View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19381_high_18 (Length: 410)
Name: NF19381_high_18
Description: NF19381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19381_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 10 - 386
Target Start/End: Complemental strand, 17981971 - 17981592
Alignment:
| Q |
10 |
aagaatatgaggtgacaaaaataattgataatatttatttacaaaggaacattatagtcaatttcttaattttagagacgggtctgggtttgattcattt |
109 |
Q |
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| T |
17981971 |
aagaatatgatgtgacaaaaataattgataatatttatttacaaaggaacattatagtcaatttcttaattttagagacgggtctgggtttgattcattt |
17981872 |
T |
|
| Q |
110 |
atctaccttccatttattagagagataaacaagtgaaagattaatgagctccattttaacaagtggattccaccgacgggtttcactaatctttcatttg |
209 |
Q |
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| T |
17981871 |
atctaccttccatttattagagagataaacaagtgaaagattaatgagccccattttaataagtggattccactgacgggtttcactaatctatcatttg |
17981772 |
T |
|
| Q |
210 |
tgcccaattctctcat-aatagagtaaattgagagtaaatagatggagcaaaccggaacccacaatgaatccctacaatttaagggattaatctaacaac |
308 |
Q |
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|||| ||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17981771 |
tgccaaattctctcataaatagactaaattgagagtaaataaatggagcaaaccggaacccacaatgaatccctacaatttaagggattaatctaacaac |
17981672 |
T |
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| Q |
309 |
cgtacaatttcaagagcg--aatgaagtttcactctaaataaaggctaatgccaatatcttgaaagcatacttcataata |
386 |
Q |
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| T |
17981671 |
tgtacaatctcaagagcgaaaatgaagtttcactctaaataaaggctaatgccaatatcttgaaaacgtacttcataata |
17981592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 10 - 319
Target Start/End: Complemental strand, 17975434 - 17975135
Alignment:
| Q |
10 |
aagaatatgaggtgacaaaaataattgataatatttatttacaaaggaacattatagtcaatttcttaattttagagac-gggtctgggtttgattcatt |
108 |
Q |
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| T |
17975434 |
aagaatatgaggtgacaaaaataattgataatatttatctacaaaggaacattatagtcaatttcttaactttagagaccgggtctgggtttgattcatt |
17975335 |
T |
|
| Q |
109 |
tatctaccttccatttattagagagataaacaagtgaaagattaatgagctccattttaacaagtggattccaccgacgggtttcactaatctttcattt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| | ||||||||||||||||||||| |
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| T |
17975334 |
tatctaccttccatttattagagagataaacaagtgaaagattaatgagccccattttaataagt------------caggtttcactaatctttcattt |
17975247 |
T |
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| Q |
209 |
gtgcccaattctctcataa-tagagtaaattgagagtaaatagatggagcaaaccggaacccacaatgaatccctacaatttaagggattaatctaacaa |
307 |
Q |
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| T |
17975246 |
gtgcccaattctctcataattagactaaattgagagtaaataaatggagcaaaccggaacccacaatgaatccctacaatttaagggattaatctaacaa |
17975147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 10 - 381
Target Start/End: Complemental strand, 17969759 - 17969379
Alignment:
| Q |
10 |
aagaatatgaggtgacaaaaataattgataatatttatttacaaaggaacattatagtcaatttcttaattttagagacgg-gtctgggtttgattcatt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||| | | | ||||||| | |||| |
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| T |
17969759 |
aagaatatgaggtgacaaaaataattgataatatttatttacaatggaacgttttagtcaatttcttaattttagagatagaggccgggtttgctccatt |
17969660 |
T |
|
| Q |
109 |
tatctaccttccatttattagagagataaaca--agtgaaagattaatgagctccattttaa--caagtggattccaccgacgggtttcactaatctttc |
204 |
Q |
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|||||||||||||||||||||||| ||||||| |||||||||||||||||| |||| ||| |||||||||||||| | |||||||||||||||||| |
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| T |
17969659 |
tatctaccttccatttattagagacataaacacaagtgaaagattaatgagcctcattctaaaacaagtggattccactaatgggtttcactaatctttc |
17969560 |
T |
|
| Q |
205 |
atttgtgcccaattctctcataa-tagagtaaattgagagtaaatagatggagcaaaccggaacccacaatgaatccctacaatttaagggattaatcta |
303 |
Q |
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||||||| |||| |||||| ||| ||| |||||||||||||||| |||||||||||| ||||||||||||| |||||||||||| ||||||||||||| |
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| T |
17969559 |
atttgtgtccaaatctctcgtaaatagcaaaaattgagagtaaataaatggagcaaaccagaacccacaatgagtccctacaatttcagggattaatcta |
17969460 |
T |
|
| Q |
304 |
acaac--cgtacaatttcaagagcg--aatgaagtttcactctaaataaaggctaatgccaatatcttgaaagcatacttca |
381 |
Q |
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||||| |||||| |||||||| | ||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||| |
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| T |
17969459 |
acaacggtgtacaaattcaagagtgaaaatgaagtttcactctaaataaaggctaatg-caatatcttaaaagcctacttca |
17969379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 120 - 392
Target Start/End: Complemental strand, 17986906 - 17986623
Alignment:
| Q |
120 |
catttattagagagataaaca--agtgaaagattaatgagctccattttaacaagtggattccaccgacgggtttcactaatctttcatttgtgcccaat |
217 |
Q |
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||||||||||||| ||||||| |||||||||| |||| || ||||||||| ||||||||||||| | ||||||||||||||| |||||||| ||||| |
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| T |
17986906 |
catttattagagacataaacacaagtgaaagatcaatgtgccccattttaataagtggattccactaataggtttcactaatcttccatttgtgtccaat |
17986807 |
T |
|
| Q |
218 |
tctctcata--------atagagtaaattgagagtaaatagatggagcaaaccggaacccacaatgaatccctacaatttaagggattaatctaaca--a |
307 |
Q |
| |
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||||||||| | |||| |||||||||||||||| ||||||||||||| |||| ||| || | |||| |||| | ||||||||| |||| |
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| T |
17986806 |
tctctcataaatatatgagagaggaaattgagagtaaataaatggagcaaaccgaaacctgcaacgagtgcctatgatttcaaggattaatcgaacattt |
17986707 |
T |
|
| Q |
308 |
ccgtacaatttcaagagcg--aatgaagtttcactctaaataaaggctaatgccaatatcttgaaagcatacttcataatattgttc |
392 |
Q |
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||| ||| ||||||||| |||||||||| ||||||||||||||||||| |||||||||||||| ||||||| ||| |||||| |
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| T |
17986706 |
gggtaaaatatcaagagcgaaaatgaagtttgactctaaataaaggctaat---aatatcttgaaagcctacttcaaaattttgttc |
17986623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 17987042 - 17986959
Alignment:
| Q |
10 |
aagaatatgaggtgacaaaaataattgataatat------ttatttacaaaggaacattatagtcaatttcttaattttagaga |
87 |
Q |
| |
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|||||||||| ||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
17987042 |
aagaatatgacgtgacaaaaataattgataatatttatatttattcacaaaggaacatttaagtcaatttcttaattttagaga |
17986959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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