View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19381_high_22 (Length: 319)
Name: NF19381_high_22
Description: NF19381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19381_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 88 - 305
Target Start/End: Original strand, 156989 - 157204
Alignment:
| Q |
88 |
gtggagttgcaaaaattagagacatttaaagatatcgacgaagacgccttgacattgtaaactttcacaagctattgaattgcatcccatccaacatgct |
187 |
Q |
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| T |
156989 |
gtggagttgcaaaaattagagacatttaaagatatcgatgaagacgccttgacattgtaaactttcacaagctattgaattgcatcccatccaacatgat |
157088 |
T |
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| Q |
188 |
gcacttatattctcacatttgaaggaactctttgtgattgaatgtgagtgcttagaagagatatttaaatcaaccgatcgcatgttgcagtgggagctat |
287 |
Q |
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| T |
157089 |
gcacttat--tctcacatttgaaggaactatttgtgattgaatgtgagtgcttagaagagatatttaaatcaaccgatcgcatgttgcagtgggagctat |
157186 |
T |
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| Q |
288 |
tgttcttaaaattgtttt |
305 |
Q |
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| T |
157187 |
tgttcttaaaattgtttt |
157204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 134 - 301
Target Start/End: Original strand, 134521 - 134686
Alignment:
| Q |
134 |
ccttgacattgtaaactttcacaagctattgaattgcatcccatccaacatgctgcacttatattctcacatttgaaggaactctttgtgattgaatgtg |
233 |
Q |
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| T |
134521 |
ccttgacattgtaaactgtcacaagctattgaattgcatcccatccaacatgatgcacttat--tatcacatttggagaaactctctgttaatgaatgtg |
134618 |
T |
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| Q |
234 |
agtgcttagaagagatatttaaatcaaccgatcgcatgttgcagtgggagctattgttcttaaaattg |
301 |
Q |
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| T |
134619 |
agtacttagaagagatatttgaatcaactgatagcatgttgcagtgggagctagtgttcttaaaattg |
134686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 54 - 131
Target Start/End: Original strand, 134403 - 134490
Alignment:
| Q |
54 |
ttttaaatttggattacatcaagtttatgttgtt----------gtggagttgcaaaaattagagacatttaaagatatcgacgaaga |
131 |
Q |
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| T |
134403 |
ttttaaatttggattacatcaagtttatgttgtgtgctgtgcaggtggagttgcaaaaattagagacgtttaaagatatggacgaaga |
134490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 135 - 279
Target Start/End: Original strand, 34377026 - 34377168
Alignment:
| Q |
135 |
cttgacattgtaaactttcacaagctattgaattgcatcccatccaacatgctgcacttatattctcacatttgaaggaactctttgtgattgaatgtga |
234 |
Q |
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| T |
34377026 |
cttgagattgtaaactgtcataagctattgaattgcatcccatccaacatgatgcaat--tattctcacatgtgaagtctctaacagtgaaagaatgtga |
34377123 |
T |
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| Q |
235 |
gtgcttagaagagatatttaaatcaaccgatcgcatgttgcagtg |
279 |
Q |
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| T |
34377124 |
gtgcttagtagagatatttgaatcaaatgatagcatcttgcagtg |
34377168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 135 - 279
Target Start/End: Complemental strand, 34550360 - 34550218
Alignment:
| Q |
135 |
cttgacattgtaaactttcacaagctattgaattgcatcccatccaacatgctgcacttatattctcacatttgaaggaactctttgtgattgaatgtga |
234 |
Q |
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| T |
34550360 |
cttgacattgtaaagtttaacaagctattgaattgcattccatccaacatgatgcaat--tattctcacatgtgaagtctctaacagtgaaagaatgtga |
34550263 |
T |
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| Q |
235 |
gtgcttagaagagatatttaaatcaaccgatcgcatgttgcagtg |
279 |
Q |
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| T |
34550262 |
gtgcttagtagagatatttgaatcaaatgatagcatcttgcagtg |
34550218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 131
Target Start/End: Original strand, 34376904 - 34376994
Alignment:
| Q |
48 |
aattaattttaaatttggattacatcaagtttatgt-tgttgtg------gagttgcaaaaattagagacatttaaagatatcgacgaaga |
131 |
Q |
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| T |
34376904 |
aattaattttaaatttagactacatcagttttatgtgtgttgtgcaggcggagttgcaaaaattagagacatttagagatatggatgaaga |
34376994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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