View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19381_high_40 (Length: 229)
Name: NF19381_high_40
Description: NF19381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19381_high_40 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 20 - 212
Target Start/End: Complemental strand, 7481680 - 7481488
Alignment:
| Q |
20 |
tttccagccatagttgaacttcatggttgttggctccctgctgctcctctgcatccaaaaccacagccttgatctcagacatattatccaccagcttgtc |
119 |
Q |
| |
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|||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
7481680 |
tttccagccagagttgaacttgatggttgttggttccctgctgctcctctgcatccaaaaccacagccttgatctcagacatattctccaccagcttgtc |
7481581 |
T |
|
| Q |
120 |
aagatcatctctcatgttccagcattcaacaaccacagaacccagcttcccgatcagcttttcaatcatgttgaacaaaagaccttcagccat |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7481580 |
aagatcatctctcatgttccagcattcaacaaccacagaacccagcttcccgatcagcttttcaatcatgttgaacaaaagaccttcagccat |
7481488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 20 - 212
Target Start/End: Original strand, 7129458 - 7129650
Alignment:
| Q |
20 |
tttccagccatagttgaacttcatggttgttggctccctgctgctcctctgcatccaaaaccacagccttgatctcagacatattatccaccagcttgtc |
119 |
Q |
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|||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
7129458 |
tttccaaccagagttgaacttgatggttgttggctccctgctgctcctctgcatccaaaaccacagccttgatctcagacatattttccaccagcttttg |
7129557 |
T |
|
| Q |
120 |
aagatcatctctcatgttccagcattcaacaaccacagaacccagcttcccgatcagcttttcaatcatgttgaacaaaagaccttcagccat |
212 |
Q |
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||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
7129558 |
aagatcatctctcatgttccagctttcaacaaccactgaacccagcttcccgatcagcttgtcaatcatgttgaacaaaagaccttcagccat |
7129650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 20 - 212
Target Start/End: Complemental strand, 7527799 - 7527607
Alignment:
| Q |
20 |
tttccagccatagttgaacttcatggttgttggctccctgctgctcctctgcatccaaaaccacagccttgatctcagacatattatccaccagcttgtc |
119 |
Q |
| |
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||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
7527799 |
tttccagccatagttgaacttgatggttgttggtgccctgctgctcttctgcatccaaaaccacagccttgatctcagacatattctccaccagcttgtc |
7527700 |
T |
|
| Q |
120 |
aagatcatctctcatgttccagcattcaacaaccacagaacccagcttcccgatcagcttttcaatcatgttgaacaaaagaccttcagccat |
212 |
Q |
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|||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||| |||||||||||||||| || |||||||||||| |
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| T |
7527699 |
aagatcatctctcatgttccagcattgaacaaccactgaacctagcttcccgatcagcttctcaatcatgttgaacagaataccttcagccat |
7527607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 20 - 212
Target Start/End: Complemental strand, 7494082 - 7493890
Alignment:
| Q |
20 |
tttccagccatagttgaacttcatggttgttggctccctgctgctcctctgcatccaaaaccacagccttgatctcagacatattatccaccagcttgtc |
119 |
Q |
| |
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|||||| ||| |||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
7494082 |
tttccaaccacagttgaacttgatggttgttggttccttgctgctcctctgcatccaaaaccacagccttgatctcagacatattctccaccagcttttg |
7493983 |
T |
|
| Q |
120 |
aagatcatctctcatgttccagcattcaacaaccacagaacccagcttcccgatcagcttttcaatcatgttgaacaaaagaccttcagccat |
212 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||| |||| ||| ||||||||||| |
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| T |
7493982 |
aagatcatctctcatgttccagccttcaacaaccatagaacccagcttcccgatcagcttatcaatcatgttaaacagaagtccttcagccat |
7493890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 20 - 212
Target Start/End: Complemental strand, 7519749 - 7519557
Alignment:
| Q |
20 |
tttccagccatagttgaacttcatggttgttggctccctgctgctcctctgcatccaaaaccacagccttgatctcagacatattatccaccagcttgtc |
119 |
Q |
| |
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|||||| ||| |||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
7519749 |
tttccaaccacagttgaacttgatggttgttggttccttgctgctcctctgcatccaaaaccacagccttgatctcagacatattctccaccagcttttg |
7519650 |
T |
|
| Q |
120 |
aagatcatctctcatgttccagcattcaacaaccacagaacccagcttcccgatcagcttttcaatcatgttgaacaaaagaccttcagccat |
212 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||| |||| ||| ||||||||||| |
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| T |
7519649 |
aagatcatctctcatgttccagccttcaacaaccatagaacccagcttcccgatcagcttatcaatcatgttaaacagaagtccttcagccat |
7519557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 20 - 212
Target Start/End: Original strand, 7714445 - 7714630
Alignment:
| Q |
20 |
tttccagccatagttgaacttcatggttgttggctccctgctgctcctctgcatccaaaaccacagccttgatctcagacatattatccaccagcttgtc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||| |||||| |
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| T |
7714445 |
tttccagccatagttgaacttcatggttgttggctccctgctgct-------atccaaaatcacagccttgatctcatacatattatccaccatcttgtc |
7714537 |
T |
|
| Q |
120 |
aagatcatctctcatgttccagcattcaacaaccacagaacccagcttcccgatcagcttttcaatcatgttgaacaaaagaccttcagccat |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
7714538 |
aagatcatctctcatgttccagcattcaacacccattgaacccagcctcccgatcagcttctcaatcatgttgaacaaaagactttcagccat |
7714630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 20 - 212
Target Start/End: Original strand, 7722732 - 7722924
Alignment:
| Q |
20 |
tttccagccatagttgaacttcatggttgttggctccctgctgctcctctgcatccaaaaccacagccttgatctcagacatattatccaccagcttgtc |
119 |
Q |
| |
|
|||| ||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
7722732 |
tttcaagccagagttgaacttgatggttgttggttccctgctgctcctctgcatccaaaaccacagccttgatctcagacatattctccaccagcttttg |
7722831 |
T |
|
| Q |
120 |
aagatcatctctcatgttccagcattcaacaaccacagaacccagcttcccgatcagcttttcaatcatgttgaacaaaagaccttcagccat |
212 |
Q |
| |
|
||||||||||||||||||||| | |||||||||| || |||||||||||||||||||| ||||||||||| |||| ||| ||||||||||| |
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| T |
7722832 |
aagatcatctctcatgttccacccttcaacaaccgtggagcccagcttcccgatcagcttatcaatcatgttaaacagaagtccttcagccat |
7722924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 58 - 212
Target Start/End: Complemental strand, 7506352 - 7506198
Alignment:
| Q |
58 |
tgctgctcctctgcatccaaaaccacagccttgatctcagacatattatccaccagcttgtcaagatcatctctcatgttccagcattcaacaaccacag |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||| ||||||||||| || |
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| T |
7506352 |
tgctgctcctctgcatccaaaaccacagccttgatctcagacatattatccaccagctagtcaagatcttctcacatgttccagccttcaacaaccatag |
7506253 |
T |
|
| Q |
158 |
aacccagcttcccgatcagcttttcaatcatgttgaacaaaagaccttcagccat |
212 |
Q |
| |
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|||||||||||||||||||||||| ||||||||| |||| ||||||||||||||| |
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|
| T |
7506252 |
aacccagcttcccgatcagcttttgaatcatgttaaacagaagaccttcagccat |
7506198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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