View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19381_high_14 (Length: 452)
Name: NF19381_high_14
Description: NF19381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19381_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Original strand, 3669129 - 3669563
Alignment:
| Q |
1 |
attctagttattttaacaacactagtgcttctatgtgtataagagaacatagaaaatcagaagaagatggatacaagtggagaaaatatggagagaaaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3669129 |
attctagttattttaacaacactagtgcttctatgtctataagagaacaaagaaaatcagaagaagatggatacaagtggagaaaatatggagagaaaca |
3669228 |
T |
|
| Q |
101 |
agtgaaaggaagtgaaaatccaagaagttattacaagtgcactaatccaatttgctcaatgaagaagaaagttgaaaggtctttggatgatggacaaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3669229 |
agtgaaaggaagtgaaaatccaagaagttattacaagtgcactaatccaatttgctcaatgaagaagaaagttgaaaggtctttggatgatggacaaatt |
3669328 |
T |
|
| Q |
201 |
actcaaatagtatataaaggaagtcataaccatcctaagcctcagtgt---aagagaagagcaaattctcaaaatattcatcaaccttcttcatcatgca |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3669329 |
actcaaatagtatataaaggaagtcataaccatcctaagcctcagtgtacaaagagaagagcaaattctcaatatattcatcaaccttcttcatcatgca |
3669428 |
T |
|
| Q |
298 |
acaactctatggtctctgatctttctttgggagaggatgattttgatcaaacatcacaaactagtttttctggtggagattatgatgacttgggaataga |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3669429 |
acaactctatggtctctgatctttctttgggagaggatgattttgatcaaacatcacaaactagtttttctggtggagattatgatgacttgggaataga |
3669528 |
T |
|
| Q |
398 |
ggctaaaagatggtaagatcagtacactctctggt |
432 |
Q |
| |
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||||||||||||||||||||||||||| ||||||| |
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| T |
3669529 |
ggctaaaagatggtaagatcagtacaccctctggt |
3669563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 7e-50; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 63 - 269
Target Start/End: Complemental strand, 26332622 - 26332419
Alignment:
| Q |
63 |
gaagatggatacaagtggagaaaatatggagagaaacaagtgaaaggaagtgaaaatccaagaagttattacaagtgcactaatccaatttgctcaatga |
162 |
Q |
| |
|
|||||||| ||||| ||||||||||||||| ||||||||||||||||||| |||||||| | ||||||||||||||||| ||||||| ||||||||||| |
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| T |
26332622 |
gaagatggttacaattggagaaaatatggacagaaacaagtgaaaggaagcgaaaatccgcgtagttattacaagtgcacgaatccaaattgctcaatga |
26332523 |
T |
|
| Q |
163 |
agaagaaagttgaaaggtctttggatgatggacaaattactcaaatagtatataaaggaagtcataaccatcctaagcctcagtgtaagagaagagcaaa |
262 |
Q |
| |
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|||||||||| || ||| |||| |||||||| |||||| |||| |||||||| |||| ||||||||| ||||||||||||| ||| |||||| |||| |
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| T |
26332522 |
agaagaaagtcgagagggatttg---gatggacagattactgaaattgtatataagggaactcataaccaccctaagcctcagtctaatagaagaacaaa |
26332426 |
T |
|
| Q |
263 |
ttctcaa |
269 |
Q |
| |
|
|||||| |
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|
| T |
26332425 |
ctctcaa |
26332419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 66 - 142
Target Start/End: Complemental strand, 40471514 - 40471438
Alignment:
| Q |
66 |
gatggatacaagtggagaaaatatggagagaaacaagtgaaaggaagtgaaaatccaagaagttattacaagtgcac |
142 |
Q |
| |
|
|||||||| || ||||||||||||||| |||| ||||| |||||||| || |||| ||||||||||||||||||| |
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|
| T |
40471514 |
gatggatataactggagaaaatatggacagaagcaagtaaaaggaagcgagtatcctcgaagttattacaagtgcac |
40471438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 66 - 242
Target Start/End: Complemental strand, 26967128 - 26966955
Alignment:
| Q |
66 |
gatggatacaagtggagaaaatatggagagaaacaagtgaaaggaagtgaaaatccaagaagttattacaagtgcactaatccaatttgctcaatgaaga |
165 |
Q |
| |
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||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||| || |||||| | || | ||| ||| |||| |
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| T |
26967128 |
gatggatacaattggagaaaatatggacaaaaacaagtgaaaggaagtgaaaatccaagaagttattataaatgcacttaccctaattgtccaacaaaga |
26967029 |
T |
|
| Q |
166 |
agaaagttgaaaggtctttggatgatggacaaattactcaaatagtatataaaggaagtcataaccatcctaagcct |
242 |
Q |
| |
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| |||||||| ||| ||| ||||||||||||||| | ||||| || ||||| |||||||| |||||||||||| |
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| T |
26967028 |
aaaaagttgagaggggttt---agatggacaaattactgagatagtttacaaaggtagtcataatcatcctaagcct |
26966955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 66 - 142
Target Start/End: Complemental strand, 31615428 - 31615352
Alignment:
| Q |
66 |
gatggatacaagtggagaaaatatggagagaaacaagtgaaaggaagtgaaaatccaagaagttattacaagtgcac |
142 |
Q |
| |
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||||||||||| ||| ||||||||||| | || ||||| || |||||||||||||| |||||||| ||||| ||||| |
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| T |
31615428 |
gatggatacaattggcgaaaatatggacaaaagcaagttaagggaagtgaaaatccgagaagttactacaaatgcac |
31615352 |
T |
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