View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19381_high_21 (Length: 361)
Name: NF19381_high_21
Description: NF19381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19381_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 151; Significance: 8e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 8 - 201
Target Start/End: Original strand, 26305475 - 26305675
Alignment:
| Q |
8 |
aagcaaaggattcaggtaggtctcttcctctcacttcaccaagccatcttttaatatcttttcaagaaataaaaaagaaagtgtcattttagactcataa |
107 |
Q |
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| T |
26305475 |
aagcaaaggattcaggtaggtctcttcctctcacttcaccaagccatcttttaatatcttttcaagaaataaaaaagaaagtgtcattttagagtcacaa |
26305574 |
T |
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| Q |
108 |
atcattgtcaca-------aattaataattaataatcatgaaacatttatgaataacaatgttgtcaattgcagattgtagacactaggagtttgttcaa |
200 |
Q |
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| T |
26305575 |
atcattgtcacaaattaataattaataattaataatgatgaaacatttatgaataacaatgttgtcaattgcagatcatagacagtaggagtttgttcaa |
26305674 |
T |
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| Q |
201 |
c |
201 |
Q |
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| |
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| T |
26305675 |
c |
26305675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 198 - 361
Target Start/End: Original strand, 26305700 - 26305851
Alignment:
| Q |
198 |
caacaccgtgtactaaattgtgtattgctgaacgataacaatttgttaaaattctacgacactatatcttctattcgataacgttgtgagtgacattatg |
297 |
Q |
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|||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| || |
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| T |
26305700 |
caacactgtgtactaaattgtgtatcgccgaacgataacaatttgttaaaattctacgacactatctcttctattcgata------------acattgtg |
26305787 |
T |
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| Q |
298 |
agaagcagaaaaaacaagacgtactaatgtcagagccagaacagacagaagaatcaattgtgac |
361 |
Q |
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| T |
26305788 |
agaagcagaaaaaacaagatgtactaatgtcagagccagaacagacaaaagaagcaattgtgac |
26305851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 781240 - 781293
Alignment:
| Q |
8 |
aagcaaaggattcaggtaggtctcttcctctcacttcaccaagccatcttttaa |
61 |
Q |
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|||||||||||||||| | |||| ||||| ||| ||||||||||||||| |||| |
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| T |
781240 |
aagcaaaggattcaggcaagtcttttcctttcaattcaccaagccatctcttaa |
781293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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