View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19380_low_7 (Length: 674)
Name: NF19380_low_7
Description: NF19380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19380_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 607; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 1 - 644
Target Start/End: Original strand, 39975450 - 39976093
Alignment:
| Q |
1 |
tcataagcatatacatatataggatcatcatcaatagcattttttcaaattactaacttgtggaacaatcccttcattccctgcaagcatcatatactta |
100 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
39975450 |
tcataagcatatacatatataggatgatcatcaatagcattttttcaaattactaacttgttgaacaatcccttcattccctgcaagcatcatatactta |
39975549 |
T |
|
| Q |
101 |
tccctcctagtaaaatttgtacactcaaacctcaaagcatcacccaattgtttctgtatataattagccacttcaacacttgactttcctccagcacatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39975550 |
tccctcctagtaaaatttgtacactcaaacctcaaagcatcacccaattgtttctgtatataattagccacttcaacacttgactttcctccagcacatg |
39975649 |
T |
|
| Q |
201 |
taagttctttaggtaccttcccaagaatttgaatatgataacttggcttaggactcatcaagnnnnnnntaggatccaaacacttcaatccgcttgctgt |
300 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
39975650 |
taagttctttaggtaccttcccaagaatttgaatatgataacttggcttaggattcatcaagaaaaaaataggatccaaacacttcaatccgcttgctgt |
39975749 |
T |
|
| Q |
301 |
ggtcccataaaacatgctgacatgagtattcattgccacaggcactatctcattagccaactcagcaaacaatgaactaaaccttaacaaatatggttct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39975750 |
ggtcccataaaacatgctgacatgagtattcattgccacaggcactatctcattagccaactcagcaaacaatgaactaaaccttaacaaatatggttct |
39975849 |
T |
|
| Q |
401 |
ctacatgttgttccttcaggacaaacaactaaatctccttctcttagtaacttttgcattgtttcaccatcttgttttctgtctcttgttaatctcactg |
500 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39975850 |
ctacatgttgttccttcaggacaaacaactaaatcaccttctcttagtaacttttgcattgtttcaccatcttgttttctgtctcttgttaatctcactg |
39975949 |
T |
|
| Q |
501 |
tttttattggtgctatgaactcagaaactttgcttaaactatatgttactgcagttaatggctttgctaatgatgtgcttaagaaaacaggatccaacaa |
600 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39975950 |
tttttattggtgctatgaactcagaaactttgcttaaactatatgttactgcagttaatggctttgctaatgatgtgcttaagaaaacaggatccaacaa |
39976049 |
T |
|
| Q |
601 |
tgtcctatgtgtgcatacaaacaaaacacctttgtttggttttg |
644 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39976050 |
tgtcctatgtgtgcatacaaacaaaacacctttgtttggttttg |
39976093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 423
Target Start/End: Original strand, 25552899 - 25552961
Alignment:
| Q |
361 |
ctcagcaaacaatgaactaaaccttaacaaatatggttctctacatgttgttccttcaggaca |
423 |
Q |
| |
|
|||||||||||| | ||||||||||| ||| || ||||||||||| ||||||||||| ||||| |
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| T |
25552899 |
ctcagcaaacaaaggactaaaccttagcaagtaaggttctctacaagttgttccttctggaca |
25552961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 440
Target Start/End: Original strand, 34391278 - 34391315
Alignment:
| Q |
403 |
acatgttgttccttcaggacaaacaactaaatctcctt |
440 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||| |
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|
| T |
34391278 |
acatgttgttccttctggacagacaactaaatctcctt |
34391315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 118; Significance: 7e-60; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 71 - 497
Target Start/End: Original strand, 16147298 - 16147724
Alignment:
| Q |
71 |
ccttcattccctgcaagcatcatatacttatccctcctagtaaaatttgtacactcaaacctcaaagcatcacccaattgtttctgtatataattagcca |
170 |
Q |
| |
|
||||||||||| || | ||||||||| ||||||||||| |||| ||||||||||||||||| |||||||||||||| | | | |||||||||||||||| |
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| T |
16147298 |
ccttcattcccagctaacatcatatatttatccctccttgtaatatttgtacactcaaaccctaaagcatcacccaactctctttgtatataattagcca |
16147397 |
T |
|
| Q |
171 |
cttcaacacttgactttcctccagcacatgtaagttctttaggtaccttcccaagaatttgaatatgataacttggcttaggactcatcaagnnnnnnnt |
270 |
Q |
| |
|
|||||| | || ||||| |||||||| || |||||||| |||||||| |||| | || ||||| |||||| ||| ||| ||||||| |
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|
| T |
16147398 |
cttcaaaaggagattttccaccagcacaagtgagttcttttggtaccttttcaagtacttcaatattataactaggccatggattcatcaaaaatagaaa |
16147497 |
T |
|
| Q |
271 |
aggatccaaacacttcaatccgcttgctgtggtcccataaaacatgctgacatgagtattcattgccacaggcactatctcattagccaactcagcaaac |
370 |
Q |
| |
|
|| |||||||| || ||||| || ||||| || ||||||||||| || |||| | |||||| ||||| || || ||||||| ||| | |||||||| |
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| T |
16147498 |
agagtccaaacattttaatccactagctgttgtaccataaaacatactcacattaacattcatagccactggaacaatctcatcagcaagttcagcaaaa |
16147597 |
T |
|
| Q |
371 |
aatgaactaaaccttaacaaatatggttctctacatgttgttccttcaggacaaacaactaaatctccttctcttagtaacttttgcattgtttcaccat |
470 |
Q |
| |
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| ||||||||||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||| ||||| |||| ||| ||||||||||||| | || |
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| T |
16147598 |
agtgaactaaaccttaataaataaggttccctacaagttgttccttcaggacaaacaactaaatcaccttcacttaacaacctttgcattgtttccctat |
16147697 |
T |
|
| Q |
471 |
cttgttttctgtctcttgttaatctca |
497 |
Q |
| |
|
|||||| ||| || |||||||| |||| |
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| T |
16147698 |
cttgttctctatcccttgttaaactca |
16147724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 74 - 489
Target Start/End: Complemental strand, 16195634 - 16195219
Alignment:
| Q |
74 |
tcattccctgcaagcatcatatacttatccctcctagtaaaatttgtacactcaaacctcaaagcatcacccaattgtttctgtatataattagccactt |
173 |
Q |
| |
|
|||||||| || | ||||||||| ||||||||||| |||| ||| || |||||||| | ||||||||||| ||||| |||||||||||||| |||||||| |
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| T |
16195634 |
tcattcccagctaacatcatatatttatccctccttgtaatattggtgcactcaaatcccaaagcatcactcaattctttctgtatataatcagccactt |
16195535 |
T |
|
| Q |
174 |
caacacttgactttcctccagcacatgtaagttctttaggtaccttcccaagaatttgaatatgataacttggcttaggactcatcaagnnnnnnntagg |
273 |
Q |
| |
|
||| | |||||||| |||||||| || |||||||| || || || |||| |||| ||| | |||||||||| ||| ||||||| ||| |
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| T |
16195534 |
caaaaggagactttccaccagcacaagtgagttcttttggaactttatcaagcatttcaatgttataacttggccatggattcatcaaaaatagaaaagg |
16195435 |
T |
|
| Q |
274 |
atccaaacacttcaatccgcttgctgtggtcccataaaacatgctgacatgagtattcattgccacaggcactatctcattagccaactcagcaaacaat |
373 |
Q |
| |
|
|||||||| || ||||| || ||||| || ||||||||||| || |||| | |||||| ||||| || || ||||||| ||| | |||||||| | | |
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|
| T |
16195434 |
gtccaaacattttaatccactagctgttgtaccataaaacatactcacattatcattcatagccactggaacaatctcatcagcaatttcagcaaaaagt |
16195335 |
T |
|
| Q |
374 |
gaactaaaccttaacaaatatggttctctacatgttgttccttcaggacaaacaactaaatctccttctcttagtaacttttgcattgtttcaccatctt |
473 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||||| |||||||||||||| || ||||||||||| ||||| || || ||| ||||||||||||| | ||||| |
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| T |
16195334 |
gaactaaaccttaataaataaggttccctacaagttgttccttcagggcacacaactaaatcaccttccctaagcaacctttgcattgtttccctatctt |
16195235 |
T |
|
| Q |
474 |
gttttctgtctcttgt |
489 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
16195234 |
gttctctgtctcttgt |
16195219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 573 - 641
Target Start/End: Complemental strand, 28538651 - 28538583
Alignment:
| Q |
573 |
atgtgcttaagaaaacaggatccaacaatgtcctatgtgtgcatacaaacaaaacacctttgtttggtt |
641 |
Q |
| |
|
||||||||| |||||| |||||||| | ||||||||||||||||||||| | ||| |||||||| |||| |
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|
| T |
28538651 |
atgtgcttaggaaaactggatccaaaagtgtcctatgtgtgcatacaaagataactcctttgttaggtt |
28538583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 452 - 502
Target Start/End: Complemental strand, 50133706 - 50133656
Alignment:
| Q |
452 |
ttttgcattgtttcaccatcttgttttctgtctcttgttaatctcactgtt |
502 |
Q |
| |
|
|||||||||||||||||||||| ||||||| | ||| |||||||||||||| |
|
|
| T |
50133706 |
ttttgcattgtttcaccatcttattttctgccccttattaatctcactgtt |
50133656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 362 - 440
Target Start/End: Original strand, 38792285 - 38792363
Alignment:
| Q |
362 |
tcagcaaacaatgaactaaaccttaacaaatatggttctctacatgttgttccttcaggacaaacaactaaatctcctt |
440 |
Q |
| |
|
|||| |||||| || ||||||||||| ||||| ||||||||||| || || ||||| ||||| ||||||| ||| |||| |
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|
| T |
38792285 |
tcagaaaacaaagagctaaaccttaataaataaggttctctacaagtggtcccttctggacacacaactacatcccctt |
38792363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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