View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19381_high_38 (Length: 236)
Name: NF19381_high_38
Description: NF19381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19381_high_38 |
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Alignment Details
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 11 - 213
Target Start/End: Complemental strand, 4676905 - 4676703
Alignment:
| Q |
11 |
atcatcactaatttgcattcttggttgtttaggagaacaaactgtatcaaaattctaagaatcnnnnnnnnnnnnnnnnnnnnnngaagtatacaaatac |
110 |
Q |
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| T |
4676905 |
atcatcactaatttgcattcttggttgtttaggagaacaaactgtatcaaaattctaagaatcaaaaactgaaaaaagaaaaaaagaagtatacaaatac |
4676806 |
T |
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| Q |
111 |
aatagaatcatttgcatagtaatataccatcatcttcactctcagtttcagtatcaacttcatcttcactaaaatcattcaccttaggcttaatattaag |
210 |
Q |
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| T |
4676805 |
aatagaatcatttgcatagtaatataccatcatcttcactctcagtttcagtatcaacttcatcttcactaaaatcattcaccttaggcttaatattaag |
4676706 |
T |
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| Q |
211 |
cca |
213 |
Q |
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| T |
4676705 |
cca |
4676703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 134 - 213
Target Start/End: Original strand, 40779697 - 40779776
Alignment:
| Q |
134 |
ataccatcatcttcactctcagtttcagtatcaacttcatcttcactaaaatcattcaccttaggcttaatattaagcca |
213 |
Q |
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| T |
40779697 |
ataccatcatcttcactctcagtttcagtgtcagcttcatcttcactaaaatcataaaccttttgctttatattcagcca |
40779776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 195
Target Start/End: Original strand, 40772541 - 40772605
Alignment:
| Q |
134 |
ataccatcatcttcactctca---gtttcagtatcaacttcatcttcactaaaatcattcacctt |
195 |
Q |
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| T |
40772541 |
ataccatcatcttcactttcatcagtttcagtgttagcttcatcttcactaaaatcatacacctt |
40772605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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