View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19380_low_52 (Length: 351)
Name: NF19380_low_52
Description: NF19380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19380_low_52 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 5e-84; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 60 - 249
Target Start/End: Original strand, 7545502 - 7545689
Alignment:
| Q |
60 |
ttttataagcactatgttgaagcacctcaaaatatatgttacaaatgtaacatacttttgttaattatgtttttgacttttgttgtttgtatttagagat |
159 |
Q |
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| T |
7545502 |
ttttataagcactatgttgaagcacctcaaaatat--gttacaaatgtaacatacttttgttaattatgtttttgacttttgttgtttgtatttagagat |
7545599 |
T |
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| Q |
160 |
ctataaataaactatatcagatgtaggtaatcttagaaatctaaggaatgtacaagtgaaacannnnnnnagggatgtagaagtgaaaca |
249 |
Q |
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| T |
7545600 |
ctataaataaactatatcagatgtaggtaatcttagaaatctaaggaatgtacaagtgaaacatttttttagggatgtagaagtgaaaca |
7545689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 258 - 334
Target Start/End: Original strand, 7545722 - 7545798
Alignment:
| Q |
258 |
agagatccgataaagttatgagaatatagagacaattcatgtcaaaattggttagaagcaattaatgaagatataca |
334 |
Q |
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| T |
7545722 |
agagatccgataaagttatgagaatatagagacaattcatgtcaaaattggttagaagcaattaacgaagatataca |
7545798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 7545430 - 7545478
Alignment:
| Q |
13 |
aatatacaatgtctgtactaactgagctaagttcacaggaactattctt |
61 |
Q |
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| T |
7545430 |
aatatgcaatgtttgtactaactgaactaagttcacaggaactattctt |
7545478 |
T |
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