View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19380_low_68 (Length: 253)

Name: NF19380_low_68
Description: NF19380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19380_low_68
NF19380_low_68
[»] chr8 (14 HSPs)
chr8 (17-149)||(42801498-42801632)
chr8 (184-236)||(42801445-42801497)
chr8 (2-53)||(94458-94509)
chr8 (2-53)||(11875958-11876009)
chr8 (2-53)||(11890965-11891016)
chr8 (2-53)||(34413134-34413185)
chr8 (3-53)||(8034359-8034409)
chr8 (3-53)||(29170838-29170888)
chr8 (20-53)||(11710374-11710407)
chr8 (1-53)||(257610-257662)
chr8 (1-53)||(658258-658310)
chr8 (1-53)||(843994-844046)
chr8 (17-53)||(34472384-34472420)
chr8 (17-53)||(35818146-35818182)
[»] chr1 (10 HSPs)
chr1 (3-53)||(42848686-42848736)
chr1 (2-53)||(16526124-16526175)
chr1 (2-53)||(32589436-32589487)
chr1 (2-53)||(43884866-43884917)
chr1 (16-53)||(5863058-5863095)
chr1 (4-53)||(7191106-7191155)
chr1 (16-53)||(11356840-11356877)
chr1 (1-42)||(43667915-43667956)
chr1 (17-53)||(6213508-6213544)
chr1 (17-53)||(40375262-40375298)
[»] scaffold0085 (1 HSPs)
scaffold0085 (2-53)||(27877-27928)
[»] chr7 (6 HSPs)
chr7 (2-53)||(3766883-3766934)
chr7 (2-53)||(44616674-44616725)
chr7 (3-53)||(34051822-34051872)
chr7 (17-53)||(12615838-12615874)
chr7 (17-53)||(28424278-28424314)
chr7 (17-53)||(42547975-42548011)
[»] chr6 (5 HSPs)
chr6 (2-53)||(22574942-22574993)
chr6 (3-53)||(216279-216329)
chr6 (2-50)||(10934671-10934719)
chr6 (17-53)||(24618446-24618482)
chr6 (17-53)||(28222949-28222985)
[»] chr4 (14 HSPs)
chr4 (2-53)||(626929-626980)
chr4 (2-53)||(3847753-3847804)
chr4 (2-53)||(18360565-18360616)
chr4 (2-53)||(36132301-36132352)
chr4 (2-53)||(36602313-36602364)
chr4 (3-53)||(30057295-30057345)
chr4 (3-53)||(56087901-56087951)
chr4 (4-53)||(9761189-9761238)
chr4 (2-50)||(1457968-1458016)
chr4 (17-53)||(8965181-8965217)
chr4 (17-53)||(17447136-17447172)
chr4 (17-53)||(37310114-37310150)
chr4 (3-43)||(37318093-37318133)
chr4 (2-50)||(47890767-47890815)
[»] chr3 (7 HSPs)
chr3 (2-53)||(10349472-10349523)
chr3 (3-53)||(4860234-4860284)
chr3 (3-53)||(4880242-4880292)
chr3 (3-53)||(32429820-32429870)
chr3 (4-53)||(45512942-45512991)
chr3 (3-43)||(11436577-11436617)
chr3 (17-53)||(15975355-15975391)
[»] chr2 (5 HSPs)
chr2 (2-53)||(13773472-13773523)
chr2 (2-53)||(36182714-36182765)
chr2 (3-53)||(5112798-5112848)
chr2 (20-53)||(2289700-2289733)
chr2 (20-52)||(7907491-7907523)
[»] scaffold0199 (1 HSPs)
scaffold0199 (17-53)||(8861-8897)
[»] scaffold0038 (1 HSPs)
scaffold0038 (17-53)||(23447-23483)
[»] chr5 (2 HSPs)
chr5 (17-53)||(18756073-18756109)
chr5 (17-53)||(22931564-22931600)


Alignment Details
Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 149
Target Start/End: Complemental strand, 42801632 - 42801498
Alignment:
Q  17 ttaaattgtgtgagttctaaccactagcctacttgacnnnnnnnnnncactt--gttttagactagcaaaatatacagataattcctataatattttgat 114  Q
    ||||||||||||||||||||||||||| |||||||||          |||||  |||||| |||||||||||||||||||||||||||| ||||| ||||    
T  42801632 ttaaattgtgtgagttctaaccactagactacttgacaaaaaaaaaacacttatgttttaaactagcaaaatatacagataattcctatgatattgtgat 42801533  T
Q  115 acaatttgttctcttaatctcttgtattcgaatgt 149  Q
    |||||||||||||||||||||||||||||||||||    
T  42801532 acaatttgttctcttaatctcttgtattcgaatgt 42801498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 42801497 - 42801445
Alignment:
Q  184 aatactgcagtgtaatcaatatttcggatcccctcaaaattaccaatttaatt 236  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  42801497 aatactgcaatataatcaatatttcggatcccctcaaaattaccaatttaatt 42801445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 94509 - 94458
Alignment:
Q  2 tccacttctcctcttttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    ||||||||||| |  |||||||||||||| |||||||||||| |||||||||    
T  94509 tccacttctccacaattaaattgtgtgagctctaaccactaggctacttgac 94458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 11875958 - 11876009
Alignment:
Q  2 tccacttctcctcttttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    ||||||||||| |  |||||||||||||| |||||||||||| |||||||||    
T  11875958 tccacttctccacaattaaattgtgtgagctctaaccactaggctacttgac 11876009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 11890965 - 11891016
Alignment:
Q  2 tccacttctcctcttttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    ||||||||||| |  |||||||||||||| |||||||||||| |||||||||    
T  11890965 tccacttctccacaattaaattgtgtgagctctaaccactaggctacttgac 11891016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 34413134 - 34413185
Alignment:
Q  2 tccacttctcctcttttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    ||||||||||| |  |||||||||||||| |||||||||||| |||||||||    
T  34413134 tccacttctccacaattaaattgtgtgagctctaaccactaggctacttgac 34413185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 8034409 - 8034359
Alignment:
Q  3 ccacttctcctcttttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    |||||||||| |  ||||||||||||||||||| ||||||| |||||||||    
T  8034409 ccacttctccacaattaaattgtgtgagttctagccactaggctacttgac 8034359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 29170838 - 29170888
Alignment:
Q  3 ccacttctcctcttttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    |||||||||| |  ||||||||||||||||||| ||||||| |||||||||    
T  29170838 ccacttctccacaattaaattgtgtgagttctagccactagactacttgac 29170888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 11710374 - 11710407
Alignment:
Q  20 aattgtgtgagttctaaccactagcctacttgac 53  Q
    |||||||||||||||||||||||| |||||||||    
T  11710374 aattgtgtgagttctaaccactaggctacttgac 11710407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 257610 - 257662
Alignment:
Q  1 ttccacttctcctcttttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    |||||||||||| |  |||||||||||||| |||| ||||||| |||||||||    
T  257610 ttccacttctccacaattaaattgtgtgagctctagccactaggctacttgac 257662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 658310 - 658258
Alignment:
Q  1 ttccacttctcctcttttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    |||||||||||| |  |||||||||||||| |||| ||||||| |||||||||    
T  658310 ttccacttctccacaattaaattgtgtgagctctagccactaggctacttgac 658258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 844046 - 843994
Alignment:
Q  1 ttccacttctcctcttttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    |||||||||||| |  |||||||||||||| |||| ||||||| |||||||||    
T  844046 ttccacttctccacaattaaattgtgtgagctctagccactaggctacttgac 843994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 34472384 - 34472420
Alignment:
Q  17 ttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    |||||||||||||| |||||||||||| |||||||||    
T  34472384 ttaaattgtgtgagctctaaccactagactacttgac 34472420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 35818146 - 35818182
Alignment:
Q  17 ttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    |||||||||||||| |||||||||||| |||||||||    
T  35818146 ttaaattgtgtgagctctaaccactaggctacttgac 35818182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 42848736 - 42848686
Alignment:
Q  3 ccacttctcctcttttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    |||||||||| |  ||||||||||||||||||||||||||| |||||||||    
T  42848736 ccacttctccgcaattaaattgtgtgagttctaaccactagactacttgac 42848686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 16526175 - 16526124
Alignment:
Q  2 tccacttctcctcttttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    ||||||||||| |  |||||||||||||| |||||||||||| |||||||||    
T  16526175 tccacttctccacaattaaattgtgtgagctctaaccactaggctacttgac 16526124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 32589487 - 32589436
Alignment:
Q  2 tccacttctcctcttttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    ||||||||||| |  |||||||||||||| |||||||||||| |||||||||    
T  32589487 tccacttctccacaattaaattgtgtgagctctaaccactaggctacttgac 32589436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 43884866 - 43884917
Alignment:
Q  2 tccacttctcctcttttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    ||||||||||| |  ||||||||||||||||||| ||||||| |||||||||    
T  43884866 tccacttctccacaattaaattgtgtgagttctagccactagactacttgac 43884917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 5863058 - 5863095
Alignment:
Q  16 tttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  5863058 tttaaaatgtgtgagttctaaccactagactacttgac 5863095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 7191106 - 7191155
Alignment:
Q  4 cacttctcctcttttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    ||||||||| |  |||||||||||||| |||| |||||||||||||||||    
T  7191106 cacttctccacaattaaattgtgtgagctctagccactagcctacttgac 7191155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 11356840 - 11356877
Alignment:
Q  16 tttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  11356840 tttaaaatgtgtgagttctaaccactaggctacttgac 11356877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 43667956 - 43667915
Alignment:
Q  1 ttccacttctcctcttttaaattgtgtgagttctaaccacta 42  Q
    |||||||||||| |  ||||||||||||||||||||||||||    
T  43667956 ttccacttctccacaattaaattgtgtgagttctaaccacta 43667915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 6213508 - 6213544
Alignment:
Q  17 ttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  6213508 ttaaattgtgtgagttctagccactagactacttgac 6213544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 40375298 - 40375262
Alignment:
Q  17 ttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    |||||||||||||| |||||||||||| |||||||||    
T  40375298 ttaaattgtgtgagctctaaccactaggctacttgac 40375262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 27928 - 27877
Alignment:
Q  2 tccacttctcctcttttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    ||||||||||| |  ||||||||||||||||||| ||||||| |||||||||    
T  27928 tccacttctccacaattaaattgtgtgagttctagccactaggctacttgac 27877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 3766883 - 3766934
Alignment:
Q  2 tccacttctcctcttttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    ||||||||||| |  |||||||||||||| |||||||||||| |||||||||    
T  3766883 tccacttctccacaattaaattgtgtgagctctaaccactaggctacttgac 3766934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 44616674 - 44616725
Alignment:
Q  2 tccacttctcctcttttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    ||||||||||| |  |||||||||||||| |||||||||||| |||||||||    
T  44616674 tccacttctccacaattaaattgtgtgagctctaaccactagactacttgac 44616725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 34051872 - 34051822
Alignment:
Q  3 ccacttctcctcttttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    |||||||||| |  ||||||||||||||||||||||| ||| |||||||||    
T  34051872 ccacttctccacaattaaattgtgtgagttctaaccaatagactacttgac 34051822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 12615838 - 12615874
Alignment:
Q  17 ttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    |||||||||||||| |||||||||||| |||||||||    
T  12615838 ttaaattgtgtgagctctaaccactagactacttgac 12615874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 28424314 - 28424278
Alignment:
Q  17 ttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    |||||||||||||| |||||||||||| |||||||||    
T  28424314 ttaaattgtgtgagctctaaccactagactacttgac 28424278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 42548011 - 42547975
Alignment:
Q  17 ttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    ||||||||||||||||||||||| ||| |||||||||    
T  42548011 ttaaattgtgtgagttctaaccattaggctacttgac 42547975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 22574942 - 22574993
Alignment:
Q  2 tccacttctcctcttttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    ||||||||||| |  |||||||||||||| |||||||||||| |||||||||    
T  22574942 tccacttctccacaattaaattgtgtgagctctaaccactagactacttgac 22574993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 216279 - 216329
Alignment:
Q  3 ccacttctcctcttttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    |||||||||| |  |||||||||||||| |||||||||||| |||||||||    
T  216279 ccacttctccacaattaaattgtgtgagctctaaccactaggctacttgac 216329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 10934671 - 10934719
Alignment:
Q  2 tccacttctcctcttttaaattgtgtgagttctaaccactagcctactt 50  Q
    ||||||||||| |  ||||||||||||||||||| ||||||| ||||||    
T  10934671 tccacttctccacaattaaattgtgtgagttctagccactaggctactt 10934719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 24618482 - 24618446
Alignment:
Q  17 ttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  24618482 ttaaattgtgtgagttctagccactagactacttgac 24618446  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 28222949 - 28222985
Alignment:
Q  17 ttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    |||||||||||||| |||||||||||| |||||||||    
T  28222949 ttaaattgtgtgagctctaaccactaggctacttgac 28222985  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 626980 - 626929
Alignment:
Q  2 tccacttctcctcttttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    ||||||||||| |  |||||||||||||| |||||||||||| |||||||||    
T  626980 tccacttctccacaattaaattgtgtgagctctaaccactaggctacttgac 626929  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 3847753 - 3847804
Alignment:
Q  2 tccacttctcctcttttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    ||||||||||| |  ||||||||||||||||||| ||||||| |||||||||    
T  3847753 tccacttctccacaattaaattgtgtgagttctagccactaggctacttgac 3847804  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 18360565 - 18360616
Alignment:
Q  2 tccacttctcctcttttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    ||||||||||| |  ||||||||||||||||||||||||| | |||||||||    
T  18360565 tccacttctccacaattaaattgtgtgagttctaaccactggactacttgac 18360616  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 36132301 - 36132352
Alignment:
Q  2 tccacttctcctcttttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    ||||||||||| |  |||||||||||||| |||||||||||| |||||||||    
T  36132301 tccacttctccacaattaaattgtgtgaggtctaaccactaggctacttgac 36132352  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 36602364 - 36602313
Alignment:
Q  2 tccacttctcctcttttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    ||||||||||| |  ||||||||||||||||||||||||| | |||||||||    
T  36602364 tccacttctccacaattaaattgtgtgagttctaaccactggactacttgac 36602313  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 30057295 - 30057345
Alignment:
Q  3 ccacttctcctcttttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    |||||||||| |  |||||||||||||| |||||||||||| |||||||||    
T  30057295 ccacttctccacaattaaattgtgtgagctctaaccactaggctacttgac 30057345  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 56087951 - 56087901
Alignment:
Q  3 ccacttctcctcttttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    |||||||||| |  ||||||||||||||||||| ||||||| |||||||||    
T  56087951 ccacttctccacaattaaattgtgtgagttctagccactagactacttgac 56087901  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 9761189 - 9761238
Alignment:
Q  4 cacttctcctcttttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    ||||||||| |  |||||||||||||| |||||||||||| |||||||||    
T  9761189 cacttctccacaattaaattgtgtgagctctaaccactagactacttgac 9761238  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 1458016 - 1457968
Alignment:
Q  2 tccacttctcctcttttaaattgtgtgagttctaaccactagcctactt 50  Q
    ||||||||||| |  |||||||||||||| |||||||||||| ||||||    
T  1458016 tccacttctccacaattaaattgtgtgagctctaaccactaggctactt 1457968  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 8965181 - 8965217
Alignment:
Q  17 ttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    |||||||||||||| |||||||||||| |||||||||    
T  8965181 ttaaattgtgtgagctctaaccactaggctacttgac 8965217  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 17447172 - 17447136
Alignment:
Q  17 ttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  17447172 ttaaattgtgtgagttctagccactaggctacttgac 17447136  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 37310114 - 37310150
Alignment:
Q  17 ttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  37310114 ttaaattgtgtgaattctaaccactagactacttgac 37310150  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 37318133 - 37318093
Alignment:
Q  3 ccacttctcctcttttaaattgtgtgagttctaaccactag 43  Q
    |||||||||| |  |||||||||||||||||||||||||||    
T  37318133 ccacttctccacaattaaattgtgtgagttctaaccactag 37318093  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 47890767 - 47890815
Alignment:
Q  2 tccacttctcctcttttaaattgtgtgagttctaaccactagcctactt 50  Q
    ||||||||||| |  |||||||||||||| |||||||||||| ||||||    
T  47890767 tccacttctccacaattaaattgtgtgagctctaaccactaggctactt 47890815  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 10349472 - 10349523
Alignment:
Q  2 tccacttctcctcttttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    ||||||||||| |  |||||||||||||| |||||||||||| |||||||||    
T  10349472 tccacttctccacaattaaattgtgtgagctctaaccactaggctacttgac 10349523  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 4860234 - 4860284
Alignment:
Q  3 ccacttctcctcttttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    |||||||||| |  |||||||||||||| |||||||||||| |||||||||    
T  4860234 ccacttctccacaattaaattgtgtgagctctaaccactagactacttgac 4860284  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 4880242 - 4880292
Alignment:
Q  3 ccacttctcctcttttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    |||||||||| |  |||||||||||||| |||||||||||| |||||||||    
T  4880242 ccacttctccacaattaaattgtgtgagctctaaccactagactacttgac 4880292  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 32429820 - 32429870
Alignment:
Q  3 ccacttctcctcttttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    |||||||||| |  |||||||||||||| |||||||||||| |||||||||    
T  32429820 ccacttctccacaattaaattgtgtgagctctaaccactaggctacttgac 32429870  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 45512991 - 45512942
Alignment:
Q  4 cacttctcctcttttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    ||||||||| |  |||||||||||||| |||||||||||| |||||||||    
T  45512991 cacttctccacaattaaattgtgtgagctctaaccactagactacttgac 45512942  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 11436577 - 11436617
Alignment:
Q  3 ccacttctcctcttttaaattgtgtgagttctaaccactag 43  Q
    |||||||||| |  |||||||||||||||||||||||||||    
T  11436577 ccacttctccacaattaaattgtgtgagttctaaccactag 11436617  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 15975391 - 15975355
Alignment:
Q  17 ttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    |||||||||||||| |||||||||||| |||||||||    
T  15975391 ttaaattgtgtgagctctaaccactaggctacttgac 15975355  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 13773472 - 13773523
Alignment:
Q  2 tccacttctcctcttttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    ||||||||||| |  |||||||||||||| |||||||||||| |||||||||    
T  13773472 tccacttctccacaattaaattgtgtgagctctaaccactaggctacttgac 13773523  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 36182714 - 36182765
Alignment:
Q  2 tccacttctcctcttttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    ||||||||||| |  |||||||||||||| |||||||||||| |||||||||    
T  36182714 tccacttctccacaattaaattgtgtgagctctaaccactaggctacttgac 36182765  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 5112848 - 5112798
Alignment:
Q  3 ccacttctcctcttttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    |||||||||| |  |||||||||||||| |||||||||||| |||||||||    
T  5112848 ccacttctccacaattaaattgtgtgagctctaaccactaggctacttgac 5112798  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 2289700 - 2289733
Alignment:
Q  20 aattgtgtgagttctaaccactagcctacttgac 53  Q
    |||||||||||||||||||||||| |||||||||    
T  2289700 aattgtgtgagttctaaccactaggctacttgac 2289733  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 7907523 - 7907491
Alignment:
Q  20 aattgtgtgagttctaaccactagcctacttga 52  Q
    |||||||||||||||||||||||| ||||||||    
T  7907523 aattgtgtgagttctaaccactaggctacttga 7907491  T

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Target: scaffold0199 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 8897 - 8861
Alignment:
Q  17 ttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  8897 ttaaattgtgtgagttctagccactaggctacttgac 8861  T

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Target: scaffold0038 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 23447 - 23483
Alignment:
Q  17 ttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    |||||||||||||| |||||||||||| |||||||||    
T  23447 ttaaattgtgtgagctctaaccactaggctacttgac 23483  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 18756073 - 18756109
Alignment:
Q  17 ttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  18756073 ttaaattgtgtgagttctagccactagactacttgac 18756109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 22931600 - 22931564
Alignment:
Q  17 ttaaattgtgtgagttctaaccactagcctacttgac 53  Q
    |||||||||||||| |||||||||||| |||||||||    
T  22931600 ttaaattgtgtgagctctaaccactagactacttgac 22931564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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