View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19380_low_81 (Length: 203)
Name: NF19380_low_81
Description: NF19380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19380_low_81 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 55896647 - 55896479
Alignment:
| Q |
18 |
gtatttacatcacaacaagaaagaaataaacaataaaagatccctttgagtttggccaaaagcaaaagcaaccgattgaagaatctacacaaagcaaagg |
117 |
Q |
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| T |
55896647 |
gtatttacatcacaacaagaaagaaataaacaataaaagatccctttgagtttggccaaaagcaaaagcaaccgattgaagaatctacacaaagcaaagg |
55896548 |
T |
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| Q |
118 |
gaaggaggagacaattttagcaccatcatgttgaggcttacgttggccttgtgtgttttgagtagcata |
186 |
Q |
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| T |
55896547 |
gaaggaggagacaattttagcaccatcatgttgaggcttacgttggccttgtgtgttttgagtagcata |
55896479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 1028447 - 1028500
Alignment:
| Q |
18 |
gtatttacatcacaacaagaaagaaataaacaataaaagatccctttgagtttg |
71 |
Q |
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| T |
1028447 |
gtatttacatcacaacaagaaagaaataaacaataaaagatccctttgagtttg |
1028500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 109
Target Start/End: Original strand, 1028525 - 1028554
Alignment:
| Q |
80 |
caaaagcaaccgattgaagaatctacacaa |
109 |
Q |
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| T |
1028525 |
caaaagcaaccgattgaagaatctacacaa |
1028554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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