View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19380_low_5 (Length: 699)
Name: NF19380_low_5
Description: NF19380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19380_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 630; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 9 - 685
Target Start/End: Complemental strand, 52630934 - 52630255
Alignment:
| Q |
9 |
agcaaaggagagacgattgcggtggttcgaccagcgtcggccaatgacgtggcaagggtagttaaagcggcgtataaatggcagaagt---ttgcggtgt |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
52630934 |
agcaaaggagagacgattgcggtggttcgaccagcgtcggccaatgacgtggcaagggtagttaaagcggcgtataaatggcagcagtactttgcggtgt |
52630835 |
T |
|
| Q |
106 |
cagcgagaggacacggacactcaataaacggacaagcagatacagggatgaaaggagtggtgattgaaatgggaaaaggaggtgtaggaattaagggtcc |
205 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52630834 |
cagcgagaggacacggacactcaataaacggacaagcggatacaaggatgaaaggagtggtgattgaaatgggaaaaggaggtgtaggaattaagggtcc |
52630735 |
T |
|
| Q |
206 |
tctaatttgggagaaagaaatgtatgtggatgtttggggtggtgaattatggatacatgttctgaagtcaacattggagtatgggttagcacctatgtct |
305 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
52630734 |
tctagtttgggagaaagaaatgtatgtggatgtttggggtggtgaattatggatacatgttctgaaggcaacattggagtatgggttagcacctatgtct |
52630635 |
T |
|
| Q |
306 |
tggactgattacttgtatttgtctgtgggtggtactctatctaatggtggtattagtggccaaaccttcaatcacggtcctcaaatctccaatgtttttg |
405 |
Q |
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| T |
52630634 |
tggactgattacttgtatttgtctgtgggtggtactctatctaatggtggtattagtggccaaaccttcaatcacggtcctcaaatctccaatgtttttg |
52630535 |
T |
|
| Q |
406 |
agctagatgtagttacaggtacttaataataagttaattgcttgctacttaattaatcattgctataaaatgcattcttcattctcccactgtcctagta |
505 |
Q |
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| T |
52630534 |
agctagatgtagttacaggtatttaataataagttaattgcttgctacttaattaatcactactataaaatgcattcttcattctcccactgtcctagta |
52630435 |
T |
|
| Q |
506 |
ctgttctcaaattggtatgtcatggtgtgtgtacttgtgtattaatataggaaagggtgaggtgttgacgtgttcagaagatcgtaattcagacttgttc |
605 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52630434 |
ctgttctcaaattggtatgtcatggtatgtgtacttgtgtattaatataggaaagggtgaggtgttgacgtgttcagaagatcgtaattcagacttgttc |
52630335 |
T |
|
| Q |
606 |
cattctgttcttggtggtcttggacaatttggaatcatcacaagagctagaattgctcttcaaccagctccacaaagagt |
685 |
Q |
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| T |
52630334 |
cattctgttcttggtggtcttggacaatttggaatcatcacaagagctagaattgctcttcaaccagctccacaaagagt |
52630255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 303 - 374
Target Start/End: Complemental strand, 52454641 - 52454570
Alignment:
| Q |
303 |
tcttggactgattacttgtatttgtctgtgggtggtactctatctaatggtggtattagtggccaaaccttc |
374 |
Q |
| |
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| T |
52454641 |
tcttggactgattatttgtatttatcggttggtggaactctctctaatgctggtattagtggacaaaccttc |
52454570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 303 - 370
Target Start/End: Original strand, 17243437 - 17243504
Alignment:
| Q |
303 |
tcttggactgattacttgtatttgtctgtgggtggtactctatctaatggtggtattagtggccaaac |
370 |
Q |
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||||||||||||||||||||||||||||| ||||| ||||| ||||||| ||| ||| | |||||||| |
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| T |
17243437 |
tcttggactgattacttgtatttgtctgttggtggcactctctctaatgctggaattgggggccaaac |
17243504 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 611 - 673
Target Start/End: Original strand, 35830413 - 35830475
Alignment:
| Q |
611 |
tgttcttggtggtcttggacaatttggaatcatcacaagagctagaattgctcttcaaccagc |
673 |
Q |
| |
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||||||||| || ||||| |||||||| |||||||| |||||||||||| ||||| ||||||| |
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| T |
35830413 |
tgttcttggagggcttggtcaatttggcatcatcactagagctagaatttctcttgaaccagc |
35830475 |
T |
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