View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19380_low_61 (Length: 303)

Name: NF19380_low_61
Description: NF19380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19380_low_61
NF19380_low_61
[»] chr4 (1 HSPs)
chr4 (15-303)||(21383994-21384287)


Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 15 - 303
Target Start/End: Original strand, 21383994 - 21384287
Alignment:
Q  15 agatgaaggagttaaagaggacccttatattcaaaagtttacgatgaagatgtgcagtcaaatcatttgattttttaaaatgaaactggtt-taacctat 113  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  21383994 agatgagggagttaaagaggacccttatatccaaaagtttacgatgaagatatgcagtcaaatcatttgattttttagaatgaaactggttataacctat 21384093  T
Q  114 aatcgggaggtaaataatgtctaatcaataattatttttgtcagagttcaaacttcagaaactctattcgaaat----ttaattaatcacttgatatact 209  Q
    |||| |||||||||||| ||||||||||||||| |||  |||||||||||||||| ||||||||||||| ||||    ||||| ||||||||||||||||    
T  21384094 aatcaggaggtaaataacgtctaatcaataattgtttccgtcagagttcaaactttagaaactctattcaaaatttgattaatcaatcacttgatatact 21384193  T
Q  210 ccattcacttgattaaattggtcaatttgttttaattagtaaaaaataattaagaaaat-aagatattttgtggaagaaaataatctagtttata 303  Q
     |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  21384194 -cattcacttgattaaattggtcaatttgttttaagtagtaaaatataattaagaaaataaagatattttgtggaagaaaataatctagtttata 21384287  T

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