View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19380_low_58 (Length: 317)
Name: NF19380_low_58
Description: NF19380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19380_low_58 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 47654129 - 47653823
Alignment:
| Q |
1 |
accaatgatctaggattacgagatcaaaaatcacatctccatataaaatctcaatgcattgggtatatgagtcttctcttgtatatatccgacattaaat |
100 |
Q |
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||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||| |
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| T |
47654129 |
accaacgatctaggattacgagatcaaaaatcatgtctccatataaaatctcaatgcattgagtatatgagtcttctcttgcatatatctgacattaaat |
47654030 |
T |
|
| Q |
101 |
tcattcatatgttgatacgagactaatcactcacacttgaagtcaacaatcttccctcaagtgtggagctatatccaatacttgcatcaccattattacc |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
47654029 |
tcattcatatgttgatacgagactaatcactcacacttgaagtcaacaatcttccctcaagtgtggacctatatccaatacttgcatcaccattattacc |
47653930 |
T |
|
| Q |
201 |
ggcataataacatgtctcctgactacactaacatgaagacttttgtagcaagtccaaacattgagatattcaatttcgctctctcaccaattaaaacttg |
300 |
Q |
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|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
47653929 |
ggcataataacatgtcttctgactacactaacatgaagacttttgtagcaagtccaaacattgagatattcactttcgctctctcgccaattaaaacttg |
47653830 |
T |
|
| Q |
301 |
gcctttg |
307 |
Q |
| |
|
||||||| |
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|
| T |
47653829 |
gcctttg |
47653823 |
T |
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