccatagttaattcgggttcagggcatggaggatagtagtgac |
94 |
Q |
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| T |
19846064 |
cccatagttaattcaggttcagggcatggcggaaagtagtgac |
19846022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 1094218 - 1094171
Alignment:
| Q |
52 |
cccatagttaattcgggttcagggcatggaggatagtagtgacacaaa |
99 |
Q |
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|||||||||||||| |||||||||||||| |||||| |||||| |||| |
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| T |
1094218 |
cccatagttaattcaggttcagggcatggtggatagaagtgacccaaa |
1094171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 28690663 - 28690708
Alignment:
| Q |
50 |
ttcccatagttaattcgggttcagggcatggaggatagtagtgaca |
95 |
Q |
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| T |
28690663 |
ttcccatagttaattcaggttcaggacatggagggtaatagtgaca |
28690708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 41241081 - 41241025
Alignment:
| Q |
33 |
atcggtgtgcttagaagttcccatagttaattcgggttcagggcatggaggatagta |
89 |
Q |
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||||||||| || | | |||||||||||||||| |||||||||||| | |||||||| |
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| T |
41241081 |
atcggtgtgttttgcaattcccatagttaattctggttcagggcattgtggatagta |
41241025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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