View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19380_low_70 (Length: 237)
Name: NF19380_low_70
Description: NF19380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19380_low_70 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 17700259 - 17700039
Alignment:
| Q |
1 |
ttttccttagttataatatcatcatcgattattgaacagtttgctgacacgatatatataaaatttagattatcaatttccaccttttgtgtttgtctta |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
17700259 |
ttttccttagttataatatcatcgtcgattattgaacagtttgctgacacgatatatataaattttagattatcaatttccaccttttgtggttgtctta |
17700160 |
T |
|
| Q |
101 |
atcttctaattttgtttgtgtgattctaaagaggttatgtgcactaagctagtatgaaaatataatggaattgagggttgaaattgatggagatgttgct |
200 |
Q |
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||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
17700159 |
atcttctaattttgtttgtgtgaatctaaataggttatgtgcactaagctagtatgaaaatataatggaattgagggttgaaattaatggagatgttgct |
17700060 |
T |
|
| Q |
201 |
tatttggaaaaatgtctagat |
221 |
Q |
| |
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||||||||||||| ||||||| |
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| T |
17700059 |
tatttggaaaaatttctagat |
17700039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 17663720 - 17663941
Alignment:
| Q |
1 |
ttttccttagttataatatcatcatcgattattgaacagtttgctgacacg-atatatataaaatttagattatcaatttccaccttttgtgtttgtctt |
99 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
17663720 |
ttttccttagttataatatcatcatcgattattgaacagtttgctgagacatatatatataaattttagattttcaatttccaccttttgtgtttgtctt |
17663819 |
T |
|
| Q |
100 |
aatcttctaattttgtttgtgtgattctaaagaggttatgtgcactaagctagtatgaaaatataatggaattgagggttgaaattgatggagatgttgc |
199 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17663820 |
aatcttctaattttgtttgtgtgattctaaataggttatgtgcagtaagctagtgtaaaaatataatggaattgagggttgaaattgatggagatgttgc |
17663919 |
T |
|
| Q |
200 |
ttatttggaaaaatgtctagat |
221 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
17663920 |
ttatttggaaaaatgtctagat |
17663941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 38226888 - 38226684
Alignment:
| Q |
17 |
tatcatcatcgattattgaacagtttgctgacacgatatatataaaatttagattatcaatttccaccttttgtgtttgtcttaatcttctaattttgtt |
116 |
Q |
| |
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||||||||| |||||||| || |||||| ||| |||||||||||| ||||| |||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
38226888 |
tatcatcatgaattattgagcaatttgcttacaagatatatataaagtttagtttatcaatttacaccttttacatttgtcttaatcttctaattttgtt |
38226789 |
T |
|
| Q |
117 |
tgtgtgattctaaagaggttatgtgcactaagctagtatgaaaatataatggaattgagggttgaaattgatggagatgttgcttatttggaaaaatgtc |
216 |
Q |
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|| || | |||| ||||||| |||||||| ||||||||||||| ||||| ||||||||||||||||| ||||||| ||||| ||| ||| |||||| |
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| T |
38226788 |
tgagttaaactaactaggttatttgcactaaataagtatgaaaatatgatggagttgagggttgaaattgaaggagatgctgcttgttttgaagaatgtc |
38226689 |
T |
|
| Q |
217 |
tagat |
221 |
Q |
| |
|
||||| |
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|
| T |
38226688 |
tagat |
38226684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 10 - 123
Target Start/End: Complemental strand, 21899027 - 21898915
Alignment:
| Q |
10 |
gttataatatcatcatcgattattgaacagtttgctgacacgatatatataaaatttagattatcaatttccaccttttgtgtttgtcttaatcttctaa |
109 |
Q |
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|
||||||||||||| || ||||||||||||||||||||||||||| |||||||| ||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
21899027 |
gttataatatcattatggattattgaacagtttgctgacacgatttatataaattttgg-ttatcaatttccaccttttgtgtttgtcttaatcttctaa |
21898929 |
T |
|
| Q |
110 |
ttttgtttgtgtga |
123 |
Q |
| |
|
|||||||||||||| |
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|
| T |
21898928 |
ttttgtttgtgtga |
21898915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 221
Target Start/End: Complemental strand, 22663561 - 22663349
Alignment:
| Q |
9 |
agttataatatcatcatcgattattgaacagtttgctgacacgatatatataaaatttagattatcaatttccaccttttgtgtttgtcttaatcttcta |
108 |
Q |
| |
|
||||||||||| || || ||||||| | ||||||| | ||| ||||||| || ||||| ||||| ||||||||||||||||||||| ||||||||||| |
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| T |
22663561 |
agttataatattattatggattatttagcagtttgtttacagaatatataaaatttttaggttatccatttccaccttttgtgtttgtgttaatcttcta |
22663462 |
T |
|
| Q |
109 |
attttgtttgtgtgattctaaagaggttatgtgcactaagctagtatgaaaatataatggaattgagggttgaaattgatggagatgttgcttatttgga |
208 |
Q |
| |
|
||||||||||||||| || || ||| || |||||||| ||| ||||||||| ||| | | ||||||| |||||||||||||| | ||||||||| |
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|
| T |
22663461 |
attttgtttgtgtgaatcataattggtaatttgcactaaattagcatgaaaataggatgaagtagagggtttgaattgatggagatgctatttatttgga |
22663362 |
T |
|
| Q |
209 |
aaaatgtctagat |
221 |
Q |
| |
|
| ||||| ||||| |
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| T |
22663361 |
agaatgtttagat |
22663349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 27777752 - 27777867
Alignment:
| Q |
8 |
tagttataatatcatcatcgattattgaacagtttgctgacacgatatatataaaatttagattatcaatttccaccttttgtgtttgtcttaatcttct |
107 |
Q |
| |
|
|||||| ||||||||||| |||||||| || |||||| ||| |||||||||||| ||||| ||||||||||||| ||||| |||||||||||||||| |
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| T |
27777752 |
tagttaaaatatcatcatgaattattgagcaatttgcttacaagatatatataaagtttagtttatcaatttccatcttttacatttgtcttaatcttct |
27777851 |
T |
|
| Q |
108 |
aattttgtttgtgtga |
123 |
Q |
| |
|
||||||||| |||| |
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| T |
27777852 |
tgttttgtttgagtga |
27777867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 27782199 - 27782092
Alignment:
| Q |
16 |
atatcatcatcgattattgaacagtttgctgacacgatatatataaaatttagattatcaatttccaccttttgtgtttgtcttaatcttctaattttgt |
115 |
Q |
| |
|
|||||||||| |||||||| || || ||| ||| |||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
27782199 |
atatcatcatgaattattgagcaattcgcttacaagatatatataaagtttagtttatcaatttccaccttttacatttgtcttaatcttctagttttgt |
27782100 |
T |
|
| Q |
116 |
ttgtgtga |
123 |
Q |
| |
|
||| |||| |
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|
| T |
27782099 |
ttgagtga |
27782092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 35250047 - 35249931
Alignment:
| Q |
7 |
ttagttataatatcatcatcgattattgaacagtttgctgacacgatatatataaaatttagattatcaatttccaccttttgtgtttgtcttaatcttc |
106 |
Q |
| |
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||||||| ||||||||||| |||||||| || |||||| ||| ||||||||| | ||||||||||||||| ||||||| ||||||||| ||||| |
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| T |
35250047 |
ttagttaaaatatcatcatgaattattgagcaatttgcttacaacatatatatagagtttagattatcaattattaccttttacatttgtcttagtcttc |
35249948 |
T |
|
| Q |
107 |
taattttgtttgtgtga |
123 |
Q |
| |
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|||||||||||| |||| |
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| T |
35249947 |
taattttgtttgagtga |
35249931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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