View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19380_low_55 (Length: 342)

Name: NF19380_low_55
Description: NF19380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19380_low_55
NF19380_low_55
[»] chr1 (4 HSPs)
chr1 (16-328)||(48066240-48066552)
chr1 (69-280)||(48062204-48062415)
chr1 (66-327)||(48099235-48099496)
chr1 (69-197)||(48105839-48105967)
[»] chr4 (2 HSPs)
chr4 (51-230)||(50230944-50231123)
chr4 (254-328)||(50231118-50231192)
[»] scaffold1463 (2 HSPs)
scaffold1463 (36-156)||(1147-1267)
scaffold1463 (254-330)||(1021-1096)


Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 16 - 328
Target Start/End: Original strand, 48066240 - 48066552
Alignment:
Q  16 gtttcttttacttctatgactaagcagaagttattacttttaaagtttaggaaatacctgatttggattagaatccacactactttcagtgagccatata 115  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48066240 gtttcttttacttctatgaccaagcagaagttattacttttaaagtttaggaaatacctgatttggattagaatccacactactttcagtgagccatata 48066339  T
Q  116 ggaagtccagttgcaccaagaagatctagacctgacctcatgtaagcaatgtttggcacgccgcgtgaaaaatggccttgcacccctatagtcaataaca 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48066340 ggaagtccagttgcaccaagaagatctagacctgacctcatgtaagcaatgtttggcacgccgcgtgaaaaatggccttgcacccctatagtcaataaca 48066439  T
Q  216 ttccagtagtgcctggaaattgttgaatctccttaagcttcctgatataattgggtgggctggcaacttggtctggactgaattcaatggtgttaaactc 315  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  48066440 ttccagtagtgcctggaaattgttgaatctgcttaagtttcctgatataattgggtgggctggcaacttggtctggactgaattcaatggtgttaaattc 48066539  T
Q  316 attcataaacatg 328  Q
    |||||||||||||    
T  48066540 attcataaacatg 48066552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 69 - 280
Target Start/End: Original strand, 48062204 - 48062415
Alignment:
Q  69 atacctgatttggattagaatccacactactttcagtgagccatataggaagtccagttgcaccaagaagatctagacctgacctcatgtaagcaatgtt 168  Q
    ||||||||||||| | || |||||||||  |||| ||||||||||||||||||||||||||  |||||||||| |||||||||||||| || ||||||||    
T  48062204 atacctgatttggctgaggatccacactggtttctgtgagccatataggaagtccagttgctgcaagaagatcaagacctgacctcatatatgcaatgtt 48062303  T
Q  169 tggcacgccgcgtgaaaaatggccttgcacccctatagtcaataacattccagtagtgcctggaaattgttgaatctccttaagcttcctgatataattg 268  Q
    ||||||||| | |||||||||||  |||| |||||| | |||| | ||||||| | | |||||||| || ||||||||||||||||||| ||||||||||    
T  48062304 tggcacgccacttgaaaaatggcactgcaaccctatggccaatgatattccagcatttcctggaaactgctgaatctccttaagcttccggatataattg 48062403  T
Q  269 ggtgggctggca 280  Q
    | ||||||||||    
T  48062404 gttgggctggca 48062415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 66 - 327
Target Start/End: Original strand, 48099235 - 48099496
Alignment:
Q  66 gaaatacctgatttggattagaatccacactactttcagtgagccatataggaagtccagttgcaccaagaagatctagacctgacctcatgtaagcaat 165  Q
    |||||||||||||||| | || ||  |||||  |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||      
T  48099235 gaaatacctgatttggttgaggattgacacttgtttctgtgagccatataggaagtccagttgcaccaagaagatctagacttgacctcatgtaagcata 48099334  T
Q  166 gtttggcacgccgcgtgaaaaatggccttgcacccctatagtcaataacattccagtagtgcctggaaattgttgaatctccttaagcttcctgatataa 265  Q
    ||||||    ||  ||  |||||||||||||||||| || | |||| | ||||||| ||| ||||||||| | |||||||||||||| ||||||||||||    
T  48099335 gtttggtcgaccaagtctaaaatggccttgcaccccaatggccaatgatattccagcagttcctggaaatcgctgaatctccttaagtttcctgatataa 48099434  T
Q  266 ttgggtgggctggcaacttggtctggactgaattcaatggtgttaaactcattcataaacat 327  Q
    || ||||||||| | ||  | |||  |||  ||||||||||||||||||||||||| |||||    
T  48099435 ttaggtgggctgactacccgatctccacttgattcaatggtgttaaactcattcatgaacat 48099496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 69 - 197
Target Start/End: Original strand, 48105839 - 48105967
Alignment:
Q  69 atacctgatttggattagaatccacactactttcagtgagccatataggaagtccagttgcaccaagaagatctagacctgacctcatgtaagcaatgtt 168  Q
    ||||||||||||| | || ||||| |||   ||| ||||||||||| |||| |||| |   |||||||| ||||||||||||||||||||||||||  ||    
T  48105839 atacctgatttggctgaggatccaaactggcttctgtgagccatattggaaatccaatattaccaagaaaatctagacctgacctcatgtaagcaagatt 48105938  T
Q  169 tggcacgccgcgtgaaaaatggccttgca 197  Q
    ||||  ||| | || ||||||||||||||    
T  48105939 tggctggccacttgcaaaatggccttgca 48105967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 51 - 230
Target Start/End: Original strand, 50230944 - 50231123
Alignment:
Q  51 acttttaaagtttaggaaatacctgatttggattagaatccacactactttcagtgagccatataggaagtccagttgcaccaagaagatctagacctga 150  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  50230944 acttttaaagtataggaaatacctgatttggattagaatccacactactttcagtgagccatataggaagtccagttgcaccaagatgatctagacctga 50231043  T
Q  151 cctcatgtaagcaatgtttggcacgccgcgtgaaaaatggccttgcacccctatagtcaataacattccagtagtgcctg 230  Q
    ||||||||||||||||||||||| ||||| ||| |||||||||||||||| ||||| ||||| |||||||||||| ||||    
T  50231044 cctcatgtaagcaatgtttggcatgccgcttgacaaatggccttgcacccatatagccaatagcattccagtagttcctg 50231123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 254 - 328
Target Start/End: Original strand, 50231118 - 50231192
Alignment:
Q  254 ttcctgatataattgggtgggctggcaacttggtctggactgaattcaatggtgttaaactcattcataaacatg 328  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||    
T  50231118 ttcctgatataattggctgggctggcaacttggtcttgactgaattcaatggtgttaaacacgttcataaacatg 50231192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1463 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: scaffold1463
Description:

Target: scaffold1463; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 36 - 156
Target Start/End: Complemental strand, 1267 - 1147
Alignment:
Q  36 taagcagaagttattacttttaaagtttaggaaatacctgatttggattagaatccacactactttcagtgagccatataggaagtccagttgcaccaag 135  Q
    |||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  1267 taagcataagttattacttttaaagtataggaaataccagatttggattagaatccacactactttcagtgagccatataggaagttcagttgcaccaag 1168  T
Q  136 aagatctagacctgacctcat 156  Q
        |||||||||||| ||||    
T  1167 ctagtctagacctgacttcat 1147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1463; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 254 - 330
Target Start/End: Complemental strand, 1096 - 1021
Alignment:
Q  254 ttcctgatataattgggtgggctggcaacttggtctggactgaattcaatggtgttaaactcattcataaacatgat 330  Q
    ||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  1096 ttcctgatataat-ggctgggctggcaacttggtgtggactgaattcaatggtgttaaacacattcataaacatgat 1021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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