View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19381_high_11 (Length: 489)
Name: NF19381_high_11
Description: NF19381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19381_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 13 - 473
Target Start/End: Complemental strand, 38553053 - 38552594
Alignment:
| Q |
13 |
ataatatcagctttttaagaggtttggatgccctattggtgaatgttgcataattttagtactttcagaatcaaataaatggttcactattactaagtga |
112 |
Q |
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| T |
38553053 |
ataatatcagctttttaagaggtttggatgccctattggtgaatgttgcataattttagtactttcagaatcaaataaatggttcactattactaagtga |
38552954 |
T |
|
| Q |
113 |
tagtattgttctttctttatcacacacaagtcaatgatttcgatttcaaaggactactccttcgcttgttgactccgcaactaacaaggaaaagaataga |
212 |
Q |
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| T |
38552953 |
tagtattgttctttctttatcacacacaagtcaatgatttcgatttcaaaggactactccttcgcttgttgactccgcaactaacaaggaaaagaataga |
38552854 |
T |
|
| Q |
213 |
actaatcaatatatgcatgagtggaatagaatgggaccaggttttgctgctctaaaaacaacacactgtttttgacctcaaccgtttatctgaaatcgaa |
312 |
Q |
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| T |
38552853 |
actaatcaatatatgcattagtggaatagaatggaaccaggttttgctgctgtaaaaacaacata--gttttttatctcaaccgtttatctgaaatcgaa |
38552756 |
T |
|
| Q |
313 |
cggttgatatcaaaaacggtatatgtttagttaaaataatctttatcatccaactgtgattggacagttattactgattacagttccatgcagagaattc |
412 |
Q |
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| T |
38552755 |
tgattgatatcaaaaacggtgtatttttagttaaaataatctttgtcatccaagtgtgattggacagctattactcattacagctccatgcagagaatcc |
38552656 |
T |
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| Q |
413 |
tattccaataaaatggatatgtttgtggaaaacttagata-cccacattgatcactatataa |
473 |
Q |
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| T |
38552655 |
tattccaatagaatggatatgtttgtggaaaacttagataccccaaattgatcactatataa |
38552594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 289 - 392
Target Start/End: Complemental strand, 4656453 - 4656350
Alignment:
| Q |
289 |
ctcaaccgtttatctgaaatcgaacggttgatatcaaaaacggtatatgtttagttaaaataatctttatcatccaactgtgattggacagttattactg |
388 |
Q |
| |
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|||||||||| |||| ||||||||| ||||| || |||||| |||||| ||||||||||||||||||| ||||| || |||| | |||| | ||| |||| |
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| T |
4656453 |
ctcaaccgttcatctcaaatcgaacagttgaaattaaaaactgtatatttttagttaaaataatctttgtcatctaattgtggtcggacggctatcactg |
4656354 |
T |
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| Q |
389 |
atta |
392 |
Q |
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|||| |
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| T |
4656353 |
atta |
4656350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 338 - 395
Target Start/End: Original strand, 9252369 - 9252426
Alignment:
| Q |
338 |
tttagttaaaataatctttatcatccaactgtgattggacagttattactgattacag |
395 |
Q |
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| T |
9252369 |
tttagttaaaacaatctttaccatccaactgtgatcggacagctatcattgattacag |
9252426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 338 - 394
Target Start/End: Original strand, 29054360 - 29054416
Alignment:
| Q |
338 |
tttagttaaaataatctttatcatccaactgtgattggacagttattactgattaca |
394 |
Q |
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||||||||||| ||||| ||||||||||||||||| |||| | ||| |||||||||| |
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| T |
29054360 |
tttagttaaaacaatctctatcatccaactgtgatcggacggctatcactgattaca |
29054416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 338 - 394
Target Start/End: Original strand, 38836709 - 38836765
Alignment:
| Q |
338 |
tttagttaaaataatctttatcatccaactgtgattggacagttattactgattaca |
394 |
Q |
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|||| |||||| ||||||| ||||||||||||||| |||| | ||| |||||||||| |
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| T |
38836709 |
tttatttaaaacaatctttgtcatccaactgtgatcggacggctatcactgattaca |
38836765 |
T |
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