View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19380_low_64 (Length: 270)
Name: NF19380_low_64
Description: NF19380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19380_low_64 |
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| [»] scaffold1463 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 48066637 - 48066899
Alignment:
| Q |
1 |
tggacattctcgttcacaacgtcccatgcaatcaattgtccactatatcttgaaacaacagatttcattctttttgcagccgcttctcgtaattcttcag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48066637 |
tggacattctcgttcacaacgtcccatgcaattaattgtccactatatcttgaaaccacagatttcattctttttgcagccgcttctcgtaattcttcag |
48066736 |
T |
|
| Q |
101 |
gagatagggacttcacccattggggctgaaatctttcatcgttccacaaaatggcatgacctctgacagaaatgccattttctttggcaaatttcagcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48066737 |
gagatagggacttcacccattggggctgaaatctttcatcgtcccacaaaatggcatgacctctgacagaaatgccattttctttggcaaatttcagcat |
48066836 |
T |
|
| Q |
201 |
ggcatcaggaatagtatagttttcctggccttgaattttctctgtactataccacttcttctc |
263 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
48066837 |
ggcatcaggaatagtatagttttcctggccttgaattttctctgtactataccacttcatctc |
48066899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 48099582 - 48099844
Alignment:
| Q |
1 |
tggacattctcgttcacaacgtcccatgcaatcaattgtccactatatcttgaaacaacagatttcattctttttgcagccgcttctcgtaattcttcag |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |||||| ||||| |||||||| |||||| | ||||||||||||||||||| |||||||||||||| |
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| T |
48099582 |
tggacattctcattcacaacgtcccatgcaatcagttgtcctctataccttgaaaccacagatcttattctttttgcagccgcttttcgtaattcttcag |
48099681 |
T |
|
| Q |
101 |
gagatagggacttcacccattggggctgaaatctttcatcgttccacaaaatggcatgacctctgacagaaatgccattttctttggcaaatttcagcat |
200 |
Q |
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|||||||| |||| ||||||| |||||||| ||||||||| ||| |||| || ||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
48099682 |
gagataggaacttaacccatttaggctgaaaagtttcatcgtcccagaaaacggtatgacctctgacagaaatgccattttctttggcgaatttcatcat |
48099781 |
T |
|
| Q |
201 |
ggcatcaggaatagtatagttttcctggccttgaattttctctgtactataccacttcttctc |
263 |
Q |
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|||||| || ||||||||||||||||||||||||| | |||||||||||||||||||| |||| |
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| T |
48099782 |
ggcatctgggatagtatagttttcctggccttgaaatctctctgtactataccacttcatctc |
48099844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 48062548 - 48062810
Alignment:
| Q |
1 |
tggacattctcgttcacaacgtcccatgcaatcaattgtccactatatcttgaaacaacagatttcattctttttgcagccgcttctcgtaattcttcag |
100 |
Q |
| |
|
||||||||||| || || ||||||||||||||||||||||| |||| ||||| || || |||||||||||||||||||| |||||||||||||| |||| |
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| T |
48062548 |
tggacattctcatttaccacgtcccatgcaatcaattgtcctttataccttgagaccacggatttcattctttttgcagctgcttctcgtaattcatcag |
48062647 |
T |
|
| Q |
101 |
gagatagggacttcacccattggggctgaaatctttcatcgttccacaaaatggcatgacctctgacagaaatgccattttctttggcaaatttcagcat |
200 |
Q |
| |
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|||| |||||| |||||| || ||| ||||||| || |||||||||| ||||||||||||||| ||||||||||| || |||||||||||||| |
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| T |
48062648 |
gagacagggacaaatcccattcaggttgacgtctttcactgtcccacaaaatgttatgacctctgacagatatgccattttccttagcaaatttcagcat |
48062747 |
T |
|
| Q |
201 |
ggcatcaggaatagtatagttttcctggccttgaattttctctgtactataccacttcttctc |
263 |
Q |
| |
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|||||| || |||||||||||||| |||||||| |||||||||||||||||||||||| |||| |
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| T |
48062748 |
ggcatctgggatagtatagttttcatggccttggattttctctgtactataccacttcatctc |
48062810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 48106183 - 48106436
Alignment:
| Q |
1 |
tggacattctcgttcacaacgtcccatgcaatcaattgtccactatatcttgaaacaacagatttcattctttttgcagccgcttctcgtaattcttcag |
100 |
Q |
| |
|
|||||||| || ||||| || |||||||||||||||| ||| |||| ||| ||||||||||| ||||||||| || |||| || ||||| || | |
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| T |
48106183 |
tggacattttcattcaccacatcccatgcaatcaattctcctttataccttttaacaacagattcgattctttttttcgcggctttgcgcaattcatcgg |
48106282 |
T |
|
| Q |
101 |
gagatagggacttcacccattggggctgaaatctttcatcgttccacaaaatggcatgacctctgacagaaatgccattttctttggcaaatttcagcat |
200 |
Q |
| |
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| |||| |||| ||||||| || ||| || ||||||||| ||| |||||| |||||||||||||||||| ||||| ||||| ||||||| | ||| |
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| T |
48106283 |
gcgataaatacttaacccattcaggttgatatttttcatcgtcccagaaaatgttatgacctctgacagaaattccattatctttagcaaattctaacat |
48106382 |
T |
|
| Q |
201 |
ggcatcaggaatagtatagttttcctggccttgaattttctctgtactatacca |
254 |
Q |
| |
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||||| | ||||| |||||||| |||||| ||||| | |||||||||||||| |
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| T |
48106383 |
tgcatctgagatagtgtagttttcttggcctggaattatttctgtactatacca |
48106436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1463 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: scaffold1463
Description:
Target: scaffold1463; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 955 - 849
Alignment:
| Q |
1 |
tggacattctcgttcacaacgtcccatgcaatcaattgtccactatatcttgaaacaacagatttcattctttttgcagccgcttctcgtaattcttcag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
955 |
tggacattctcgttcacaacgtcccatgcaatcaattgtccactatatcttgaaaccacagatttcattctttttgcagccgcttctcgtaattcttcag |
856 |
T |
|
| Q |
101 |
gagatag |
107 |
Q |
| |
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||||||| |
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| T |
855 |
gagatag |
849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 50231277 - 50231389
Alignment:
| Q |
1 |
tggacattctcgttcacaacgtcccatgcaatcaattgtccactatatcttgaaacaacagatttcattctttttgcagccgcttctcgtaattcttcag |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||| |
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| T |
50231277 |
tggacattctcgtttacaacgtcccatgcaatcaattgtccactatatcttgaaaccaaaaatttcattctttttgcagccgcttctcgtaattcttcag |
50231376 |
T |
|
| Q |
101 |
gagatagggactt |
113 |
Q |
| |
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||||||||||||| |
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|
| T |
50231377 |
gagatagggactt |
50231389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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