View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19380_low_67 (Length: 254)
Name: NF19380_low_67
Description: NF19380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19380_low_67 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 25741480 - 25741227
Alignment:
| Q |
1 |
atgagacttgattccatatttttacacatgcaaacgaaacaacaaaggtgatacatcaaacaatgacagagtatttgacatcaacatccaaagaatgaat |
100 |
Q |
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| T |
25741480 |
atgagacttgattccatatttttacacatgcaaatgaaataacaaaggtgatacatcaaacaatgacagagtatttgacatcaacatccaaagaatgaat |
25741381 |
T |
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| Q |
101 |
gattacagaacacaccaggtttaattcacacttaacaatcaaattcaaacgccggcgcctnnnnnnngtaggtgagaagtgcccagacggggtagactaa |
200 |
Q |
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| T |
25741380 |
gattacagaacacaccaggtttaattcacacttaacaatcaaattcaaacgccggcgcctaaaaaaagtaggtgagaagtgcccagacggggtagactaa |
25741281 |
T |
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| Q |
201 |
cagaagaattatgccaacggaatttgatacgccatttgctttagtgaaggagtt |
254 |
Q |
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| T |
25741280 |
tagaagaattatgccaacggaatttgatacgccatttgctttagtgaaggagtt |
25741227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 4 - 254
Target Start/End: Complemental strand, 25745011 - 25744761
Alignment:
| Q |
4 |
agacttgattccatatttttacacatgcaaacgaaacaacaaaggtgatacatcaaacaatgacagagtatttgacatcaacatccaaagaatgaatgat |
103 |
Q |
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| T |
25745011 |
agacttgattccatatttttacacatgcaaactaaataacaaatgtgatacatcaaacaatgaccgagtatttgacatcaacatctaacaaatgaatgat |
25744912 |
T |
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| Q |
104 |
tacagaacacaccaggtttaattcacacttaacaatcaaattcaaacgccggcgcctnnnnnnngtaggtgagaagtgcccagacggggtagactaacag |
203 |
Q |
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| T |
25744911 |
tacagaacacaacagatttcattcacacttaacaatcaaattcaatcaccggcacctaaaaaagtatggtgaggagtgcccagatggggtagactaacag |
25744812 |
T |
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| Q |
204 |
aagaattatgccaacggaatttgatacgccatttgctttagtgaaggagtt |
254 |
Q |
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| T |
25744811 |
aagaattatgccaatggaatttgatacgccatttgctctagtgaaggagtt |
25744761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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