View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19381_high_42 (Length: 217)
Name: NF19381_high_42
Description: NF19381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19381_high_42 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 36675904 - 36675713
Alignment:
| Q |
17 |
agaagtgacaatggtggaaaaccatgcaaatcttaaaataagatcaagaaagaggccaaagcagctcttgaaaattgtatctggtttgcaaaacatgcgt |
116 |
Q |
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| T |
36675904 |
agaagtgacaatggtggaaaaccatgcaaatcttaaaataagatcaagaaagaggccaaagcagctcttgaaaattgtatctggtttgcaaaacatgcgt |
36675805 |
T |
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| Q |
117 |
ctcacaatcttgcatttaaatgttactactactggtgaaattgttctttactctctcagtgttaaggtttgtgtttgttatttcttctcact |
208 |
Q |
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| T |
36675804 |
ctcacaatcttgcatttaaatgttactactattggtgaaattgttctttactctctcagtgttaaggtttgtgtttgttatttcttttcact |
36675713 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 46922284 - 46922450
Alignment:
| Q |
18 |
gaagtgacaatggtggaaaaccatgcaaatcttaaaataagatcaagaaagaggccaaagcagctcttgaaaattgtatctggtttgcaaaacatgcgtc |
117 |
Q |
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||||| |||||||| |||| |||||||||||| ||||||||| ||| || || ||||| ||||||||||| || || ||| ||||||| || ||| |
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| T |
46922284 |
gaagttacaatggttgaaagccatgcaaatctcaaaataagaacaaagaaaagaccaaaacagctcttgaagatggtttctagtttgcatggattgtgtc |
46922383 |
T |
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| Q |
118 |
tcacaatcttgcatttaaatgttactactactggtgaaattgttctttactctctcagtgttaaggt |
184 |
Q |
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| T |
46922384 |
tcacaatcttgcaccttaatgtcactacagctgatgaatttgtcttctattctctcagcgttaaggt |
46922450 |
T |
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