View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19380_low_56 (Length: 325)

Name: NF19380_low_56
Description: NF19380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19380_low_56
NF19380_low_56
[»] chr8 (3 HSPs)
chr8 (4-216)||(9891545-9891757)
chr8 (212-309)||(9891792-9891879)
chr8 (22-104)||(17220198-17220280)
[»] chr4 (11 HSPs)
chr4 (2-194)||(3671048-3671240)
chr4 (24-187)||(52982885-52983048)
chr4 (22-161)||(54860810-54860949)
chr4 (22-176)||(55657369-55657523)
chr4 (22-187)||(55619009-55619173)
chr4 (22-187)||(55626313-55626477)
chr4 (22-168)||(54630369-54630515)
chr4 (241-309)||(3670914-3670982)
chr4 (22-178)||(55637265-55637421)
chr4 (23-155)||(55663621-55663753)
chr4 (64-175)||(50189997-50190108)
[»] chr2 (1 HSPs)
chr2 (22-204)||(13403672-13403854)
[»] chr1 (1 HSPs)
chr1 (68-193)||(37308569-37308694)
[»] chr7 (1 HSPs)
chr7 (68-153)||(46153223-46153308)


Alignment Details
Target: chr8 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 4 - 216
Target Start/End: Original strand, 9891545 - 9891757
Alignment:
Q  4 gaaaaaccccggttacatgggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcagagtcatgacaac 103  Q
    |||||||||||||||||  ||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  9891545 gaaaaaccccggttacacaggagatgtcaacttgtatgctctgatgatagaggacgctgagggattggaaaagattgaaaacttgcagagtcatgacaac 9891644  T
Q  104 tgtgaaatttgtgagaaggctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgctacctccaggcaatggttctcaacctggtttta 203  Q
    | |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  9891645 tatgaaatttatgggaaggctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgccatctccaggcaatggttctcaacctggtttta 9891744  T
Q  204 actttagaagcag 216  Q
    |||||||| ||||    
T  9891745 actttagaggcag 9891757  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 212 - 309
Target Start/End: Original strand, 9891792 - 9891879
Alignment:
Q  212 agcagaatgtgaccattgttgcaaggaaccaaggaaccatgacgagtggtttctttgatgccagcttggattctatcctttattgagtcgtagttttt 309  Q
    |||||||||||||||||||||||||||||          |||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||    
T  9891792 agcagaatgtgaccattgttgcaaggaacg---------tgacgagtggtttctttgatgc-agcttggattctatcctttattaagttgtagttttt 9891879  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 104
Target Start/End: Original strand, 17220198 - 17220280
Alignment:
Q  22 gggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcagagtcatgacaact 104  Q
    |||||||||||||| ||||||||  |||||||| || || | |||||||||||||||||| ||| |||||| |||||||||||    
T  17220198 gggagatgtcaacttgtatgctcaaatgatagaagatgctgagggattggaaaagattgataacatgcagaatcatgacaact 17220280  T

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Target: chr4 (Bit Score: 165; Significance: 3e-88; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 2 - 194
Target Start/End: Complemental strand, 3671240 - 3671048
Alignment:
Q  2 gagaaaaaccccggttacatgggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcagagtcatgaca 101  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||    
T  3671240 gagaaaaaccccggttacacgggagatgtcaacttgtatgctctgatgataggggacgcggagggattggaaaagattggaaacttgcagagtcatgaca 3671141  T
Q  102 actgtgaaatttgtgagaaggctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgctacctccaggcaatggttctcaac 194  Q
    ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3671140 actatgaaatttatgagaaggctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgctacctccaggcaatggttctcaac 3671048  T

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Target: chr4; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 24 - 187
Target Start/End: Complemental strand, 52983048 - 52982885
Alignment:
Q  24 gagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaaggc 123  Q
    |||||||||| | |||||||| |||||||||||| || | ||||||||||||||||||||||||||||||||||||||||  |||||||| |||||| ||    
T  52983048 gagatgtcaatttgtatgctcagatgatagaggatgctgagggattggaaaagattgaaaacttgcagagtcatgacaacaatgaaatttatgagaatgc 52982949  T
Q  124 tgtcaaaattcttgagacatattggttggaagatgaaggtgagacgctacctccaggcaatggt 187  Q
    ||| | |||||| ||||||||||||||||||||||||| |||||| ||||||||| || |||||    
T  52982948 tgttagaattctcgagacatattggttggaagatgaagatgagacactacctccaagccatggt 52982885  T

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Target: chr4; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 54860949 - 54860810
Alignment:
Q  22 gggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaag 121  Q
    |||||||||||||| |||||||| |||||||||||| || | |||||||||||||||||| ||| |||||| ||||||||||| |||||||| |||||||    
T  54860949 gggagatgtcaacttgtatgctcagatgatagaggatgctgagggattggaaaagattgataacatgcagaatcatgacaactatgaaatttatgagaag 54860850  T
Q  122 gctgtcaaaattcttgagacatattggttggaagatgaag 161  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  54860849 gctgttaaaattcttgagacatattggttggaagatgaag 54860810  T

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Target: chr4; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 22 - 176
Target Start/End: Complemental strand, 55657523 - 55657369
Alignment:
Q  22 gggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaag 121  Q
    |||||||||||||| |||||||| ||||||||| || |  | ||||||||||||||| ||||||||||||||||||||||||  |||||||| |||||||    
T  55657523 gggagatgtcaacttgtatgctcagatgatagatgatgttgagggattggaaaagatcgaaaacttgcagagtcatgacaacaatgaaatttatgagaag 55657424  T
Q  122 gctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgctacctc 176  Q
    ||||| |||||||||||||||||||||||||||||||  | |||||| |||||||    
T  55657423 gctgttaaaattcttgagacatattggttggaagatgttgatgagacactacctc 55657369  T

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Target: chr4; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 22 - 187
Target Start/End: Complemental strand, 55619173 - 55619009
Alignment:
Q  22 gggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaag 121  Q
    |||||||||||||| |||||||| ||||||||| || || | |||||||||||| || ||||||||||||||||||||||||   ||||||| |||||||    
T  55619173 gggagatgtcaacttgtatgctcagatgatagatgatgctgagggattggaaaa-atcgaaaacttgcagagtcatgacaacaaagaaatttatgagaag 55619075  T
Q  122 gctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgctacctccaggcaatggt 187  Q
    ||||| |||||||| |||||||||||||||||||||| || |||||| ||||||| |||| |||||    
T  55619074 gctgttaaaattctcgagacatattggttggaagatgtagatgagacactacctctaggccatggt 55619009  T

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Target: chr4; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 22 - 187
Target Start/End: Complemental strand, 55626477 - 55626313
Alignment:
Q  22 gggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaag 121  Q
    |||||||||||||| |||||||| ||||||||| || || | |||||||||||| || ||||||||||||||||||||||||   ||||||| |||||||    
T  55626477 gggagatgtcaacttgtatgctcagatgatagatgatgctgagggattggaaaa-atcgaaaacttgcagagtcatgacaacaaagaaatttatgagaag 55626379  T
Q  122 gctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgctacctccaggcaatggt 187  Q
    ||||| |||||||| |||||||||||||||||||||| || |||||| ||||||| |||| |||||    
T  55626378 gctgttaaaattctcgagacatattggttggaagatgtagatgagacactacctctaggccatggt 55626313  T

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Target: chr4; HSP #7
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 22 - 168
Target Start/End: Original strand, 54630369 - 54630515
Alignment:
Q  22 gggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaag 121  Q
    |||||||||||| | |||||||| |||||||||||| |    ||||||||||||||||||||||||| | ||||||||  || | ||||||| |||||||    
T  54630369 gggagatgtcaatttgtatgctcagatgatagaggatgttaagggattggaaaagattgaaaacttggatagtcatgaagacagagaaatttatgagaag 54630468  T
Q  122 gctgtcaaaattcttgagacatattggttggaagatgaaggtgagac 168  Q
    ||||  |||||||| |||| |||||||||||||||||||| ||||||    
T  54630469 gctgctaaaattctcgagagatattggttggaagatgaagatgagac 54630515  T

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Target: chr4; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 241 - 309
Target Start/End: Complemental strand, 3670982 - 3670914
Alignment:
Q  241 caaggaaccatgacgagtggtttctttgatgccagcttggattctatcctttattgagtcgtagttttt 309  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3670982 caaggaactgtgacgagtggtttctttgatgccagcttggattctatcctttattgagtcgtagttttt 3670914  T

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Target: chr4; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 22 - 178
Target Start/End: Original strand, 55637265 - 55637421
Alignment:
Q  22 gggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaag 121  Q
    |||||||||||||| ||||| || |||||||   ||||| |  || | || | |||||||||||||||||||||||||||||  ||||||| ||||||||    
T  55637265 gggagatgtcaacttgtatgttcagatgatacctgacgctgacggttgggtagagattgaaaacttgcagagtcatgacaacaatgaaattcgtgagaag 55637364  T
Q  122 gctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgctacctcca 178  Q
    ||||| ||||||||||| |||||||||||  |||||||||  |||||  ||||||||    
T  55637365 gctgttaaaattcttgaaacatattggtttaaagatgaagacgagacagtacctcca 55637421  T

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Target: chr4; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 23 - 155
Target Start/End: Complemental strand, 55663753 - 55663621
Alignment:
Q  23 ggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaagg 122  Q
    ||||||||||||| |||||||| ||||||||| || |  | |||||||||||||||||||||||||||||||||  || ||  |||||||| ||||||||    
T  55663753 ggagatgtcaacttgtatgctcagatgatagatgatgttgagggattggaaaagattgaaaacttgcagagtcacaaccacattgaaatttatgagaagg 55663654  T
Q  123 ctgtcaaaattcttgagacatattggttggaag 155  Q
    |||| | |||  | |||||||||||||||||||    
T  55663653 ctgttagaatcgtcgagacatattggttggaag 55663621  T

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Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 175
Target Start/End: Complemental strand, 50190108 - 50189997
Alignment:
Q  64 gggattggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaaggctgtcaaaattcttgagacatattggttggaagatgaaggt 163  Q
    |||||| || ||||| |||||| |||| |||||||| |||   ||||| | |||||||||||| ||||||||||| |||||||||| | | ||||||| |    
T  50190108 gggatttgacaagatagaaaacctgcaaagtcatgataaccaagaaatatatgagaaggctgttaaaattcttgaaacatattggtcgaacgatgaagat 50190009  T
Q  164 gagacgctacct 175  Q
    |||| |||||||    
T  50190008 gagatgctacct 50189997  T

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Target: chr2 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 22 - 204
Target Start/End: Original strand, 13403672 - 13403854
Alignment:
Q  22 gggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaag 121  Q
    |||||||||||||| |||||||| ||||||||| || |||| |||||||||||||||||| ||| |||||||||||||||||  ||||||||  ||||||    
T  13403672 gggagatgtcaacttgtatgctcagatgatagatgaggcggagggattggaaaagattgagaacctgcagagtcatgacaacaatgaaatttacgagaag 13403771  T
Q  122 gctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgctacctccaggcaatggttctcaacctggttttaa 204  Q
    ||||| |||||||| |||||||||||||||||||||||||  ||||| ||||| |||||| ||||||||||||||||||||||    
T  13403772 gctgttaaaattctcgagacatattggttggaagatgaagacgagacactaccaccaggcgatggttctcaacctggttttaa 13403854  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 193
Target Start/End: Complemental strand, 37308694 - 37308569
Alignment:
Q  68 ttggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaaggctgtcaaaattcttgagacatattggttggaagatgaaggtgaga 167  Q
    ||||| || ||||| ||| | |||||||||||||||   || |||| ||| |||||||| || |||||||||||||| |||||||| || |||| |||||    
T  37308694 ttggagaaaattgagaacctccagagtcatgacaacacagagatttatgaaaaggctgtgaagattcttgagacatactggttggaggaagaagatgaga 37308595  T
Q  168 cgctacctccaggcaatggttctcaa 193  Q
    |  | ||||||||| ||| |||||||    
T  37308594 ccatgcctccaggcgatgcttctcaa 37308569  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 153
Target Start/End: Complemental strand, 46153308 - 46153223
Alignment:
Q  68 ttggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaaggctgtcaaaattcttgagacatattggttgga 153  Q
    ||||| || ||||| ||| | |||||||||||||||  ||| |||| ||| |||||||| || ||||| |||||||| ||||||||    
T  46153308 ttggagaaaattgagaacctccagagtcatgacaacaatgagatttatgaaaaggctgtgaagattctcgagacatactggttgga 46153223  T

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