View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19380_low_8 (Length: 671)

Name: NF19380_low_8
Description: NF19380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19380_low_8
NF19380_low_8
[»] chr4 (22 HSPs)
chr4 (275-468)||(28683829-28684022)
chr4 (374-468)||(47198954-47199048)
chr4 (117-182)||(28684115-28684180)
chr4 (116-182)||(47199278-47199344)
chr4 (57-104)||(47199394-47199441)
chr4 (60-104)||(47198610-47198654)
chr4 (60-95)||(3848586-3848621)
chr4 (60-103)||(10424128-10424171)
chr4 (60-95)||(25371553-25371588)
chr4 (116-155)||(55159279-55159318)
chr4 (57-95)||(3847888-3847926)
chr4 (62-95)||(37275095-37275128)
chr4 (60-104)||(42544493-42544537)
chr4 (60-95)||(11417692-11417727)
chr4 (60-95)||(11417945-11417980)
chr4 (60-103)||(28684232-28684275)
chr4 (60-95)||(29651340-29651375)
chr4 (60-95)||(36865725-36865760)
chr4 (60-95)||(38694962-38694997)
chr4 (61-104)||(55159186-55159229)
chr4 (57-91)||(28683510-28683544)
chr4 (623-653)||(28683656-28683686)
[»] chr8 (25 HSPs)
chr8 (374-468)||(1366178-1366272)
chr8 (374-468)||(61802-61896)
chr8 (116-182)||(1366496-1366562)
chr8 (116-181)||(62124-62189)
chr8 (57-104)||(39254789-39254836)
chr8 (116-161)||(44752474-44752519)
chr8 (57-104)||(61456-61503)
chr8 (57-104)||(1365831-1365878)
chr8 (118-161)||(39254890-39254933)
chr8 (60-104)||(62239-62283)
chr8 (57-97)||(44752576-44752616)
chr8 (67-104)||(1366612-1366649)
chr8 (116-161)||(12351162-12351207)
chr8 (116-155)||(216492-216531)
chr8 (116-155)||(693052-693091)
chr8 (116-155)||(697261-697300)
chr8 (116-155)||(730115-730154)
chr8 (116-155)||(854010-854049)
chr8 (60-103)||(5035276-5035319)
chr8 (57-104)||(39255751-39255798)
chr8 (60-95)||(41859315-41859350)
chr8 (57-104)||(44751610-44751657)
chr8 (623-653)||(61603-61633)
chr8 (62-95)||(37639718-37639751)
chr8 (60-92)||(44098432-44098464)
[»] chr5 (11 HSPs)
chr5 (116-182)||(13655032-13655098)
chr5 (60-104)||(13654938-13654982)
chr5 (60-103)||(33001937-33001980)
chr5 (59-91)||(39167452-39167484)
chr5 (11-55)||(41137972-41138016)
chr5 (60-95)||(8204125-8204160)
chr5 (60-95)||(15184025-15184060)
chr5 (60-95)||(33002824-33002859)
chr5 (60-95)||(39950409-39950444)
chr5 (623-653)||(13655529-13655559)
chr5 (57-91)||(13655672-13655706)
[»] chr7 (10 HSPs)
chr7 (344-468)||(33302360-33302476)
chr7 (60-95)||(668184-668219)
chr7 (60-95)||(7677422-7677457)
chr7 (60-95)||(7677817-7677852)
chr7 (60-95)||(17145627-17145662)
chr7 (60-95)||(37468915-37468950)
chr7 (60-95)||(37469013-37469048)
chr7 (60-95)||(38778859-38778894)
chr7 (60-95)||(38779571-38779606)
chr7 (60-95)||(41194518-41194553)
[»] chr6 (10 HSPs)
chr6 (116-155)||(9574481-9574520)
chr6 (57-104)||(9574570-9574617)
chr6 (57-95)||(7531831-7531869)
chr6 (60-95)||(7193343-7193378)
chr6 (60-95)||(15083326-15083361)
chr6 (60-95)||(22582487-22582522)
chr6 (60-95)||(22587318-22587353)
chr6 (60-95)||(33480636-33480671)
chr6 (57-87)||(7532456-7532486)
chr6 (62-95)||(33018424-33018457)
[»] chr3 (8 HSPs)
chr3 (57-104)||(17227947-17227994)
chr3 (60-103)||(32490195-32490238)
chr3 (57-95)||(17226970-17227008)
chr3 (60-103)||(36750050-36750093)
chr3 (60-95)||(36750445-36750480)
chr3 (60-103)||(38923665-38923708)
chr3 (60-103)||(42145278-42145321)
chr3 (60-103)||(44687163-44687206)
[»] chr1 (13 HSPs)
chr1 (116-155)||(37874871-37874910)
chr1 (57-95)||(51987829-51987867)
chr1 (57-104)||(35616774-35616821)
chr1 (60-103)||(48972445-48972488)
chr1 (57-95)||(51988472-51988510)
chr1 (60-95)||(193855-193890)
chr1 (60-91)||(8560844-8560875)
chr1 (60-95)||(16270212-16270247)
chr1 (60-95)||(23440873-23440908)
chr1 (60-95)||(51974442-51974477)
chr1 (57-95)||(35615769-35615807)
chr1 (60-104)||(37874069-37874113)
chr1 (60-92)||(48971710-48971742)
[»] chr2 (8 HSPs)
chr2 (57-104)||(5276467-5276514)
chr2 (116-155)||(5277305-5277344)
chr2 (60-103)||(13134323-13134366)
chr2 (60-96)||(14574006-14574042)
chr2 (60-95)||(21471022-21471057)
chr2 (60-95)||(21471962-21471997)
chr2 (57-95)||(41042544-41042582)
chr2 (57-87)||(45139694-45139724)
[»] scaffold0311 (1 HSPs)
scaffold0311 (60-95)||(168-203)


Alignment Details
Target: chr4 (Bit Score: 182; Significance: 5e-98; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 275 - 468
Target Start/End: Complemental strand, 28684022 - 28683829
Alignment:
Q  275 tggaatagtgaaccatcagatccgattactggttctttttgagtttttagtgttctctagttgtatgtcagaatagtgaaattaacaagttttatttaca 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28684022 tggaatagtgaaccatcagatccgattactggttctttttgagtttttagtgttctctagttgtatgtcagaatagtgaaattaacaagttttatttaca 28683923  T
Q  375 atccttatgtagatatcagtgtgtcaagtaagatagtatagatggaagaattcaatattccaatcaagattgatgataaatcagcaggtgatgt 468  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  28683922 attcttatgtagatatcagtgtgtcaagtaagatagtatagatggaagaatccaatatttcaatcaagattgatgataaatcagcaggtgatgt 28683829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 374 - 468
Target Start/End: Complemental strand, 47199048 - 47198954
Alignment:
Q  374 aatccttatgtagatatcagtgtgtcaagtaagatagtatagatggaagaattcaatattccaatcaagattgatgataaatcagcaggtgatgt 468  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  47199048 aatctttatgtagatatcagtgtgtcaggtaagatagtatagatggaagaatccaatattccaatcaagattgatgataaatcagcaggtgatgt 47198954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 117 - 182
Target Start/End: Complemental strand, 28684180 - 28684115
Alignment:
Q  117 ccacactatattttcttcacatcatctctaaccttaacatcaacatggaaatccagaaggacatgg 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  28684180 ccacactatattttcttcacatcatctctaaccttaacatcaacatggaaatcaagaaggacatgg 28684115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 116 - 182
Target Start/End: Complemental strand, 47199344 - 47199278
Alignment:
Q  116 tccacactatattttcttcacatcatctctaaccttaacatcaacatggaaatccagaaggacatgg 182  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  47199344 tccacacaatattttctttacatcatctctaaccttaacatcaacatggaaattcagaaggacatgg 47199278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 47199441 - 47199394
Alignment:
Q  57 tggcatttaatttgggaaaggagacttctttcccaccatagaaaagtc 104  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  47199441 tggcatttaatttgggaaaagagacttctttcccaccataggaaagtc 47199394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 47198610 - 47198654
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccaccatagaaaagtc 104  Q
    |||||||||||||||||||||||||||||||||||| | ||||||    
T  47198610 catttaatttgggaaaggagacttctttcccaccatgggaaagtc 47198654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 60 - 95
Target Start/End: Complemental strand, 3848621 - 3848586
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccaccat 95  Q
    ||||||||||||||||||||||||||||||||||||    
T  3848621 catttaatttgggaaaggagacttctttcccaccat 3848586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 60 - 103
Target Start/End: Original strand, 10424128 - 10424171
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccaccatagaaaagt 103  Q
    ||||||||||||||||||||| |||||||||||||||| |||||    
T  10424128 catttaatttgggaaaggagagttctttcccaccataggaaagt 10424171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 60 - 95
Target Start/End: Complemental strand, 25371588 - 25371553
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccaccat 95  Q
    ||||||||||||||||||||||||||||||||||||    
T  25371588 catttaatttgggaaaggagacttctttcccaccat 25371553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 116 - 155
Target Start/End: Original strand, 55159279 - 55159318
Alignment:
Q  116 tccacactatattttcttcacatcatctctaaccttaaca 155  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  55159279 tccacactataatttcttcacatcatctctaaccttaaca 55159318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 95
Target Start/End: Original strand, 3847888 - 3847926
Alignment:
Q  57 tggcatttaatttgggaaaggagacttctttcccaccat 95  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  3847888 tggcatttaatttgggaaaggagacttttttcccaccat 3847926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 95
Target Start/End: Original strand, 37275095 - 37275128
Alignment:
Q  62 tttaatttgggaaaggagacttctttcccaccat 95  Q
    ||||||||||||||||||||||||||||||||||    
T  37275095 tttaatttgggaaaggagacttctttcccaccat 37275128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 42544493 - 42544537
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccaccatagaaaagtc 104  Q
    ||||||||||||||||| |||||| ||||||||||| ||||||||    
T  42544493 catttaatttgggaaagaagacttttttcccaccatggaaaagtc 42544537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 95
Target Start/End: Original strand, 11417692 - 11417727
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccaccat 95  Q
    ||||||||||||||||||||| ||||||||||||||    
T  11417692 catttaatttgggaaaggagagttctttcccaccat 11417727  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 95
Target Start/End: Complemental strand, 11417980 - 11417945
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccaccat 95  Q
    ||||||||||||||||||||| ||||||||||||||    
T  11417980 catttaatttgggaaaggagagttctttcccaccat 11417945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 28684275 - 28684232
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccaccatagaaaagt 103  Q
    |||||||||||||||||||||||| ||||| ||||||| |||||    
T  28684275 catttaatttgggaaaggagacttttttcctaccataggaaagt 28684232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 95
Target Start/End: Complemental strand, 29651375 - 29651340
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccaccat 95  Q
    ||||||||||||||||||||| ||||||||||||||    
T  29651375 catttaatttgggaaaggagagttctttcccaccat 29651340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 95
Target Start/End: Complemental strand, 36865760 - 36865725
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccaccat 95  Q
    ||||||||||||||||||||| ||||||||||||||    
T  36865760 catttaatttgggaaaggagagttctttcccaccat 36865725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 95
Target Start/End: Complemental strand, 38694997 - 38694962
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccaccat 95  Q
    ||||||||||||||||||||| ||||||||||||||    
T  38694997 catttaatttgggaaaggagagttctttcccaccat 38694962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 104
Target Start/End: Original strand, 55159186 - 55159229
Alignment:
Q  61 atttaatttgggaaaggagacttctttcccaccatagaaaagtc 104  Q
    ||||||||||||||||||||||||||||| ||||| | ||||||    
T  55159186 atttaatttgggaaaggagacttctttcctaccatgggaaagtc 55159229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 57 - 91
Target Start/End: Original strand, 28683510 - 28683544
Alignment:
Q  57 tggcatttaatttgggaaaggagacttctttccca 91  Q
    |||||||||||||||| ||||||||||||||||||    
T  28683510 tggcatttaatttggggaaggagacttctttccca 28683544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 623 - 653
Target Start/End: Complemental strand, 28683686 - 28683656
Alignment:
Q  623 gacaaagataagaagaaaaaggtgggaaaga 653  Q
    |||||||||||||||||||||||||||||||    
T  28683686 gacaaagataagaagaaaaaggtgggaaaga 28683656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 2e-41; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 374 - 468
Target Start/End: Complemental strand, 1366272 - 1366178
Alignment:
Q  374 aatccttatgtagatatcagtgtgtcaagtaagatagtatagatggaagaattcaatattccaatcaagattgatgataaatcagcaggtgatgt 468  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1366272 aatctttatgtagatatcagtgtgtcaagtaagatagtatagatggaagaatccaatattccaatcaagattgatgataaatcagcaggtgatgt 1366178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 374 - 468
Target Start/End: Complemental strand, 61896 - 61802
Alignment:
Q  374 aatccttatgtagatatcagtgtgtcaagtaagatagtatagatggaagaattcaatattccaatcaagattgatgataaatcagcaggtgatgt 468  Q
    |||| ||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  61896 aatctttatgtatatataagtgtgtcaagtaagatagtatagatggaagaatccaatattccaatcaagattgatgataaatcagcaggtgatgt 61802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 116 - 182
Target Start/End: Complemental strand, 1366562 - 1366496
Alignment:
Q  116 tccacactatattttcttcacatcatctctaaccttaacatcaacatggaaatccagaaggacatgg 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1366562 tccacactatattttcttcacatcatctctaaccttaacatcaacatggaaatccagaaggacatgg 1366496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 116 - 181
Target Start/End: Complemental strand, 62189 - 62124
Alignment:
Q  116 tccacactatattttcttcacatcatctctaaccttaacatcaacatggaaatccagaaggacatg 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  62189 tccacactatattttcttcacatcatctctaaccttaacatcaacatggaaatccagaaggacatg 62124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 104
Target Start/End: Original strand, 39254789 - 39254836
Alignment:
Q  57 tggcatttaatttgggaaaggagacttctttcccaccatagaaaagtc 104  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  39254789 tggcatttaatttgggaaaggagacttctttcccaccataggaaagtc 39254836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 161
Target Start/End: Complemental strand, 44752519 - 44752474
Alignment:
Q  116 tccacactatattttcttcacatcatctctaaccttaacatcaaca 161  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  44752519 tccacactatattttcttcacatcatctctaaccttaacaacaaca 44752474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 57 - 104
Target Start/End: Original strand, 61456 - 61503
Alignment:
Q  57 tggcatttaatttgggaaaggagacttctttcccaccatagaaaagtc 104  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||    
T  61456 tggcatttaatttgggaaaggagacttctttcccaccatgggaaagtc 61503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 57 - 104
Target Start/End: Original strand, 1365831 - 1365878
Alignment:
Q  57 tggcatttaatttgggaaaggagacttctttcccaccatagaaaagtc 104  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||    
T  1365831 tggcatttaatttgggaaaggagacttctttcccaccatgggaaagtc 1365878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 161
Target Start/End: Original strand, 39254890 - 39254933
Alignment:
Q  118 cacactatattttcttcacatcatctctaaccttaacatcaaca 161  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  39254890 cacactatattttcttcacatcatctctaaccttaacaacaaca 39254933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 62283 - 62239
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccaccatagaaaagtc 104  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||    
T  62283 catttaatttgagaaaggagacttctttcccaccataggaaagtc 62239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 44752616 - 44752576
Alignment:
Q  57 tggcatttaatttgggaaaggagacttctttcccaccatag 97  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  44752616 tggcatttaacttgggaaaggagacttctttcccaccatag 44752576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 1366649 - 1366612
Alignment:
Q  67 tttgggaaaggagacttctttcccaccatagaaaagtc 104  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  1366649 tttgggaaaggagacttcttttccaccatagaaaagtc 1366612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 12351162 - 12351207
Alignment:
Q  116 tccacactatattttcttcacatcatctctaaccttaacatcaaca 161  Q
    |||||||||||||||||||||||||| ||||| ||||||| |||||    
T  12351162 tccacactatattttcttcacatcatttctaaacttaacaacaaca 12351207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 155
Target Start/End: Original strand, 216492 - 216531
Alignment:
Q  116 tccacactatattttcttcacatcatctctaaccttaaca 155  Q
    |||||||| |||||| ||||||||||||||||||||||||    
T  216492 tccacactttatttttttcacatcatctctaaccttaaca 216531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 155
Target Start/End: Original strand, 693052 - 693091
Alignment:
Q  116 tccacactatattttcttcacatcatctctaaccttaaca 155  Q
    |||||||| |||||| ||||||||||||||||||||||||    
T  693052 tccacactttatttttttcacatcatctctaaccttaaca 693091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 155
Target Start/End: Original strand, 697261 - 697300
Alignment:
Q  116 tccacactatattttcttcacatcatctctaaccttaaca 155  Q
    |||||||| |||||| ||||||||||||||||||||||||    
T  697261 tccacactttatttttttcacatcatctctaaccttaaca 697300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 155
Target Start/End: Original strand, 730115 - 730154
Alignment:
Q  116 tccacactatattttcttcacatcatctctaaccttaaca 155  Q
    |||||||| |||||| ||||||||||||||||||||||||    
T  730115 tccacactttatttttttcacatcatctctaaccttaaca 730154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 155
Target Start/End: Original strand, 854010 - 854049
Alignment:
Q  116 tccacactatattttcttcacatcatctctaaccttaaca 155  Q
    |||||||| |||||| ||||||||||||||||||||||||    
T  854010 tccacactttatttttttcacatcatctctaaccttaaca 854049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 5035319 - 5035276
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccaccatagaaaagt 103  Q
    ||||||||||||||||||||| |||||| ||||||||| |||||    
T  5035319 catttaatttgggaaaggagagttcttttccaccataggaaagt 5035276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 39255798 - 39255751
Alignment:
Q  57 tggcatttaatttgggaaaggagacttctttcccaccatagaaaagtc 104  Q
    |||||||||| |||||||| ||||||||||||||||||| | ||||||    
T  39255798 tggcatttaacttgggaaatgagacttctttcccaccatgggaaagtc 39255751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 95
Target Start/End: Original strand, 41859315 - 41859350
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccaccat 95  Q
    ||||||||||||||||||||| ||||||||||||||    
T  41859315 catttaatttgggaaaggagagttctttcccaccat 41859350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 104
Target Start/End: Original strand, 44751610 - 44751657
Alignment:
Q  57 tggcatttaatttgggaaaggagacttctttcccaccatagaaaagtc 104  Q
    |||||||||| |||||||||||||||||||||||| ||| | ||||||    
T  44751610 tggcatttaacttgggaaaggagacttctttcccatcatgggaaagtc 44751657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 623 - 653
Target Start/End: Complemental strand, 61633 - 61603
Alignment:
Q  623 gacaaagataagaagaaaaaggtgggaaaga 653  Q
    |||||||||||||||||||||||||||||||    
T  61633 gacaaagataagaagaaaaaggtgggaaaga 61603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 95
Target Start/End: Original strand, 37639718 - 37639751
Alignment:
Q  62 tttaatttgggaaaggagacttctttcccaccat 95  Q
    ||||||||||||||||||| ||||||||||||||    
T  37639718 tttaatttgggaaaggagagttctttcccaccat 37639751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 60 - 92
Target Start/End: Complemental strand, 44098464 - 44098432
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccac 92  Q
    ||||||||||||||||||||| |||||||||||    
T  44098464 catttaatttgggaaaggagagttctttcccac 44098432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 116 - 182
Target Start/End: Original strand, 13655032 - 13655098
Alignment:
Q  116 tccacactatattttcttcacatcatctctaaccttaacatcaacatggaaatccagaaggacatgg 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13655032 tccacactatattttcttcacatcatctctaaccttaacatcaacatggaaatccagaaggacatgg 13655098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 13654938 - 13654982
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccaccatagaaaagtc 104  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  13654938 catttaatttgggaaaggagacttctttcccaccataggaaagtc 13654982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 60 - 103
Target Start/End: Original strand, 33001937 - 33001980
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccaccatagaaaagt 103  Q
    ||||||||||||||||||||| |||||||||||||| |||||||    
T  33001937 catttaatttgggaaaggagagttctttcccaccatggaaaagt 33001980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 91
Target Start/End: Complemental strand, 39167484 - 39167452
Alignment:
Q  59 gcatttaatttgggaaaggagacttctttccca 91  Q
    |||||||||||||||||||||||||||||||||    
T  39167484 gcatttaatttgggaaaggagacttctttccca 39167452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 41138016 - 41137972
Alignment:
Q  11 cacagaaataagtgtaaatgatgaaaaagataccattgacttcca 55  Q
    |||| |||||||||||||||||| ||||||||||||||| |||||    
T  41138016 cacaaaaataagtgtaaatgatggaaaagataccattgaattcca 41137972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 95
Target Start/End: Original strand, 8204125 - 8204160
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccaccat 95  Q
    ||||||||||||||||||||| ||||||||||||||    
T  8204125 catttaatttgggaaaggagagttctttcccaccat 8204160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 95
Target Start/End: Complemental strand, 15184060 - 15184025
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccaccat 95  Q
    ||||||||||||||||||||| ||||||||||||||    
T  15184060 catttaatttgggaaaggagagttctttcccaccat 15184025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 95
Target Start/End: Complemental strand, 33002859 - 33002824
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccaccat 95  Q
    ||||||||||||||||||||| ||||||||||||||    
T  33002859 catttaatttgggaaaggagagttctttcccaccat 33002824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 95
Target Start/End: Original strand, 39950409 - 39950444
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccaccat 95  Q
    ||||||||||||||||||||| ||||||||||||||    
T  39950409 catttaatttgggaaaggagagttctttcccaccat 39950444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 623 - 653
Target Start/End: Original strand, 13655529 - 13655559
Alignment:
Q  623 gacaaagataagaagaaaaaggtgggaaaga 653  Q
    |||||||||||||||||||||||||||||||    
T  13655529 gacaaagataagaagaaaaaggtgggaaaga 13655559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 57 - 91
Target Start/End: Complemental strand, 13655706 - 13655672
Alignment:
Q  57 tggcatttaatttgggaaaggagacttctttccca 91  Q
    ||||||||||||||||||| |||||||||||||||    
T  13655706 tggcatttaatttgggaaaagagacttctttccca 13655672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 8e-29; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 344 - 468
Target Start/End: Original strand, 33302360 - 33302476
Alignment:
Q  344 agaatagtgaaattaacaagttttatttaca-atccttatgtagatatcagtgtgtcaagtaagatagtatagatggaagaattcaatattccaatcaag 442  Q
    ||||||||||||||||||||||||||||||| ||  |||||||||||||| ||||||||| |||||         |||||||| ||||||||||||||||    
T  33302360 agaatagtgaaattaacaagttttatttacatatatttatgtagatatcactgtgtcaagcaagat---------ggaagaatccaatattccaatcaag 33302450  T
Q  443 attgatgataaatcagcaggtgatgt 468  Q
    ||||||||||||||||||||||||||    
T  33302451 attgatgataaatcagcaggtgatgt 33302476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 95
Target Start/End: Original strand, 668184 - 668219
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccaccat 95  Q
    ||||||||||||||||||||| ||||||||||||||    
T  668184 catttaatttgggaaaggagagttctttcccaccat 668219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 95
Target Start/End: Original strand, 7677422 - 7677457
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccaccat 95  Q
    ||||||||||||||||||||| ||||||||||||||    
T  7677422 catttaatttgggaaaggagaattctttcccaccat 7677457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 95
Target Start/End: Complemental strand, 7677852 - 7677817
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccaccat 95  Q
    ||||||||||||||||||||| ||||||||||||||    
T  7677852 catttaatttgggaaaggagagttctttcccaccat 7677817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 95
Target Start/End: Original strand, 17145627 - 17145662
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccaccat 95  Q
    ||||||||||||||||||||| ||||||||||||||    
T  17145627 catttaatttgggaaaggagagttctttcccaccat 17145662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 95
Target Start/End: Original strand, 37468915 - 37468950
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccaccat 95  Q
    ||||||||||||||||||||| ||||||||||||||    
T  37468915 catttaatttgggaaaggagagttctttcccaccat 37468950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 95
Target Start/End: Complemental strand, 37469048 - 37469013
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccaccat 95  Q
    ||||||||||||||||||||| ||||||||||||||    
T  37469048 catttaatttgggaaaggagagttctttcccaccat 37469013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 95
Target Start/End: Original strand, 38778859 - 38778894
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccaccat 95  Q
    ||||||||||||||||||||| ||||||||||||||    
T  38778859 catttaatttgggaaaggagagttctttcccaccat 38778894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 95
Target Start/End: Complemental strand, 38779606 - 38779571
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccaccat 95  Q
    ||||||||||||||||||||| ||||||||||||||    
T  38779606 catttaatttgggaaaggagagttctttcccaccat 38779571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 95
Target Start/End: Original strand, 41194518 - 41194553
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccaccat 95  Q
    ||||||||||||||||||||| ||||||||||||||    
T  41194518 catttaatttgggaaaggagagttctttcccaccat 41194553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 116 - 155
Target Start/End: Complemental strand, 9574520 - 9574481
Alignment:
Q  116 tccacactatattttcttcacatcatctctaaccttaaca 155  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  9574520 tccacactatattttcttcacatcatctctaaccttaaca 9574481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 9574617 - 9574570
Alignment:
Q  57 tggcatttaatttgggaaaggagacttctttcccaccatagaaaagtc 104  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||    
T  9574617 tggcatttaacttgggaaaggagacttctttcccaccataggaaagtc 9574570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 95
Target Start/End: Original strand, 7531831 - 7531869
Alignment:
Q  57 tggcatttaatttgggaaaggagacttctttcccaccat 95  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  7531831 tggcatttaatttgggaaaggagacttctttcctaccat 7531869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 95
Target Start/End: Original strand, 7193343 - 7193378
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccaccat 95  Q
    ||||||||||||||||||||| ||||||||||||||    
T  7193343 catttaatttgggaaaggagagttctttcccaccat 7193378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 95
Target Start/End: Complemental strand, 15083361 - 15083326
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccaccat 95  Q
    ||||||||||||||||||||| ||||||||||||||    
T  15083361 catttaatttgggaaaggagagttctttcccaccat 15083326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 95
Target Start/End: Complemental strand, 22582522 - 22582487
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccaccat 95  Q
    ||||||||||||||||||||| ||||||||||||||    
T  22582522 catttaatttgggaaaggagagttctttcccaccat 22582487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 95
Target Start/End: Complemental strand, 22587353 - 22587318
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccaccat 95  Q
    ||||||||||||||||||||| ||||||||||||||    
T  22587353 catttaatttgggaaaggagagttctttcccaccat 22587318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 95
Target Start/End: Complemental strand, 33480671 - 33480636
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccaccat 95  Q
    ||||||||||||||||||||| ||||||||||||||    
T  33480671 catttaatttgggaaaggagagttctttcccaccat 33480636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 57 - 87
Target Start/End: Complemental strand, 7532486 - 7532456
Alignment:
Q  57 tggcatttaatttgggaaaggagacttcttt 87  Q
    |||||||||||||||||||||||||||||||    
T  7532486 tggcatttaatttgggaaaggagacttcttt 7532456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 95
Target Start/End: Complemental strand, 33018457 - 33018424
Alignment:
Q  62 tttaatttgggaaaggagacttctttcccaccat 95  Q
    ||||||||||||||||||| ||||||||||||||    
T  33018457 tttaatttgggaaaggagagttctttcccaccat 33018424  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 17227994 - 17227947
Alignment:
Q  57 tggcatttaatttgggaaaggagacttctttcccaccatagaaaagtc 104  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||    
T  17227994 tggcatttaatttgggaaaggagacttctttcccaccatgaaaaagtc 17227947  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 32490238 - 32490195
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccaccatagaaaagt 103  Q
    ||||||||||||||||||||| |||||||||||||| |||||||    
T  32490238 catttaatttgggaaaggagagttctttcccaccatggaaaagt 32490195  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 95
Target Start/End: Original strand, 17226970 - 17227008
Alignment:
Q  57 tggcatttaatttgggaaaggagacttctttcccaccat 95  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  17226970 tggcatttaatttgggaaaggagatttctttcccaccat 17227008  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 103
Target Start/End: Original strand, 36750050 - 36750093
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccaccatagaaaagt 103  Q
    ||||||||||||||||||||| |||||| ||||||| |||||||    
T  36750050 catttaatttgggaaaggagagttcttttccaccatggaaaagt 36750093  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 95
Target Start/End: Complemental strand, 36750480 - 36750445
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccaccat 95  Q
    ||||||||||||||||||||| ||||||||||||||    
T  36750480 catttaatttgggaaaggagagttctttcccaccat 36750445  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 38923708 - 38923665
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccaccatagaaaagt 103  Q
    |||||||||||||||| |||| |||||||||||||| |||||||    
T  38923708 catttaatttgggaaatgagagttctttcccaccatggaaaagt 38923665  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 42145321 - 42145278
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccaccatagaaaagt 103  Q
    |||||||||||||||||||||||| ||| ||||||||| |||||    
T  42145321 catttaatttgggaaaggagactttttttccaccataggaaagt 42145278  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 44687206 - 44687163
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccaccatagaaaagt 103  Q
    ||||||||||||||||||||| |||||| ||||||| |||||||    
T  44687206 catttaatttgggaaaggagaattcttttccaccatggaaaagt 44687163  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 116 - 155
Target Start/End: Complemental strand, 37874910 - 37874871
Alignment:
Q  116 tccacactatattttcttcacatcatctctaaccttaaca 155  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  37874910 tccacactatattttcttcacatcatctctaaccttaaca 37874871  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 95
Target Start/End: Original strand, 51987829 - 51987867
Alignment:
Q  57 tggcatttaatttgggaaaggagacttctttcccaccat 95  Q
    |||||||||||||||||||||||||||||||||||||||    
T  51987829 tggcatttaatttgggaaaggagacttctttcccaccat 51987867  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 35616821 - 35616774
Alignment:
Q  57 tggcatttaatttgggaaaggagacttctttcccaccatagaaaagtc 104  Q
    |||||||||| |||||||||||||||||||||||||||| | ||||||    
T  35616821 tggcatttaacttgggaaaggagacttctttcccaccatgggaaagtc 35616774  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 48972488 - 48972445
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccaccatagaaaagt 103  Q
    ||||||||||||||||||||| |||||||||||||| |||||||    
T  48972488 catttaatttgggaaaggagagttctttcccaccatggaaaagt 48972445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 95
Target Start/End: Complemental strand, 51988510 - 51988472
Alignment:
Q  57 tggcatttaatttgggaaaggagacttctttcccaccat 95  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  51988510 tggcatttaatttgggaaaggagacttcttttccaccat 51988472  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 95
Target Start/End: Original strand, 193855 - 193890
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccaccat 95  Q
    ||||||||||||||||||||| ||||||||||||||    
T  193855 catttaatttgggaaaggagagttctttcccaccat 193890  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 91
Target Start/End: Original strand, 8560844 - 8560875
Alignment:
Q  60 catttaatttgggaaaggagacttctttccca 91  Q
    ||||||||||||||||||||||||||||||||    
T  8560844 catttaatttgggaaaggagacttctttccca 8560875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 95
Target Start/End: Original strand, 16270212 - 16270247
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccaccat 95  Q
    ||||||||||||||||||||| ||||||||||||||    
T  16270212 catttaatttgggaaaggagagttctttcccaccat 16270247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 95
Target Start/End: Complemental strand, 23440908 - 23440873
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccaccat 95  Q
    ||||||||||||||||||||| ||||||||||||||    
T  23440908 catttaatttgggaaaggagagttctttcccaccat 23440873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 95
Target Start/End: Original strand, 51974442 - 51974477
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccaccat 95  Q
    ||||||||||||||||||||| ||||||||||||||    
T  51974442 catttaatttgggaaaggagagttctttcccaccat 51974477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 57 - 95
Target Start/End: Original strand, 35615769 - 35615807
Alignment:
Q  57 tggcatttaatttgggaaaggagacttctttcccaccat 95  Q
    |||||||||| |||| |||||||||||||||||||||||    
T  35615769 tggcatttaacttggaaaaggagacttctttcccaccat 35615807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 37874069 - 37874113
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccaccatagaaaagtc 104  Q
    ||||||| |||||||| ||||||||||||||||||| | ||||||    
T  37874069 catttaacttgggaaatgagacttctttcccaccatgggaaagtc 37874113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 60 - 92
Target Start/End: Original strand, 48971710 - 48971742
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccac 92  Q
    ||||||||||||||||||||| |||||||||||    
T  48971710 catttaatttgggaaaggagagttctttcccac 48971742  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 57 - 104
Target Start/End: Original strand, 5276467 - 5276514
Alignment:
Q  57 tggcatttaatttgggaaaggagacttctttcccaccatagaaaagtc 104  Q
    |||||||||| |||||||||||||||||||||||||||| | ||||||    
T  5276467 tggcatttaacttgggaaaggagacttctttcccaccatgggaaagtc 5276514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 116 - 155
Target Start/End: Complemental strand, 5277344 - 5277305
Alignment:
Q  116 tccacactatattttcttcacatcatctctaaccttaaca 155  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  5277344 tccacactatattttcttcacatcatctccaaccttaaca 5277305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 60 - 103
Target Start/End: Original strand, 13134323 - 13134366
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccaccatagaaaagt 103  Q
    ||||||||||||||||||||| |||||||||||||||| |||||    
T  13134323 catttaatttgggaaaggagagttctttcccaccataggaaagt 13134366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 14574042 - 14574006
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccaccata 96  Q
    ||||||||||||||||||||| |||||||||||||||    
T  14574042 catttaatttgggaaaggagagttctttcccaccata 14574006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 95
Target Start/End: Original strand, 21471022 - 21471057
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccaccat 95  Q
    ||||||||||||||||||||| ||||||||||||||    
T  21471022 catttaatttgggaaaggagagttctttcccaccat 21471057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 95
Target Start/End: Complemental strand, 21471997 - 21471962
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccaccat 95  Q
    ||||||||||||||||||||| ||||||||||||||    
T  21471997 catttaatttgggaaaggagagttctttcccaccat 21471962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 57 - 95
Target Start/End: Original strand, 41042544 - 41042582
Alignment:
Q  57 tggcatttaatttgggaaaggagacttctttcccaccat 95  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  41042544 tggcatttaatttgagaaaggaggcttctttcccaccat 41042582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 57 - 87
Target Start/End: Original strand, 45139694 - 45139724
Alignment:
Q  57 tggcatttaatttgggaaaggagacttcttt 87  Q
    |||||||||||||||||||||||||||||||    
T  45139694 tggcatttaatttgggaaaggagacttcttt 45139724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 95
Target Start/End: Complemental strand, 203 - 168
Alignment:
Q  60 catttaatttgggaaaggagacttctttcccaccat 95  Q
    ||||||||||||||||||||| ||||||||||||||    
T  203 catttaatttgggaaaggagagttctttcccaccat 168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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