View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19380_low_71 (Length: 237)

Name: NF19380_low_71
Description: NF19380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19380_low_71
NF19380_low_71
[»] chr2 (3 HSPs)
chr2 (16-217)||(40059021-40059222)
chr2 (16-217)||(40084959-40085160)
chr2 (16-217)||(40077035-40077250)
[»] chr3 (2 HSPs)
chr3 (27-165)||(53322412-53322548)
chr3 (57-132)||(44352747-44352822)
[»] chr4 (2 HSPs)
chr4 (27-130)||(22016195-22016298)
chr4 (39-158)||(20005703-20005812)
[»] chr8 (1 HSPs)
chr8 (44-144)||(5450715-5450814)
[»] chr7 (2 HSPs)
chr7 (73-134)||(35052914-35052975)
chr7 (94-167)||(35052966-35053039)
[»] chr5 (2 HSPs)
chr5 (103-158)||(12735846-12735901)
chr5 (103-158)||(12798673-12798728)
[»] chr1 (1 HSPs)
chr1 (39-158)||(14124553-14124662)


Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 40059222 - 40059021
Alignment:
Q  16 atgaagcaaagagaacctggcctttaacaggttcatgtaagttccagaaaacataggtttcaatgacatcaagtcctccatctttagatttctgaataag 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  40059222 atgaagcaaagagaacctggcctttaacaggttcatgtaagttccagaaaacataggtttcaataacatcaagtcctccatctttagatttctgaataag 40059123  T
Q  116 gtctggccacatctataaacaacaacaaattcagcactgtttaaattcaacacacaaacagaatcaaagagagacataaaataaaacctgtggagtacta 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40059122 gtctggccacatctataaacaacaacaaattcagcactgtttaaattcaacacacaaacagaatcaaagagagacataaaataaaacctgtggagtacta 40059023  T
Q  216 cg 217  Q
    ||    
T  40059022 cg 40059021  T

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Target: chr2; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 40085160 - 40084959
Alignment:
Q  16 atgaagcaaagagaacctggcctttaacaggttcatgtaagttccagaaaacataggtttcaatgacatcaagtcctccatctttagatttctgaataag 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  40085160 atgaagcaaagagaacctggcctttaacaggttcatgtaagttccagaaaacataggtttcaataacatcaagtcctccatctttagatttctgaataag 40085061  T
Q  116 gtctggccacatctataaacaacaacaaattcagcactgtttaaattcaacacacaaacagaatcaaagagagacataaaataaaacctgtggagtacta 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40085060 gtctggccacatctataaacaacaacaaattcagcactgtttaaattcaacacacaaacagaatcaaagagagacataaaataaaacctgtggagtacta 40084961  T
Q  216 cg 217  Q
    ||    
T  40084960 cg 40084959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 40077250 - 40077035
Alignment:
Q  16 atgaagcaaagagaacctggcctttaacaggttcatgtaagttccagaaaacataggtttcaatgacatcaagtcctccatctttagatttctgaataag 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40077250 atgaagcaaagagaacctggcctttaacaggttcatgtaagttccagaaaacataggtttcaatgacatcaagtcctccatctttagatttctgaataag 40077151  T
Q  116 gtctggccacatctataaacaacaacaaattcagcactgtttaaattc--------------aacacacaaacagaatcaaagagagacataaaataaaa 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||              ||| ||||||||||||||||||||||||||||||||||    
T  40077150 gtctggccacatctataaacaacaacaaattcagcactgtttaaaatcaaatacaatgcaaaaactcacaaacagaatcaaagagagacataaaataaaa 40077051  T
Q  202 cctgtggagtactacg 217  Q
    ||||||||||||||||    
T  40077050 cctgtggagtactacg 40077035  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 165
Target Start/End: Complemental strand, 53322548 - 53322412
Alignment:
Q  27 agaacctggcctttaacaggttcatgtaagttccagaaaacataggtttcaatgacatcaagtcctccatctttagatttctgaataaggtctggccaca 126  Q
    |||||||  |||||||| |||| |||||||||||||||| ||||| |||  ||||||| || |||||||||| || |||| ||||| |||| ||||||||    
T  53322548 agaacctaacctttaactggtttatgtaagttccagaaa-catag-tttggatgacataaaatcctccatctatatatttttgaatgaggtttggccaca 53322451  T
Q  127 tctataaacaacaacaaattcagcactgtttaaattcaa 165  Q
    ||||||| |||||||||||||| ||| ||||||| ||||    
T  53322450 tctataaccaacaacaaattcaacaccgtttaaaatcaa 53322412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 132
Target Start/End: Original strand, 44352747 - 44352822
Alignment:
Q  57 ttccagaaaacataggtttcaatgacatcaagtcctccatctttagatttctgaataaggtctggccacatctata 132  Q
    ||||||||||||||||||||||||||||| | ||| || ||||| | | | ||||||||  | |||||||||||||    
T  44352747 ttccagaaaacataggtttcaatgacatctattccaccttcttttgctgtttgaataagagcaggccacatctata 44352822  T

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Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 27 - 130
Target Start/End: Original strand, 22016195 - 22016298
Alignment:
Q  27 agaacctggcctttaacaggttcatgtaagttccagaaaacataggtttcaatgacatcaagtcctccatctttagatttctgaataaggtctggccaca 126  Q
    ||||||||||||  ||| || || || | ||||||||||||||| || ||||| ||||||| ||| |||||||| ||||||||||||||||| |||||||    
T  22016195 agaacctggcctcgaaccggctcgtgcaggttccagaaaacataagtctcaatcacatcaattcccccatcttttgatttctgaataaggtcaggccaca 22016294  T
Q  127 tcta 130  Q
    ||||    
T  22016295 tcta 22016298  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 158
Target Start/End: Complemental strand, 20005812 - 20005703
Alignment:
Q  39 ttaacaggttcatgtaagttccagaaaacataggtttcaatgacatcaagtcctccatctttagatttctgaataaggtctggccacatctataaacaac 138  Q
    ||||| ||||||||||||||| ||||| ||||| |||| ||||||| ||||||||||       |||| |||||||||| |||||||||||| || ||||    
T  20005812 ttaactggttcatgtaagttc-agaaa-catag-tttcgatgacataaagtcctcca-------atttttgaataaggtttggccacatctaaaaccaac 20005723  T
Q  139 aacaaattcagcactgttta 158  Q
    |||||||||| ||| |||||    
T  20005722 aacaaattcaacaccgttta 20005703  T

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Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 44 - 144
Target Start/End: Complemental strand, 5450814 - 5450715
Alignment:
Q  44 aggttcatgtaagttccagaaaacataggtttcaatgacatcaagtcctccatctttagatttctgaataaggtctggccacatctataaacaacaacaa 143  Q
    ||||||||||   ||||||||||||||||||| ||| ||||| | |||||| |||||||  ||||| ||||| |||||||||||||| ||||||||||||    
T  5450814 aggttcatgtccattccagaaaacataggtttgaatcacatccaatcctccttctttagccttctggataagatctggccacatcta-aaacaacaacaa 5450716  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 134
Target Start/End: Original strand, 35052914 - 35052975
Alignment:
Q  73 tttcaatgacatcaagtcctccatctttagatttctgaataaggtctggccacatctataaa 134  Q
    |||| ||||||| ||||||||||||| || |||| |||||||||| ||||||||||||||||    
T  35052914 tttcgatgacataaagtcctccatctataaatttttgaataaggtttggccacatctataaa 35052975  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 35052966 - 35053039
Alignment:
Q  94 catctttagatttctgaataaggtctggccacatctataaacaacaacaaattcagcactgtttaaattcaaca 167  Q
    ||||| || |||| |||||||||| ||||||||||||||| |||| ||||||||| |||  |||||| ||||||    
T  35052966 catctataaatttttgaataaggtttggccacatctataaccaacgacaaattcaacaccttttaaaatcaaca 35053039  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 158
Target Start/End: Original strand, 12735846 - 12735901
Alignment:
Q  103 atttctgaataaggtctggccacatctataaacaacaacaaattcagcactgttta 158  Q
    |||| |||||||||| |||||||||||| || |||||||||||||| |||||||||    
T  12735846 atttttgaataaggtttggccacatctaaaaccaacaacaaattcaacactgttta 12735901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 158
Target Start/End: Original strand, 12798673 - 12798728
Alignment:
Q  103 atttctgaataaggtctggccacatctataaacaacaacaaattcagcactgttta 158  Q
    |||| |||||||||| |||||||||||| || |||||||||||||| |||||||||    
T  12798673 atttttgaataaggtttggccacatctaaaaccaacaacaaattcaacactgttta 12798728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 158
Target Start/End: Original strand, 14124553 - 14124662
Alignment:
Q  39 ttaacaggttcatgtaagttccagaaaacataggtttcaatgacatcaagtcctccatctttagatttctgaataaggtctggccacatctataaacaac 138  Q
    ||||| ||||||||||||||| ||||| ||||| |||| ||||||| ||||||||||       |||| |||||||||| |||||||||||| || ||||    
T  14124553 ttaactggttcatgtaagttc-agaaa-catag-tttcgatgacataaagtcctcca-------atttttgaataaggtttggccacatctaaaaccaac 14124642  T
Q  139 aacaaattcagcactgttta 158  Q
    |||||||||| ||| |||||    
T  14124643 aacaaattcaacaccgttta 14124662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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