View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19380_low_49 (Length: 369)

Name: NF19380_low_49
Description: NF19380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19380_low_49
NF19380_low_49
[»] chr4 (7 HSPs)
chr4 (16-353)||(19195369-19195706)
chr4 (16-162)||(4299381-4299532)
chr4 (16-92)||(41200205-41200277)
chr4 (49-92)||(48190724-48190767)
chr4 (51-92)||(6418791-6418832)
chr4 (37-78)||(21236418-21236459)
chr4 (94-162)||(31380324-31380391)
[»] chr5 (5 HSPs)
chr5 (9-141)||(22088116-22088248)
chr5 (15-92)||(11744193-11744267)
chr5 (100-138)||(17931541-17931579)
chr5 (59-92)||(36017988-36018021)
chr5 (95-139)||(252752-252796)
[»] chr7 (6 HSPs)
chr7 (17-128)||(33677447-33677563)
chr7 (100-162)||(7424741-7424803)
chr7 (94-162)||(27648203-27648271)
chr7 (111-162)||(44171922-44171973)
chr7 (16-92)||(25296836-25296909)
chr7 (98-154)||(24978817-24978873)
[»] chr2 (2 HSPs)
chr2 (41-167)||(12023709-12023843)
chr2 (16-92)||(38764262-38764335)
[»] chr3 (6 HSPs)
chr3 (47-91)||(24532836-24532880)
chr3 (94-170)||(32324533-32324609)
chr3 (16-92)||(6992058-6992130)
chr3 (16-92)||(34199168-34199240)
chr3 (95-156)||(40606925-40606986)
chr3 (94-162)||(49634452-49634518)
[»] chr1 (4 HSPs)
chr1 (112-170)||(21621816-21621874)
chr1 (17-92)||(50414572-50414643)
chr1 (17-140)||(21629822-21629950)
chr1 (47-79)||(38753630-38753662)
[»] chr8 (1 HSPs)
chr8 (10-88)||(13350222-13350297)
[»] chr6 (2 HSPs)
chr6 (42-92)||(24667045-24667095)
chr6 (97-162)||(22506351-22506416)
[»] scaffold0891 (1 HSPs)
scaffold0891 (39-92)||(3882-3935)


Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 16 - 353
Target Start/End: Complemental strand, 19195706 - 19195369
Alignment:
Q  16 ctcaagtggttaatgagctcatccaccaaatgacgaatcgttcgggagaacccgagttcgattcttgggtggaacaaaaggctatacttacctcacagcc 115  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19195706 ctcaagtggttaatgagctcatccaccaaatgacaaatcgttcgggagaacccgagttcgattcctgggtggaacaaaaggctatacttacctcacagcc 19195607  T
Q  116 gaactccggattaccagggccccttttccctaggaaccggatggttaccacaaaataattgaattcaacttatattaaaagttattatcattcaaaagac 215  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19195606 taactccggattaccagggccccttttccctaggaaccggatggttaccacaaaataattgaattcaacttatattaaaagttattatcattcaaaagac 19195507  T
Q  216 atgattcattacaatatcacctcatctcattgttattatcagtaaaccaacaaaacaagtgggaaacctcactaaaccatccgattatcaaattcaaata 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  19195506 atgattcattacaatatcacctcatctcattgttattatcagtaaaccaacaaaacaagtggaaaacctcactaaaccatccaattatcaaattcaaata 19195407  T
Q  316 tcatcaaccacaattagcacatgaacatgcaataattg 353  Q
    ||||||||||||||||||||||||||||||||||||||    
T  19195406 tcatcaaccacaattagcacatgaacatgcaataattg 19195369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 4299381 - 4299532
Alignment:
Q  16 ctcaagtggttaatgagctcatccaccaaatgacgaatcgttcgggagaacccgagttcgattcttgggtggaacaa--------aaggctatacttacc 107  Q
    |||||||||||||||||||    ||||||| ||||||||| |||||||||| |||||||||||| |||||| |||||         ||||| ||||||||    
T  4299381 ctcaagtggttaatgagctt---caccaaaggacgaatcgctcgggagaacgcgagttcgattcctgggtgtaacaattcttagccaggctttacttacc 4299477  T
Q  108 tcacagccgaactccggattaccagggccccttttccctaggaaccggatggtta 162  Q
    || | || |||| ||||||||| ||||| ||||| |||||||||||||| |||||    
T  4299478 tcgcggctgaacaccggattactagggctcctttcccctaggaaccggagggtta 4299532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 41200205 - 41200277
Alignment:
Q  16 ctcaagtggttaatgagctcatccaccaaatgacgaatcgttcgggagaacccgagttcgattcttgggtggaacaa 92  Q
    ||||||| ||||||||||||   ||||||| |||||||| | |||||||||| |||||||| |||||||||||||||    
T  41200205 ctcaagttgttaatgagctc---caccaaaggacgaatcat-cgggagaacctgagttcgaatcttgggtggaacaa 41200277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 92
Target Start/End: Original strand, 48190724 - 48190767
Alignment:
Q  49 cgaatcgttcgggagaacccgagttcgattcttgggtggaacaa 92  Q
    ||||||||||||||||||||||||| ||||| | ||||||||||    
T  48190724 cgaatcgttcgggagaacccgagtttgattcctaggtggaacaa 48190767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 92
Target Start/End: Complemental strand, 6418832 - 6418791
Alignment:
Q  51 aatcgttcgggagaacccgagttcgattcttgggtggaacaa 92  Q
    |||||||||||||||||||||||| |||| || |||||||||    
T  6418832 aatcgttcgggagaacccgagttcaattcctgtgtggaacaa 6418791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 78
Target Start/End: Complemental strand, 21236459 - 21236418
Alignment:
Q  37 tccaccaaatgacgaatcgttcgggagaacccgagttcgatt 78  Q
    |||||||||||||||| ||| | |||||||||||||||||||    
T  21236459 tccaccaaatgacgaaccgtacaggagaacccgagttcgatt 21236418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 31380391 - 31380324
Alignment:
Q  94 aggctatacttacctcacagccgaactccggattaccagggccccttttccctaggaaccggatggtta 162  Q
    |||||||||||||||||  |||||||||  ||||| ||||| ||| ||||||||||||| ||| |||||    
T  31380391 aggctatacttacctcatggccgaactctagattatcaggggccc-tttccctaggaactggagggtta 31380324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 141
Target Start/End: Original strand, 22088116 - 22088248
Alignment:
Q  9 gattatactcaagtggttaatgagctcatccaccaaatgacgaatcgttcgggagaacccgagttcgattcttgggtggaaca---aaaggctatactta 105  Q
    ||||| |||||||||||||||||||||   | ||||| ||| |||| ||||||| |||||||||| |||||||||||||| ||   |  || || |||||    
T  22088116 gattagactcaagtggttaatgagctc---ccccaaaggacaaatccttcgggaaaacccgagtttgattcttgggtggagcaattattggttagactta 22088212  T
Q  106 cctcacagccgaactccggattaccagggccccttt 141  Q
    |||| | |||||| ||||||||||||||||||||||    
T  22088213 cctcccggccgaaatccggattaccagggccccttt 22088248  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 92
Target Start/End: Complemental strand, 11744267 - 11744193
Alignment:
Q  15 actcaagtggttaatgagctcatccaccaaatgacgaatcgttcgggagaacccgagttcgattcttgggtggaacaa 92  Q
    |||||||||||||||||| ||   ||||||| ||| ||||||||| ||||||||||||| |||||||| |||||||||    
T  11744267 actcaagtggttaatgagttc---caccaaaggacaaatcgttcgtgagaacccgagtttgattcttgagtggaacaa 11744193  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 138
Target Start/End: Original strand, 17931541 - 17931579
Alignment:
Q  100 tacttacctcacagccgaactccggattaccagggcccc 138  Q
    |||||||||||| |||||||||||||||||| |||||||    
T  17931541 tacttacctcacggccgaactccggattaccggggcccc 17931579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 92
Target Start/End: Complemental strand, 36018021 - 36017988
Alignment:
Q  59 gggagaacccgagttcgattcttgggtggaacaa 92  Q
    |||||||||||||||| |||||||||||||||||    
T  36018021 gggagaacccgagttcaattcttgggtggaacaa 36017988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 252796 - 252752
Alignment:
Q  95 ggctatacttacctcacagccgaactccggattaccagggcccct 139  Q
    |||||| ||||||||||  |||||||||||||||| |||||||||    
T  252796 ggctatccttacctcacgaccgaactccggattacaagggcccct 252752  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 128
Target Start/End: Complemental strand, 33677563 - 33677447
Alignment:
Q  17 tcaagtggttaatgagctcatccaccaaatgacgaatcgttcgggagaacccgagttcgattcttgggtggaacaa--------aaggctatacttacct 108  Q
    |||||||||||||||||||   ||||||| || ||||| ||||||||||| |||||||||||| ||||||||| ||          ||||||||||||||    
T  33677563 tcaagtggttaatgagctc---caccaaaggaagaatcattcgggagaacgcgagttcgattcctgggtggaataatttttagtcgggctatacttacct 33677467  T
Q  109 cacagccgaactccggatta 128  Q
    || |||||||||||||||||    
T  33677466 catagccgaactccggatta 33677447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 100 - 162
Target Start/End: Complemental strand, 7424803 - 7424741
Alignment:
Q  100 tacttacctcacagccgaactccggattaccagggccccttttccctaggaaccggatggtta 162  Q
    |||||||||| ||||||||||| |||||| |||||||||||| |||| ||||||||| |||||    
T  7424803 tacttacctcccagccgaactctggattaacagggcccctttcccctgggaaccggagggtta 7424741  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 27648271 - 27648203
Alignment:
Q  94 aggctatacttacctcacagccgaactccggattaccagggccccttttccctaggaaccggatggtta 162  Q
    |||||||||||||| ||| ||||||||||||||||||| |||| | || |||| ||||||||| |||||    
T  27648271 aggctatacttaccccacggccgaactccggattaccaaggcctccttcccctgggaaccggagggtta 27648203  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 162
Target Start/End: Original strand, 44171922 - 44171973
Alignment:
Q  111 cagccgaactccggattaccagggccccttttccctaggaaccggatggtta 162  Q
    ||||||||||||||||||| |||||||| || |||||||||||||| |||||    
T  44171922 cagccgaactccggattactagggcccccttcccctaggaaccggagggtta 44171973  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 25296909 - 25296836
Alignment:
Q  16 ctcaagtggttaatgagctcatccaccaaatgacgaatcgttcgggagaacccgagttcgattcttgggtggaacaa 92  Q
    ||||||||||||||||||||   ||||||| |||||||||||| |||||||  ||||| ||||| | ||||||||||    
T  25296909 ctcaagtggttaatgagctc---caccaaaggacgaatcgttcaggagaacttgagtttgattcctcggtggaacaa 25296836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 24978817 - 24978873
Alignment:
Q  98 tatacttacctcacagccgaactccggattaccagggccccttttccctaggaaccg 154  Q
    ||||||||||||| |||||||||| | ||||||| |||||| || ||||| ||||||    
T  24978817 tatacttacctcaaagccgaactctgaattaccaaggcccccttcccctaagaaccg 24978873  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 167
Target Start/End: Complemental strand, 12023843 - 12023709
Alignment:
Q  41 ccaaatgacgaatcgttcgggagaacccgagttcgattcttgggtggaacaa--------aaggctatacttacctcacagccgaactccggattaccag 132  Q
    ||||| ||||||| ||||||||| ||||||||||||||| ||||||||||||         ||||| |||||||||||   ||||||||| |||||| ||    
T  12023843 ccaaaggacgaattgttcgggaggacccgagttcgattcctgggtggaacaattcttggtcaggctgtacttacctcatgaccgaactccagattactag 12023744  T
Q  133 ggccccttttccctaggaaccggatggttaccaca 167  Q
     ||||| || |||||||||| ||| ||||| ||||    
T  12023743 agcccccttcccctaggaactggagggttaacaca 12023709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 38764335 - 38764262
Alignment:
Q  16 ctcaagtggttaatgagctcatccaccaaatgacgaatcgttcgggagaacccgagttcgattcttgggtggaacaa 92  Q
    ||||||||||||||||||||   |||| || || ||||  ||||||||||||||| ||||||||||||||| |||||    
T  38764335 ctcaagtggttaatgagctc---cacccaaagatgaataattcgggagaacccgaattcgattcttgggtgcaacaa 38764262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 47 - 91
Target Start/End: Original strand, 24532836 - 24532880
Alignment:
Q  47 gacgaatcgttcgggagaacccgagttcgattcttgggtggaaca 91  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||    
T  24532836 gacgaattgttcgggagaacccgagttcgattcttgggtgaaaca 24532880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 94 - 170
Target Start/End: Complemental strand, 32324609 - 32324533
Alignment:
Q  94 aggctatacttacctcacagccgaactccggattaccagggccccttttccctaggaaccggatggttaccacaaaa 170  Q
    ||||| |||||||||| | ||| ||||||||||||| ||||||||||| ||| |||||| ||| ||||| |||||||    
T  32324609 aggctttacttacctcccggccaaactccggattactagggcccctttccccaaggaactggagggttaacacaaaa 32324533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 6992058 - 6992130
Alignment:
Q  16 ctcaagtggttaatgagctcatccaccaaatgacgaatcgttcgggagaacccgagttcgattcttgggtggaacaa 92  Q
    ||||||||| |||||||||    ||||||| ||||||| |||| |||||||| ||||||||||| ||||||||||||    
T  6992058 ctcaagtggataatgagctt---caccaaaggacgaattgttccggagaacc-gagttcgattcctgggtggaacaa 6992130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 34199240 - 34199168
Alignment:
Q  16 ctcaagtggttaatgagctcatccaccaaatgacgaatcgttcgggagaacccgagttcgattcttgggtggaacaa 92  Q
    ||||||| ||||||||||||   ||||||| ||||||||||| |||||||| ||| |||||||| || |||||||||    
T  34199240 ctcaagtagttaatgagctc---caccaaaggacgaatcgtttgggagaactcga-ttcgattcctgtgtggaacaa 34199168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 156
Target Start/End: Original strand, 40606925 - 40606986
Alignment:
Q  95 ggctatacttacctcacagccgaactccggattaccagggccccttttccctaggaaccgga 156  Q
    |||| |||||||||| | |||||||||| |||||| |||||| | || ||||||||||||||    
T  40606925 ggctttacttacctctcggccgaactccagattactagggccacattcccctaggaaccgga 40606986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 162
Target Start/End: Original strand, 49634452 - 49634518
Alignment:
Q  94 aggctatacttacctcacagccgaactccggattaccagggccccttttccctaggaaccggatggtta 162  Q
    ||||||| |||||||||  ||| ||||||||||||||| |||||| ||||||| ||||||||| |||||    
T  49634452 aggctatccttacctcaaggccaaactccggattaccaaggcccc-tttccct-ggaaccggagggtta 49634518  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 170
Target Start/End: Complemental strand, 21621874 - 21621816
Alignment:
Q  112 agccgaactccggattaccagggccccttttccctaggaaccggatggttaccacaaaa 170  Q
    |||||||||||||||||| ||||||| |||||| |||||| |||| ||||| |||||||    
T  21621874 agccgaactccggattactagggccctttttccgtaggaatcggagggttaacacaaaa 21621816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 50414643 - 50414572
Alignment:
Q  17 tcaagtggttaatgagctcatccaccaaatgacgaatcgttcgggagaacccgagttcgattcttgggtggaacaa 92  Q
    ||||||||| |||||||||   ||||||| ||||||| |||| ||||||||||||||| |||| ||||||||||||    
T  50414643 tcaagtggtcaatgagctc---caccaaa-gacgaattgttcaggagaacccgagttcaattcctgggtggaacaa 50414572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 140
Target Start/End: Original strand, 21629822 - 21629950
Alignment:
Q  17 tcaagtggttaatgagctcatccaccaaatgacgaatcgttcgggagaacccgagttcgattcttgggtggaacaa--------aaggctatacttacct 108  Q
    ||||||||||||||||    ||||||||| |||||| | ||||||| |||||||||| ||||| | ||||||||||         | |||||||||||||    
T  21629822 tcaagtggttaatgag---ttccaccaaaggacgaaacattcgggataacccgagtttgattcataggtggaacaatttttggtcaagctatacttacct 21629918  T
Q  109 cacagccgaactccggattaccagggcccctt 140  Q
    ||||| | | ||| ||||||||||||||||||    
T  21629919 cacagaccatctctggattaccagggcccctt 21629950  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 79
Target Start/End: Original strand, 38753630 - 38753662
Alignment:
Q  47 gacgaatcgttcgggagaacccgagttcgattc 79  Q
    |||||| ||||||||||||||||||||||||||    
T  38753630 gacgaaacgttcgggagaacccgagttcgattc 38753662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 88
Target Start/End: Original strand, 13350222 - 13350297
Alignment:
Q  10 attatactcaagtggttaatgagctcatccaccaaatgacgaatcgttcgggagaacccgagttcgattcttgggtgga 88  Q
    ||||| |||||||||||||||| |||   ||||||| |||||| || |||||||||||| |||| ||||| ||||||||    
T  13350222 attatgctcaagtggttaatgaactc---caccaaaagacgaaccgctcgggagaaccctagtttgattcctgggtgga 13350297  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 92
Target Start/End: Original strand, 24667045 - 24667095
Alignment:
Q  42 caaatgacgaatcgttcgggagaacccgagttcgattcttgggtggaacaa 92  Q
    |||| ||||||| |||| |||||||| |||||| |||||||||||||||||    
T  24667045 caaaggacgaattgttcaggagaacctgagttcaattcttgggtggaacaa 24667095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 162
Target Start/End: Original strand, 22506351 - 22506416
Alignment:
Q  97 ctatacttacctcacagccgaactccggattaccagggccccttttccctaggaaccggatggtta 162  Q
    |||| |||||||||| |||||||||||| |||| |||| |||||| | || ||||||||| |||||    
T  22506351 ctatccttacctcactgccgaactccgggttactagggaccctttccactgggaaccggagggtta 22506416  T

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Target: scaffold0891 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0891
Description:

Target: scaffold0891; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 3882 - 3935
Alignment:
Q  39 caccaaatgacgaatcgttcgggagaacccgagttcgattcttgggtggaacaa 92  Q
    ||||||||||| ||||||| ||||||||| || ||| |||||||| ||||||||    
T  3882 caccaaatgacaaatcgtttgggagaaccagaattcaattcttggatggaacaa 3935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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