View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19381_high_16 (Length: 436)
Name: NF19381_high_16
Description: NF19381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19381_high_16 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 14754624 - 14754412
Alignment:
| Q |
18 |
aaaaaccggttgaaccagctgcggttgaacatgtagaaccaccaaaggcttgaaagtttgttgatcaagatcataaatatgttgtatatgtgtaatagtt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
14754624 |
aaaaaccggttgaaccagctgcggttgaacaagtagaaccaccaaaggcttgaaagtttgttgatcaagatcacaaatatgttgtatatgtgtaatagtt |
14754525 |
T |
|
| Q |
118 |
tgcatatactaaaaaattgttacatacaaatctcttattcttttatatgtctgtaattgaatttgctttgcttagtttgatgcatgtgaaaatgtgtatg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
14754524 |
tgcatatactaaaaaattgttacatacaaatctcttattcttttatatgtctgtaattgaatttgctttgcttagtttgatgcatgtgaaaatgtgaatg |
14754425 |
T |
|
| Q |
218 |
tttatggtgaatc |
230 |
Q |
| |
|
||||||||||||| |
|
|
| T |
14754424 |
tttatggtgaatc |
14754412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 257 - 353
Target Start/End: Complemental strand, 14754385 - 14754289
Alignment:
| Q |
257 |
aatgtcaaggaattgtgactttggattggatcaaatggttcattcaatcctttatgtttgttgtttcatatattaaagttgtcaattccatctatgt |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14754385 |
aatgtcaaggaattgtgactttggattggatcaaatggttcattcaatcctttatgtttgttgtttcatatattaaagttgtcaattccatctatgt |
14754289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 400 - 435
Target Start/End: Complemental strand, 14754242 - 14754207
Alignment:
| Q |
400 |
caataagtttatatattgagcacaaactataatatt |
435 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
14754242 |
caataagtttatatattgagcacaaactataatatt |
14754207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University