View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19381_high_12 (Length: 480)

Name: NF19381_high_12
Description: NF19381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19381_high_12
NF19381_high_12
[»] chr8 (9 HSPs)
chr8 (79-443)||(6744107-6744479)
chr8 (79-443)||(6654369-6654741)
chr8 (79-443)||(6734771-6735143)
chr8 (90-265)||(18004484-18004659)
chr8 (90-266)||(30702412-30702587)
chr8 (90-330)||(30288304-30288553)
chr8 (82-154)||(28211144-28211216)
chr8 (291-335)||(18004694-18004738)
chr8 (290-334)||(23636925-23636969)
[»] chr5 (8 HSPs)
chr5 (78-378)||(22166285-22166593)
chr5 (82-223)||(42366246-42366387)
chr5 (79-242)||(6218582-6218745)
chr5 (259-443)||(6217998-6218181)
chr5 (88-265)||(24233702-24233879)
chr5 (88-211)||(35246200-35246323)
chr5 (82-155)||(31293471-31293544)
chr5 (104-146)||(19841862-19841904)
[»] chr1 (8 HSPs)
chr1 (78-265)||(51987628-51987814)
chr1 (79-372)||(3854153-3854453)
chr1 (262-470)||(51988515-51988729)
chr1 (97-266)||(32590678-32590847)
chr1 (88-264)||(4693888-4694064)
chr1 (88-184)||(51410892-51410988)
chr1 (88-154)||(43912953-43913019)
chr1 (89-152)||(42914022-42914085)
[»] chr2 (7 HSPs)
chr2 (85-358)||(33560193-33560473)
chr2 (90-335)||(35431197-35431451)
chr2 (113-265)||(23249851-23250003)
chr2 (88-220)||(28920305-28920437)
chr2 (98-265)||(3250235-3250402)
chr2 (97-148)||(24490063-24490114)
chr2 (292-331)||(3250438-3250477)
[»] chr7 (5 HSPs)
chr7 (290-443)||(38432557-38432708)
chr7 (89-154)||(42266153-42266218)
chr7 (88-163)||(34148506-34148581)
chr7 (88-163)||(34178543-34178618)
chr7 (291-335)||(923717-923761)
[»] chr4 (4 HSPs)
chr4 (90-335)||(55109437-55109691)
chr4 (88-156)||(17403740-17403808)
chr4 (82-148)||(19145561-19145627)
chr4 (90-156)||(39235839-39235905)
[»] chr6 (7 HSPs)
chr6 (97-265)||(15472972-15473140)
chr6 (97-211)||(18093505-18093619)
chr6 (97-243)||(15170291-15170437)
chr6 (97-243)||(15179063-15179209)
chr6 (131-265)||(15183901-15184035)
chr6 (98-217)||(15160280-15160399)
chr6 (82-154)||(26585841-26585913)
[»] scaffold1243 (1 HSPs)
scaffold1243 (131-265)||(1834-1968)
[»] chr3 (6 HSPs)
chr3 (88-184)||(54264839-54264934)
chr3 (88-154)||(28033672-28033738)
chr3 (88-184)||(31887976-31888072)
chr3 (90-154)||(11295016-11295080)
chr3 (267-335)||(28033860-28033928)
chr3 (90-142)||(31882088-31882140)


Alignment Details
Target: chr8 (Bit Score: 170; Significance: 5e-91; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 79 - 443
Target Start/End: Complemental strand, 6744479 - 6744107
Alignment:
Q  79 gacaagaagactactccctaacacccatacaaattaaagggtgtcgccatctgtcattataactgaaagctgaagttaacctattcgctcttaaccaaga 178  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||| | |||| |||| |||||| ||||    
T  6744479 gacaagaagactactccctaacacccatacaaattaacgggtgtcgccaccagtcattataactgaaagctgaagtgagcctactcgcccttaactaaga 6744380  T
Q  179 aaaagattctgactttactttgtctaataattgaaccaagtcttgtactttgtttctaaagatcctattgattctttccttcc---------aaacgcaa 269  Q
    ||||||  |  ||||||||||||||| |||||||| ||||||  || |||||||| | |||||||||||| ||||||||||||         ||||||||    
T  6744379 aaaagaagcaaactttactttgtctagtaattgaagcaagtccagtgctttgtttttgaagatcctattgtttctttccttccaaactgtccaaacgcaa 6744280  T
Q  270 ccatgccaaatcactccaaagaaagaatgcgtaaatcgcggtaacaccgccatgtgaccaaactgaattagatacttacgaacagagtcaaagagaaatg 369  Q
     |||| |  ||||||| |||||||||||| |||||||| ||| ||  ||||||||||||||||||||| |||| || || ||||||||| | ||||||||    
T  6744279 gcatgtccgatcactctaaagaaagaatgtgtaaatcgtggtgacctcgccatgtgaccaaactgaataagatgctcacaaacagagtc-aggagaaatg 6744181  T
Q  370 aatgagatatgaagccactaataaacctcgtgccatacactgtcaaatatgtcacatcagaagagaagatgact 443  Q
    |||||||  ||||||||||||||||||||||||||||||||| |||| |||||||||| ||| |||||||||||    
T  6744180 aatgagacctgaagccactaataaacctcgtgccatacactgccaaagatgtcacatcggaaaagaagatgact 6744107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 79 - 443
Target Start/End: Complemental strand, 6654741 - 6654369
Alignment:
Q  79 gacaagaagactactccctaacacccatacaaattaaagggtgtcgccatctgtcattataactgaaagctgaagttaacctattcgctcttaaccaaga 178  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||| | |||||||||||||||||||||||| | |||| | || |||||  ||||    
T  6654741 gacaagaagactactccctaacacccatacaaattaacggatgtcgccaccagtcattataactgaaagctgaagtgagcctacttgcccttaattaaga 6654642  T
Q  179 aaaagattctgactttactttgtctaataattgaaccaagtcttgtactttgtttctaaagatcctattgattctttccttccaaac---------gcaa 269  Q
    ||||||  |  ||||||||||||||| |||||||| ||||||  || |||||||| | |||||||||||| ||||||||||||||||         ||||    
T  6654641 aaaagaagcaaactttactttgtctagtaattgaagcaagtccagtgctttgtttttgaagatcctattgtttctttccttccaaactgtccaaacgcaa 6654542  T
Q  270 ccatgccaaatcactccaaagaaagaatgcgtaaatcgcggtaacaccgccatgtgaccaaactgaattagatacttacgaacagagtcaaagagaaatg 369  Q
     |||| || ||||||| |||||||||||| |||||||||||| ||  ||||||||||||||||||||| |||| || |||||||||||| | ||||||||    
T  6654541 gcatgtcagatcactctaaagaaagaatgtgtaaatcgcggtgacctcgccatgtgaccaaactgaataagatgctcacgaacagagtc-aggagaaatg 6654443  T
Q  370 aatgagatatgaagccactaataaacctcgtgccatacactgtcaaatatgtcacatcagaagagaagatgact 443  Q
    |||||||  |||||||||||||||||||||||||||||| || |||| |||||||||| ||| |||||||||||    
T  6654442 aatgagacctgaagccactaataaacctcgtgccatacagtgccaaagatgtcacatcggaaaagaagatgact 6654369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 79 - 443
Target Start/End: Complemental strand, 6735143 - 6734771
Alignment:
Q  79 gacaagaagactactccctaacacccatacaaattaaagggtgtcgccatctgtcattataactgaaagctgaagttaacctattcgctcttaaccaaga 178  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||| | |||||||||||||||||||||||| | |||| | || |||||  ||||    
T  6735143 gacaagaagactactccctaacacccatacaaattaacggatgtcgccaccagtcattataactgaaagctgaagtgagcctactagcccttaaataaga 6735044  T
Q  179 aaaagattctgactttactttgtctaataattgaaccaagtcttgtactttgtttctaaagatcctattgattctttccttcc---------aaacgcaa 269  Q
    ||||||  |  ||||||||||||||| |||||||| ||||||  || |||||||| | |||||||||||| ||||||||||||         ||||||||    
T  6735043 aaaagaagcaaactttactttgtctagtaattgaagcaagtccagtgctttgtttttgaagatcctattgtttctttccttccaaactgtccaaacgcaa 6734944  T
Q  270 ccatgccaaatcactccaaagaaagaatgcgtaaatcgcggtaacaccgccatgtgaccaaactgaattagatacttacgaacagagtcaaagagaaatg 369  Q
     |||| || ||||||| |||||||||||| |||||||| ||| ||  ||||||||||||||||||||| |||| || || ||||||||| | ||||||||    
T  6734943 gcatgtcagatcactctaaagaaagaatgtgtaaatcgaggtgacctcgccatgtgaccaaactgaataagatgctcacaaacagagtc-aggagaaatg 6734845  T
Q  370 aatgagatatgaagccactaataaacctcgtgccatacactgtcaaatatgtcacatcagaagagaagatgact 443  Q
    |||||||  |||||||||||||||||||||||||||||| || |||| |||||||||| ||| |||||||||||    
T  6734844 aatgagacctgaagccactaataaacctcgtgccatacaatgccaaagatgtcacatcggaaaagaagatgact 6734771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 90 - 265
Target Start/End: Original strand, 18004484 - 18004659
Alignment:
Q  90 tactccctaacacccatacaaattaaagggtgtcgccatctgtcattataactgaaagctgaagttaacctattcgctcttaaccaagaaaaagattctg 189  Q
    |||||| ||||||||||||||||||||||||| ||||| | |||||||||| ||||||||||||||| |||||| ||  ||||||||||||||||  |      
T  18004484 tactccataacacccatacaaattaaagggtgccgccaccggtcattataattgaaagctgaagttagcctattagcctttaaccaagaaaaagacacaa 18004583  T
Q  190 actttactttgtctaataattgaaccaagtcttgtactttgtttctaaagatcctattgattctttccttccaaac 265  Q
    ||||||| ||||| ||   |||  ||||||||| | |||||| | | |||||||| ||| ||||||||||||||||    
T  18004584 actttacattgtcaaaatgttgttccaagtcttctgctttgtctttgaagatcctgttgtttctttccttccaaac 18004659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 90 - 266
Target Start/End: Original strand, 30702412 - 30702587
Alignment:
Q  90 tactccctaacacccatacaaattaaagggtgtcgccatctgtcattataactgaaagctgaagttaacctattcgctcttaaccaagaaaaagattctg 189  Q
    |||||| ||||||||||||||||||||||||| ||||| | |||||||||||||||||| ||||||| |||||| ||  |||| |||||||||||  |      
T  30702412 tactccataacacccatacaaattaaagggtgccgccaccagtcattataactgaaagcggaagttagcctattagcctttaatcaagaaaaagacacaa 30702511  T
Q  190 actttactttgtctaataattgaaccaagtcttgtactttgtttctaaagatcctattgattctttccttccaaacg 266  Q
    ||||||| ||||| || | ||   ||||||||||| |||||| ||| ||||| || ||| ||||||| |||||||||    
T  30702512 actttacattgtcaaaaatttattccaagtcttgtgctttgtctctgaagat-ctgttgtttctttctttccaaacg 30702587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 90 - 330
Target Start/End: Complemental strand, 30288553 - 30288304
Alignment:
Q  90 tactccctaacacccatacaaattaaagggtgtcgccatctgtcattataactgaaagctgaagttaacctattcgctcttaaccaagaaaaagattctg 189  Q
    |||||| ||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||| |||||| ||  ||||| ||||||| ||  |      
T  30288553 tactccataacacccatacaaattaaagggtgccgccacccgtcattataactgaaagctgaagttagcctattagcctttaacgaagaaaatgacacaa 30288454  T
Q  190 actttactttgtctaataattgaaccaagtcttgtactttgtttctaaagatcctattgattctttccttccaaacg---------caaccatgccaaat 280  Q
    |  |||| ||||| || | ||   || |||||| |  ||||| | | |||||||| ||| |||||||||||||||||         ||| ||||||| ||    
T  30288453 atattacattgtcaaagagtttttcctagtcttttgttttgtctttgaagatcctgttgtttctttccttccaaacgatccaaacacaagcatgccatat 30288354  T
Q  281 cactccaaagaaagaatgcgtaaatcgcggtaacaccgccatgtgaccaa 330  Q
    |||   ||| |||||||| ||||||||||||||| |||||||||||||||    
T  30288353 caccttaaaaaaagaatgagtaaatcgcggtaaccccgccatgtgaccaa 30288304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 28211144 - 28211216
Alignment:
Q  82 aagaagactactccctaacacccatacaaattaaagggtgtcgccatctgtcattataactgaaagctgaagt 154  Q
    ||||| ||||||||||||||| | |||| | |||||| || ||||||| |||||||||||||||||| |||||    
T  28211144 aagaaaactactccctaacacacgtacataataaaggatgccgccatcagtcattataactgaaagcagaagt 28211216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 18004694 - 18004738
Alignment:
Q  291 aaagaatgcgtaaatcgcggtaacaccgccatgtgaccaaactga 335  Q
    |||||||| ||||||||| ||||| ||||||| ||||||||||||    
T  18004694 aaagaatgagtaaatcgcagtaaccccgccatatgaccaaactga 18004738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 334
Target Start/End: Original strand, 23636925 - 23636969
Alignment:
Q  290 gaaagaatgcgtaaatcgcggtaacaccgccatgtgaccaaactg 334  Q
    ||||||||| |||||||| |||||| ||||||| |||||||||||    
T  23636925 gaaagaatgggtaaatcgtggtaaccccgccatatgaccaaactg 23636969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 170; Significance: 5e-91; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 78 - 378
Target Start/End: Complemental strand, 22166593 - 22166285
Alignment:
Q  78 tgacaagaagactactccctaacacccatacaaattaaagggtgtcgccatctgtcattataactgaaagctgaagttaacctattcgctcttaaccaag 177  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| | || |||||||||||||||| |||||| ||||||||| ||||||||||    
T  22166593 tgacaagaagactattccctaacacccatacaaattaaagggtgtcgccaccagtaattataactgaaagctcaagttagcctattcgcccttaaccaag 22166494  T
Q  178 aaaaagattctgactttactttgtctaataattgaaccaagtcttgtactttgtttctaaagatcctattgattctttccttccaa---------acgca 268  Q
    |||||||| |  |||||||||||| ||||||||||||||||||| || |||||||||| |||||||||||| ||||||||||||||         | |||    
T  22166493 aaaaagatacaaactttactttgtttaataattgaaccaagtctagtgctttgtttctgaagatcctattgtttctttccttccaaattgtccatatgca 22166394  T
Q  269 accatgccaaatcactccaaagaaagaatgcgtaaatcgcggtaacaccgccatgtgaccaaactgaattagatacttacgaacagagtcaaagagaaat 368  Q
    | |||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||| |||||||||| || ||||||| |||| | |||||||    
T  22166393 agcatgccaaatcactctgaagaaagaatgcgtaaatcgcggtaaccccgccatgtgaccaaattgaattagatgctcacgaacatagtc-aggagaaat 22166295  T
Q  369 gaatgagata 378  Q
    ||||||||||    
T  22166294 gaatgagata 22166285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 82 - 223
Target Start/End: Complemental strand, 42366387 - 42366246
Alignment:
Q  82 aagaagactactccctaacacccatacaaattaaagggtgtcgccatctgtcattataactgaaagctgaagttaacctattcgctcttaaccaagaaaa 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||| ||||||||| ||||||||||||||    
T  42366387 aagaagactactccctaacacccatacaaattaaagggtgtcgccaccggtcattataattgaaagctgaagttagcctattcgcccttaaccaagaaaa 42366288  T
Q  182 agattctgactttactttgtctaataattgaaccaagtcttg 223  Q
    |||| |  |||| |||||||||||||||||||||||||||||    
T  42366287 agatacaaacttaactttgtctaataattgaaccaagtcttg 42366246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 79 - 242
Target Start/End: Complemental strand, 6218745 - 6218582
Alignment:
Q  79 gacaagaagactactccctaacacccatacaaattaaagggtgtcgccatctgtcattataactgaaagctgaagttaacctattcgctcttaaccaaga 178  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||| ||| | |||||||||||||||||||||||| | ||||||||| |||||||||||    
T  6218745 gacaagaagactactccctaacacctatacaaattaacgggtgtcaccaccagtcattataactgaaagctgaagtgagcctattcgcccttaaccaaga 6218646  T
Q  179 aaaagattctgactttactttgtctaataattgaaccaagtcttgtactttgtttctaaagatc 242  Q
    ||||||| |  ||||||||||||||| |||||||||||||||  || |||||||| | ||||||    
T  6218645 aaaagatacaaactttactttgtctagtaattgaaccaagtccagtgctttgtttttgaagatc 6218582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 259 - 443
Target Start/End: Complemental strand, 6218181 - 6217998
Alignment:
Q  259 tccaaacgcaaccatgccaaatcactccaaagaaagaatgcgtaaatcgcggtaacaccgccatgtgaccaaactgaattagatacttacgaacagagtc 358  Q
    |||||||| || |||| || |||||||  ||||||||||| |||||||| |||||| |||||||||||||||||||||| ||||  | ||||||| ||||    
T  6218181 tccaaacgtaagcatgtcagatcactctgaagaaagaatgtgtaaatcgtggtaaccccgccatgtgaccaaactgaataagatgttcacgaacaaagtc 6218082  T
Q  359 aaagagaaatgaatgagatatgaagccactaataaacctcgtgccatacactgtcaaatatgtcacatcagaagagaagatgact 443  Q
    |  |||||||||||||||  |||||||||| ||||||| |||||||||||||| |||| |||||||||  ||| |||||||||||    
T  6218081 ag-gagaaatgaatgagacctgaagccactgataaaccccgtgccatacactgccaaagatgtcacattggaaaagaagatgact 6217998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 88 - 265
Target Start/End: Original strand, 24233702 - 24233879
Alignment:
Q  88 actactccctaacacccatacaaattaaagggtgtcgccatctgtcattataactgaaagctgaagttaacctattcgctcttaaccaagaaaaagattc 187  Q
    |||||||| |||||||||||||| ||||| |||| ||||| | |||||||||||||||||| ||||||||||||| |||  ||| ||||||||||||  |    
T  24233702 actactccataacacccatacaagttaaatggtgccgccaccagtcattataactgaaagcagaagttaacctatgcgcctttagccaagaaaaagaaac 24233801  T
Q  188 tgactttactttgtctaataattgaaccaagtcttgtactttgtttctaaagatcctattgattctttccttccaaac 265  Q
      ||||||| ||||||||||||||   ||| ||   | |||||||| |||||||  | ||| ||||||||||||||||    
T  24233802 aaactttacattgtctaataattgtgtcaaatcccatgctttgtttttaaagattttgttgtttctttccttccaaac 24233879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 88 - 211
Target Start/End: Original strand, 35246200 - 35246323
Alignment:
Q  88 actactccctaacacccatacaaattaaagggtgtcgccatctgtcattataactgaaagctgaagttaacctattcgctcttaaccaagaaaaagattc 187  Q
    |||||||| |||||| ||||||| |||||||||| ||||| | |||||||||||||||||||||||| ||| |||  ||  ||| ||||||||||||  |    
T  35246200 actactccataacactcatacaagttaaagggtgccgccaccagtcattataactgaaagctgaagtgaacatatgagcctttagccaagaaaaagaaac 35246299  T
Q  188 tgactttactttgtctaataattg 211  Q
      ||||||| ||||||||||||||    
T  35246300 aaactttacattgtctaataattg 35246323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 82 - 155
Target Start/End: Original strand, 31293471 - 31293544
Alignment:
Q  82 aagaagactactccctaacacccatacaaattaaagggtgtcgccatctgtcattataactgaaagctgaagtt 155  Q
    ||||| ||||| |||||||||||||||| | ||||||||| ||||||| |||||||||||||||| | ||||||    
T  31293471 aagaaaactaccccctaacacccatacataataaagggtgccgccatcagtcattataactgaaaacagaagtt 31293544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 146
Target Start/End: Original strand, 19841862 - 19841904
Alignment:
Q  104 catacaaattaaagggtgtcgccatctgtcattataactgaaa 146  Q
    |||||||| ||||||||| ||||||| ||||||||||||||||    
T  19841862 catacaaagtaaagggtgccgccatccgtcattataactgaaa 19841904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 160; Significance: 4e-85; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 78 - 265
Target Start/End: Original strand, 51987628 - 51987814
Alignment:
Q  78 tgacaagaagactactccctaacacccatacaaattaaagggtgtcgccatctgtcattataactgaaagctgaagttaacctattcgctcttaaccaag 177  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |    
T  51987628 tgacaagaagactactccctaacacccatacaaattaaagggtgtcgccataggtcattataactgaaagctgaagttaacctattcgctcttaaccagg 51987727  T
Q  178 aaaaagattctgactttactttgtctaataattgaaccaagtcttgtactttgtttctaaagatcctattgattctttccttccaaac 265  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  51987728 aaaaagattcttactttactttgtctaataattgaaccaagtcttgtactttgtttctaaagttcc-attgattctttccttccaaac 51987814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 79 - 372
Target Start/End: Original strand, 3854153 - 3854453
Alignment:
Q  79 gacaagaagactactccctaacacccatacaaattaaagggtgtcgccatctgtcattataactgaaagctgaagttaacctattcgctcttaaccaaga 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| | | ||||||| |||||||||||    
T  3854153 gacaagaagactactccctaacacccatacaaattaaagggtgtcgccaccagtcattataactgaaagctgaagtgagcttattcgcccttaaccaaga 3854252  T
Q  179 aaaagattctgactttactttgtctaataattgaaccaagtcttgtactttgtttctaaagatcctattgattctttccttc---------caaacgcaa 269  Q
    ||||||| |  ||||||||| |||||||||||||||||||||| || |||||||| | || ||||||||| |||||||||||         |||||||||    
T  3854253 aaaagatacaaactttacttcgtctaataattgaaccaagtctagtgctttgttttttaaaatcctattgtttctttccttccaaactgttcaaacgcaa 3854352  T
Q  270 ccatgccaaatcactccaaagaaagaatgcgtaaatcgcggtaacaccgccatgtgaccaaactgaattagatacttacgaacagagtcaaagagaaatg 369  Q
     ||||||| |||||||  |||||||||||| ||||| | |||||| || ||||||||||||||||||| |||| || |||||||||||| | ||||||||    
T  3854353 gcatgccagatcactctgaagaaagaatgcttaaattgtggtaac-cccccatgtgaccaaactgaataagatgctcacgaacagagtc-aggagaaatg 3854450  T
Q  370 aat 372  Q
    |||    
T  3854451 aat 3854453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 262 - 470
Target Start/End: Original strand, 51988515 - 51988729
Alignment:
Q  262 aaacgcaaccatgccaaatcactccaaagaaagaatgcgtaaatcgcggtaacaccgccatgtgaccaaactgaattagatacttacgaacagagtcaaa 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| || || | ||||||| ||    
T  51988515 aaacgcaaccatgccaaatcactccaaagaaagaatgcgtaaatcgcggtaaccccgcaatgtgaccaaactgaattagatgctcacaagcagagtc-aa 51988613  T
Q  362 gagaaatgaatgagatatgaagccactaataaacctcgtgccatacactgtcaaatatgtcacatcagaagagaagatgacttg-------tgtacaccc 454  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||| |||||||||||       |||||||||    
T  51988614 gagaaatgaacgagatatgaagccactaataaaccccgtgccatacactgccaaatatgtcacatcggaagataagatgacttgtcatttctgtacaccc 51988713  T
Q  455 acatccacctatgcta 470  Q
    ||||||||||||||||    
T  51988714 acatccacctatgcta 51988729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 97 - 266
Target Start/End: Original strand, 32590678 - 32590847
Alignment:
Q  97 taacacccatacaaattaaagggtgtcgccatctgtcattataactgaaagctgaagttaacctattcgctcttaaccaagaaaaagattctgactttac 196  Q
    ||||||||||||||||||||||||| | ||| | |||||||||||||||||| ||||||| |||||| ||  ||||||||| ||||||  |  |||||||    
T  32590678 taacacccatacaaattaaagggtgccaccaccggtcattataactgaaagcggaagttagcctattagcctttaaccaagtaaaagacacaaactttac 32590777  T
Q  197 tttgtctaataattgaaccaagtcttgtactttgtttctaaagatcctattgattctttccttccaaacg 266  Q
     ||||| || | |||  |||||||||||| ||||| |   |||||||| ||| ||||||| |||||||||    
T  32590778 attgtcaaaaatttgttccaagtcttgtattttgtcttcgaagatcctgttgtttctttcattccaaacg 32590847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 88 - 264
Target Start/End: Complemental strand, 4694064 - 4693888
Alignment:
Q  88 actactccctaacacccatacaaattaaagggtgtcgccatctgtcattataactgaaagctgaagttaacctattcgctcttaaccaagaaaaagattc 187  Q
    |||||||| |||||| ||||||| |||||||||||||||| |  ||||||||||||||||||||||||| |||||| ||  ||| ||||||||||||  |    
T  4694064 actactccataacacacatacaagttaaagggtgtcgccaccattcattataactgaaagctgaagttagcctattagcctttagccaagaaaaagaaac 4693965  T
Q  188 tgactttactttgtctaataattgaaccaagtcttgtactttgtttctaaagatcctattgattctttccttccaaa 264  Q
      |||||||  |||||||||||||   ||| |||  | ||||| || |||| ||| | ||| |||||||||||||||    
T  4693964 aaactttacgatgtctaataattgtgtcaaatctcttgctttgcttttaaaaatcatgttgtttctttccttccaaa 4693888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 88 - 184
Target Start/End: Complemental strand, 51410988 - 51410892
Alignment:
Q  88 actactccctaacacccatacaaattaaagggtgtcgccatctgtcattataactgaaagctgaagttaacctattcgctcttaaccaagaaaaaga 184  Q
    |||||||| |||||||||||||| |||||||||  ||||| | |||||||||||||||||||||||||| |||||| ||  ||| ||||||||||||    
T  51410988 actactccataacacccatacaagttaaagggttccgccaccagtcattataactgaaagctgaagttagcctattagcctttagccaagaaaaaga 51410892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 43912953 - 43913019
Alignment:
Q  88 actactccctaacacccatacaaattaaagggtgtcgccatctgtcattataactgaaagctgaagt 154  Q
    |||||||| |||||||||||||| |||||||||| ||||| | |||| |||||||||||||||||||    
T  43912953 actactccataacacccatacaagttaaagggtgccgccaccagtcagtataactgaaagctgaagt 43913019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 89 - 152
Target Start/End: Complemental strand, 42914085 - 42914022
Alignment:
Q  89 ctactccctaacacccatacaaattaaagggtgtcgccatctgtcattataactgaaagctgaa 152  Q
    ||||||| ||||| |||||||| |||||||||| ||||| | ||||||||| ||||||||||||    
T  42914085 ctactccataacatccatacaagttaaagggtgccgccaccagtcattatagctgaaagctgaa 42914022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 3e-49; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 85 - 358
Target Start/End: Complemental strand, 33560473 - 33560193
Alignment:
Q  85 aagactactccctaacacccatacaaattaaagggtgtcgccatctgtcattataactgaaagctgaagttaacctattcgctcttaaccaagaaaaaga 184  Q
    |||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||| ||||||| | || |||||||||| |||    
T  33560473 aagactactccctaacacccatacaaattaaagggtgtcgccacaagtcattataactgaaagctgaagttagcctattcaccctcaaccaagaaataga 33560374  T
Q  185 ttctgactttactttgtctaataattgaaccaagtcttgtactttgtttctaaagatcctattgattctttcct---------tccaaacgcaaccatgc 275  Q
    | |  | |||||  |||||| |||||||||||| ||| |  ||||| || | |||||||||||| |||||||||         |||||||| |  | |||    
T  33560373 tacaaattttac--tgtctactaattgaaccaaatctagagctttgcttttgaagatcctattgtttctttccttccaaactatccaaacggatacgtgc 33560276  T
Q  276 caaatcactccaaagaaagaatgcgtaaatcgcggtaacaccgccatgtgaccaaactgaattagatacttacgaacagagtc 358  Q
    || ||||||   ||||| ||||||||| |||| |||||| |||||| |||||||||||||||||||| |||||||||||||||    
T  33560275 cagatcactttgaagaatgaatgcgtagatcgtggtaaccccgccaagtgaccaaactgaattagatgcttacgaacagagtc 33560193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 90 - 335
Target Start/End: Complemental strand, 35431451 - 35431197
Alignment:
Q  90 tactccctaacacccatacaaattaaagggtgtcgccatctgtcattataactgaaagctgaagttaacctattcgctcttaaccaagaaaaagattctg 189  Q
    |||||| ||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||| |||||| ||  ||||||||||||| ||  |      
T  35431451 tactccataacacccatacaaattaaagggtgccgccaccagtcattataactgaaagctgaagttagcctattagcatttaaccaagaaaatgacacaa 35431352  T
Q  190 actttactttgtctaataattgaaccaagtcttgtactttgtttctaaagatcctattgattctttccttccaa---------acgcaaccatgccaaat 280  Q
    | ||||| ||||| |||| |||  ||||||||| | |||||| | | |||||| | ||| || |||||||||||         |||||| ||||||||||    
T  35431351 attttacattgtcaaatagttgttccaagtcttctgctttgtcttttaagatcatgttgtttgtttccttccaaacaatccacacgcaagcatgccaaat 35431252  T
Q  281 cactccaaagaaagaatgcgtaaatcgcggtaacaccgccatgtgaccaaactga 335  Q
    ||||   ||  ||||||| ||||||||||||||| | ||||||||||||||||||    
T  35431251 cactttgaaataagaatgtgtaaatcgcggtaactctgccatgtgaccaaactga 35431197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 113 - 265
Target Start/End: Complemental strand, 23250003 - 23249851
Alignment:
Q  113 taaagggtgtcgccatctgtcattataactgaaagctgaagttaacctattcgctcttaaccaagaaaaagattctgactttactttgtctaataattga 212  Q
    ||||||||  ||||| | |||||||||||||||||| ||||||| | |||| ||| ||||||||||||||||     ||||||| ||||||||||| |||    
T  23250003 taaagggttccgccaccagtcattataactgaaagcggaagttagcatattagcttttaaccaagaaaaagacataaactttacattgtctaataagtga 23249904  T
Q  213 accaagtcttgtactttgtttctaaagatcctattgattctttccttccaaac 265  Q
    ||||| || ||  |||||||| |||| ||||| ||| ||||||||||||||||    
T  23249903 accaaatcgtgagctttgtttttaaaaatcctgttgtttctttccttccaaac 23249851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 88 - 220
Target Start/End: Original strand, 28920305 - 28920437
Alignment:
Q  88 actactccctaacacccatacaaattaaagggtgtcgccatctgtcattataactgaaagctgaagttaacctattcgctcttaaccaagaaaaagattc 187  Q
    |||||||| ||||||||||||||| ||||||||| ||||| | |||||||||||||||||| ||||||| | |||| ||  ||| ||||||||||||  |    
T  28920305 actactccataacacccatacaaagtaaagggtgccgccaccagtcattataactgaaagcggaagttagcgtattagcctttagccaagaaaaagaaac 28920404  T
Q  188 tgactttactttgtctaataattgaaccaagtc 220  Q
      |||||||  |||||||||||||||| |||||    
T  28920405 aaactttacagtgtctaataattgaacaaagtc 28920437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 98 - 265
Target Start/End: Original strand, 3250235 - 3250402
Alignment:
Q  98 aacacccatacaaattaaagggtgtcgccatctgtcattataactgaaagctgaagttaacctattcgctcttaaccaagaaaaagattctgactttact 197  Q
    |||| |||||| |||||||||||| ||||| | |||||||||||||||||||||| ||| |||||| ||   ||||||| |||| ||  |   ||||||     
T  3250235 aacaaccataccaattaaagggtgccgccaccagtcattataactgaaagctgaatttagcctattagcctgtaaccaaaaaaaggacacaagctttaca 3250334  T
Q  198 ttgtctaataattgaaccaagtcttgtactttgtttctaaagatcctattgattctttccttccaaac 265  Q
    ||||| || | |||  ||||||||| | |||||| | | |||||||| ||| ||||||||||||||||    
T  3250335 ttgtcaaaaagttgttccaagtcttatgctttgtctttgaagatcctgttgtttctttccttccaaac 3250402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 97 - 148
Target Start/End: Original strand, 24490063 - 24490114
Alignment:
Q  97 taacacccatacaaattaaagggtgtcgccatctgtcattataactgaaagc 148  Q
    ||||||||||||||| |||||| |||||||||| ||| ||||||||||||||    
T  24490063 taacacccatacaaagtaaaggatgtcgccatccgtcgttataactgaaagc 24490114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 331
Target Start/End: Original strand, 3250438 - 3250477
Alignment:
Q  292 aagaatgcgtaaatcgcggtaacaccgccatgtgaccaaa 331  Q
    ||||||| ||||||||||||||| ||||||||||||||||    
T  3250438 aagaatgagtaaatcgcggtaaccccgccatgtgaccaaa 3250477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 9e-34; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 290 - 443
Target Start/End: Complemental strand, 38432708 - 38432557
Alignment:
Q  290 gaaagaatgcgtaaatcgcggtaacaccgccatgtgaccaaactgaattagatacttacgaacagagtcaaagagaaatgaatgagatatgaagccacta 389  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||| |||| || ||||||||| ||| |  ||||||||||| | |||||||||||     
T  38432708 gaaagaatgtgtaaatcgcggtaaccccgccatgtgaccaaactgaataagatgctcacgaacagattcaga-cgaaatgaatgaaacatgaagccactg 38432610  T
Q  390 ataaacctcgtgccatacactgtcaaatatgtcacatcagaagagaagatgact 443  Q
    ||||||| |||||||||||| | |||| |||||||||| ||| |||||||||||    
T  38432609 ataaaccccgtgccatacac-gccaaagatgtcacatcggaaaagaagatgact 38432557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 89 - 154
Target Start/End: Original strand, 42266153 - 42266218
Alignment:
Q  89 ctactccctaacacccatacaaattaaagggtgtcgccatctgtcattataactgaaagctgaagt 154  Q
    ||||||||||||||||||||||| ||||||||| ||||| | ||| |||||||||||||| |||||    
T  42266153 ctactccctaacacccatacaaagtaaagggtgccgccaccggtcgttataactgaaagcggaagt 42266218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 88 - 163
Target Start/End: Original strand, 34148506 - 34148581
Alignment:
Q  88 actactccctaacacccatacaaattaaagggtgtcgccatctgtcattataactgaaagctgaagttaacctatt 163  Q
    |||||||| |||||||||||||| |||  || || | ||| | |||||||||||||||||||||||||| ||||||    
T  34148506 actactccataacacccatacaagttacgggatgcccccacccgtcattataactgaaagctgaagttagcctatt 34148581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 88 - 163
Target Start/End: Complemental strand, 34178618 - 34178543
Alignment:
Q  88 actactccctaacacccatacaaattaaagggtgtcgccatctgtcattataactgaaagctgaagttaacctatt 163  Q
    |||||||| |||||||||||||| |||  || || | ||| | |||||||||||||||||||||||||| ||||||    
T  34178618 actactccataacacccatacaagttacgggatgcccccacccgtcattataactgaaagctgaagttagcctatt 34178543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 923761 - 923717
Alignment:
Q  291 aaagaatgcgtaaatcgcggtaacaccgccatgtgaccaaactga 335  Q
    |||||||| |||||||| |||||| ||||||| ||||||||||||    
T  923761 aaagaatgtgtaaatcgtggtaaccccgccatatgaccaaactga 923717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 8e-25; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 90 - 335
Target Start/End: Complemental strand, 55109691 - 55109437
Alignment:
Q  90 tactccctaacacccatacaaattaaagggtgtcgccatctgtcattataactgaaagctgaagttaacctattcgctcttaaccaagaaaaagattctg 189  Q
    |||||| |||||||||| ||||||||||   | |||||   |||||||||||||||||| ||||||   || || ||  ||||||||||||||||  |      
T  55109691 tactccataacacccatgcaaattaaagaacgccgccactagtcattataactgaaagcagaagttttgcttttagcctttaaccaagaaaaagacacaa 55109592  T
Q  190 actttactttgtctaataattgaaccaagtcttgtactttgtttctaaagatcctattgattctttcct---------tccaaacgcaaccatgccaaat 280  Q
    |||||||||| ||  |||||||| ||||||||| || ||||| | | |||||||| ||| |||||||||         ||||||||||| ||||||| ||    
T  55109591 actttactttatcagataattgatccaagtcttctattttgtctttgaagatcctgttgtttctttcctttcaaacgatccaaacgcaagcatgccagat 55109492  T
Q  281 cactccaaagaaagaatgcgtaaatcgcggtaacaccgccatgtgaccaaactga 335  Q
    ||||   || |||||||| ||||| ||||||||| ||||||||||||||||||||    
T  55109491 cactttgaaaaaagaatgggtaaaacgcggtaaccccgccatgtgaccaaactga 55109437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 88 - 156
Target Start/End: Complemental strand, 17403808 - 17403740
Alignment:
Q  88 actactccctaacacccatacaaattaaagggtgtcgccatctgtcattataactgaaagctgaagtta 156  Q
    |||||||| |||| |||||||||  ||||||||| ||||||| ||||||||||||||||||||||||||    
T  17403808 actactccataacccccatacaagctaaagggtgccgccatcagtcattataactgaaagctgaagtta 17403740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 82 - 148
Target Start/End: Complemental strand, 19145627 - 19145561
Alignment:
Q  82 aagaagactactccctaacacccatacaaattaaagggtgtcgccatctgtcattataactgaaagc 148  Q
    ||||| ||||||||| |||||||||||| | ||||||||| ||||| | ||||||||||||||||||    
T  19145627 aagaaaactactccccaacacccatacataataaagggtgccgccaccagtcattataactgaaagc 19145561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 90 - 156
Target Start/End: Complemental strand, 39235905 - 39235839
Alignment:
Q  90 tactccctaacacccatacaaattaaagggtgtcgccatctgtcattataactgaaagctgaagtta 156  Q
    |||||| |||||||||| ||||| |||||||| || || | ||||||||||||||||||||||||||    
T  39235905 tactccataacacccatgcaaatcaaagggtgccgtcaccagtcattataactgaaagctgaagtta 39235839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 97 - 265
Target Start/End: Complemental strand, 15473140 - 15472972
Alignment:
Q  97 taacacccatacaaattaaagggtgtcgccatctgtcattataactgaaagctgaagttaacctattcgctcttaaccaagaaaaagattctgactttac 196  Q
    ||||||||||||| | ||||||||| ||| | | |||||||||||||||||| ||||| | | |||| ||| ||||||||||||||||     |||||||    
T  15473140 taacacccatacatagtaaagggtgccgcaaccagtcattataactgaaagcagaagtcagcatattagcttttaaccaagaaaaagacataaactttac 15473041  T
Q  197 tttgtctaataattgaaccaagtcttgtactttgtttctaaagatcctattgattctttccttccaaac 265  Q
     ||||||||||| |||||||| || ||  |||||||| |||| ||||| ||  ||||||||||||||||    
T  15473040 attgtctaataagtgaaccaaatcctgagctttgtttttaaaaatcctgttatttctttccttccaaac 15472972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 97 - 211
Target Start/End: Complemental strand, 18093619 - 18093505
Alignment:
Q  97 taacacccatacaaattaaagggtgtcgccatctgtcattataactgaaagctgaagttaacctattcgctcttaa-ccaagaaaaagattctgacttta 195  Q
    |||||||||||||| |||||||||| ||||| | |||||| |||||||||||||||| || |||||| || ||||| ||||||||||||  |  |||| |    
T  18093619 taacacccatacaagttaaagggtgccgccaccagtcattgtaactgaaagctgaagctagcctattagc-cttaagccaagaaaaagaaacaaacttaa 18093521  T
Q  196 ctttgtctaataattg 211  Q
    | ||||||||||||||    
T  18093520 cattgtctaataattg 18093505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 97 - 243
Target Start/End: Original strand, 15170291 - 15170437
Alignment:
Q  97 taacacccatacaaattaaagggtgtcgccatctgtcattataactgaaagctgaagttaacctattcgctcttaaccaagaaaaagattctgactttac 196  Q
    |||||| |||||| | ||||||||  ||||  | |||||||||||||||||| ||||| | | |||| ||| ||||||||||||||||     |||||||    
T  15170291 taacacacatacatagtaaagggtaccgcctccagtcattataactgaaagcggaagtcagcatattagcttttaaccaagaaaaagacataaactttac 15170390  T
Q  197 tttgtctaataattgaaccaagtcttgtactttgtttctaaagatcc 243  Q
     ||||||||||| |||||||| || ||  |||||||| |||| ||||    
T  15170391 attgtctaataagtgaaccaaatcctgagctttgtttttaaaaatcc 15170437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 97 - 243
Target Start/End: Original strand, 15179063 - 15179209
Alignment:
Q  97 taacacccatacaaattaaagggtgtcgccatctgtcattataactgaaagctgaagttaacctattcgctcttaaccaagaaaaagattctgactttac 196  Q
    |||||| |||||| | ||||||||  ||||  | |||||||||||||||||| ||||| | | |||| ||| ||||||||||||||||     |||||||    
T  15179063 taacacacatacatagtaaagggtaccgcctccagtcattataactgaaagcggaagtcagcatattagcttttaaccaagaaaaagacataaactttac 15179162  T
Q  197 tttgtctaataattgaaccaagtcttgtactttgtttctaaagatcc 243  Q
     ||||||||||| |||||||| || ||  |||||||| |||| ||||    
T  15179163 attgtctaataagtgaaccaaatcctgagctttgtttttaaaaatcc 15179209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 131 - 265
Target Start/End: Original strand, 15183901 - 15184035
Alignment:
Q  131 gtcattataactgaaagctgaagttaacctattcgctcttaaccaagaaaaagattctgactttactttgtctaataattgaaccaagtcttgtactttg 230  Q
    |||||||||||||||||| ||||| | | |||| ||| ||||||||||||||||     ||||||| ||||||||||| |||||||| || ||  |||||    
T  15183901 gtcattataactgaaagcggaagtcagcatatttgcttttaaccaagaaaaagaaataaactttacattgtctaataagtgaaccaaatcctgagctttg 15184000  T
Q  231 tttctaaagatcctattgattctttccttccaaac 265  Q
    ||| |||| || || ||  || |||||||||||||    
T  15184001 tttttaaaaattctgttatttatttccttccaaac 15184035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 98 - 217
Target Start/End: Original strand, 15160280 - 15160399
Alignment:
Q  98 aacacccatacaaattaaagggtgtcgccatctgtcattataactgaaagctgaagttaacctattcgctcttaaccaagaaaaagattctgactttact 197  Q
    |||||| ||||| | ||||| ||| ||||| | |||||||||||||||||| ||||||| | | || ||| ||||||||||||||||     |||||||     
T  15160280 aacacctatacatagtaaagagtgccgccaccagtcattataactgaaagcggaagttagcatgttagcttttaaccaagaaaaagacataaactttaca 15160379  T
Q  198 ttgtctaataattgaaccaa 217  Q
    |||| |||||| ||||||||    
T  15160380 ttgtttaataagtgaaccaa 15160399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 26585841 - 26585913
Alignment:
Q  82 aagaagactactccctaacacccatacaaattaaagggtgtcgccatctgtcattataactgaaagctgaagt 154  Q
    |||||||||||||||||| ||||||||| | |||||||   ||||| | |||||| |||| |||||| |||||    
T  26585841 aagaagactactccctaatacccatacataataaagggctccgccaccagtcattgtaaccgaaagcggaagt 26585913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1243 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold1243
Description:

Target: scaffold1243; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 131 - 265
Target Start/End: Complemental strand, 1968 - 1834
Alignment:
Q  131 gtcattataactgaaagctgaagttaacctattcgctcttaaccaagaaaaagattctgactttactttgtctaataattgaaccaagtcttgtactttg 230  Q
    |||||||||||||||| | ||||| ||| |||| ||| ||||||||||||||||     ||||||| ||||||||||| |||||||| || ||  |||||    
T  1968 gtcattataactgaaaacggaagtcaacatatttgcttttaaccaagaaaaagaaataaactttacattgtctaataagtgaaccaaatcatgagctttg 1869  T
Q  231 tttctaaagatcctattgattctttccttccaaac 265  Q
    ||| || | ||||| ||  ||||||||||||||||    
T  1868 tttttacaaatcctgttatttctttccttccaaac 1834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 88 - 184
Target Start/End: Complemental strand, 54264934 - 54264839
Alignment:
Q  88 actactccctaacacccatacaaattaaagggtgtcgccatctgtcattataactgaaagctgaagttaacctattcgctcttaaccaagaaaaaga 184  Q
    |||||||| ||||||||||||||| ||| ||||| ||||| | |||||||||| ||||||| |||||||||||||| |   ||| ||||||||||||    
T  54264934 actactccataacacccatacaaaataa-gggtgccgccacccgtcattataattgaaagcggaagttaacctattagtctttagccaagaaaaaga 54264839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 28033672 - 28033738
Alignment:
Q  88 actactccctaacacccatacaaattaaagggtgtcgccatctgtcattataactgaaagctgaagt 154  Q
    ||||||||| || ||||||||||||||| ||||  ||||||| |||||||||||||||||| |||||    
T  28033672 actactccccaatacccatacaaattaaggggtaccgccatcagtcattataactgaaagcggaagt 28033738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 88 - 184
Target Start/End: Original strand, 31887976 - 31888072
Alignment:
Q  88 actactccctaacacccatacaaattaaagggtgtcgccatctgtcattataactgaaagctgaagttaacctattcgctcttaaccaagaaaaaga 184  Q
    |||||||| |||||| |||| |||| |||||||| ||||| | |||||||||| | ||||||||||||||  |||| ||  ||| ||||||||||||    
T  31887976 actactccataacactcatataaataaaagggtgccgccaccggtcattataattaaaagctgaagttaatttattagcctttacccaagaaaaaga 31888072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 154
Target Start/End: Complemental strand, 11295080 - 11295016
Alignment:
Q  90 tactccctaacacccatacaaattaaagggtgtcgccatctgtcattataactgaaagctgaagt 154  Q
    |||||| ||||| |||||||||||||||| || ||||| |  ||| |||||||||||||||||||    
T  11295080 tactccataacatccatacaaattaaaggatgccgccaccaatcactataactgaaagctgaagt 11295016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 267 - 335
Target Start/End: Original strand, 28033860 - 28033928
Alignment:
Q  267 caaccatgccaaatcactccaaagaaagaatgcgtaaatcgcggtaacaccgccatgtgaccaaactga 335  Q
    ||| ||||||||||||||  || |||| |||| ||||||||| ||||  |||||| |||||||||||||    
T  28033860 caagcatgccaaatcactttaaggaaaaaatgtgtaaatcgcagtaatcccgccaagtgaccaaactga 28033928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 31882088 - 31882140
Alignment:
Q  90 tactccctaacacccatacaaattaaagggtgtcgccatctgtcattataact 142  Q
    |||||| |||||| |||||||||||||||||| |||||   ||||||||||||    
T  31882088 tactccataacactcatacaaattaaagggtgccgccacgagtcattataact 31882140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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