View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19381_high_6 (Length: 557)
Name: NF19381_high_6
Description: NF19381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19381_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 443; Significance: 0; HSPs: 19)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 11 - 504
Target Start/End: Complemental strand, 4019711 - 4019217
Alignment:
| Q |
11 |
aagaatataaaagcctttgttgatgatgagcttaagaggggagatgaaataccacaatcacttggcagaggaattgaaggatcactaatttccttgatca |
110 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4019711 |
aagaaaataaaagcctttgttgatgatgagcttaagaggggagatgaaatactacaatcacttgtcagaggaattgaaggatcattaatttccttgatca |
4019612 |
T |
|
| Q |
111 |
tattctcacaagactatgcttcttcacgctggtgtttggaagaacttgtcacaatacttcaatgcagagagaaatatggacagattgttgtacctatttt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4019611 |
tattctcacaagactatgcttcttcacgctggtgtttggaagaacttgtcacaatacttcaatgcagagagaaatatggacaaattgttgtacctatttt |
4019512 |
T |
|
| Q |
211 |
ttatgagatagatcctgcagatggaagatatcaaatgaagagttatgaaaatgcatttgttgaacatcaaagagtgtatagctccaccaaggtgcaaatt |
310 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4019511 |
ttatgggatagatcctgcagatgtaagatatcaaatgaagagttatgaaaatgcatttgttgaacatcaaagagtgtatagctccaccaaggtgcaaatt |
4019412 |
T |
|
| Q |
311 |
tggagacatgctttgaacaaatctgctaattcatctggaattaagtcatcagattttcggtaagttttatatatt-ttttacgtcataatttttagacta |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4019411 |
tggagacatgctttgaacaaatctgctaatttatctggaattaagtcatcagattttcggtaagttttatatatttttttacgtcataatttttagacta |
4019312 |
T |
|
| Q |
410 |
tctggcctccattatttttaaaataaatatatgcaaattatcaccaactgaatggtttcacttgaaagtgaaacttttaagttgttattattcaa |
504 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
4019311 |
tctggcctccattatttttaagataaatatatgcaaattatcaccaactgaatggtttcacttgaaagtaaagcttttaagttgttattattcaa |
4019217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 11 - 445
Target Start/End: Original strand, 3962364 - 3962795
Alignment:
| Q |
11 |
aagaatataaaagcctttgttgatgatgagcttaagaggggagatgaaataccacaatcacttggcagaggaattgaaggatcactaatttccttgatca |
110 |
Q |
| |
|
||||| |||||||||||||| |||||| | |||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||| |
|
|
| T |
3962364 |
aagaaaataaaagcctttgtagatgataaacttaagaggggagatgaaataccacaatcacttgtcagagcaattgaaggatcgttaatttccttgatca |
3962463 |
T |
|
| Q |
111 |
tattctcacaagactatgcttcttcacgctggtgtttggaagaacttgtcacaatacttcaatgcagagagaaatatggacagattgttgtacctatttt |
210 |
Q |
| |
|
|||| ||||| ||||||||||||||| | |||||||| ||||||||||| |||| |||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
3962464 |
tattttcacacgactatgcttcttcatgttggtgtttagaagaacttgttacaacacttcaatgcagagagaaatatggacagatcgttatacctatttt |
3962563 |
T |
|
| Q |
211 |
ttatgagatagatcctgcagatggaagatatcaaatgaagagttatgaaaatgcatttgttgaacatcaaagagtgtatagctccaccaaggtgcaaatt |
310 |
Q |
| |
|
|||| || |||||||| |||||| ||||||||||| ||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
3962564 |
ttatcaggtagatcctacagatgtaagatatcaaaacaagagttatgataatgcatttgttgaactccaaagagggtatagctccaccaaggtgcaaatt |
3962663 |
T |
|
| Q |
311 |
tggagacatgctttgaacaaatctgctaattcatctggaattaagtcatcagattttcggtaagttttatatattttttacgtcataa-tttttagacta |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||| |||||| ||||||||||| |
|
|
| T |
3962664 |
tggagacatgctttgaacaaatctgctaatttatctggaattaagtcatcagattttcggtaagttt----ttttttttacctcataattttttagacta |
3962759 |
T |
|
| Q |
410 |
tctggcctccattatttttaaaataaatatatgcaa |
445 |
Q |
| |
|
| ||||||||||||||||||| |||||| ||||||| |
|
|
| T |
3962760 |
tttggcctccattatttttaagataaatttatgcaa |
3962795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 367
Target Start/End: Complemental strand, 3805970 - 3805630
Alignment:
| Q |
18 |
taaaagcctttgttgatgatgagcttaagaggggagatgaaataccacaatcacttggcagaggaattgaaggatcactaatttccttgatcatattctc |
117 |
Q |
| |
|
||||| |||| || |||||||| ||||| |||||||||||||||||||||||||||| || |||||| | ||| ||||||||||||| | || |
|
|
| T |
3805970 |
taaaacccttcgtagatgatgaacttaaaaggggagatgaaataccacaatcacttgtca---------aaggattattaacttccttgatcataat-tc |
3805881 |
T |
|
| Q |
118 |
acaagactatgcttcttcacgctggtgtttggaagaacttgtcacaatacttcaatgcagagagaaatatggacagattgttgtacctattttttatgag |
217 |
Q |
| |
|
| ||| ||||||||||||| | ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
3805880 |
agaaggctatgcttcttcatgttggtgtttggacgaacttgtcacaatacttcaatgcagaaagaaatatggacagattgttatacctattttttatggg |
3805781 |
T |
|
| Q |
218 |
atagatcctgcagatggaagatatcaaatgaagagttatgaaaatgcatttgttgaacatcaa-agagtgtatagctccaccaaggtgcaaatttggaga |
316 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| | ||| || |||||| ||||| ||||||| ||||||||||| |
|
|
| T |
3805780 |
atagatcctgcagatgtaagatatcaaatgaagggttatgaaaatgcatttgttgaataccaagggaatgtataactccatcaaggtgaaaatttggaga |
3805681 |
T |
|
| Q |
317 |
catgctttgaacaaatctgctaattcatctggaattaagtcatcagatttt |
367 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3805680 |
catgctttcaacaaatctgctaatttatctggaattaagtcatcagatttt |
3805630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 3825948 - 3825751
Alignment:
| Q |
17 |
ataaaagcctttgttgatgatgagcttaagaggggagatgaaataccacaatcacttggcagaggaattgaaggatcactaatttccttgatcatattct |
116 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
3825948 |
ataaaagcctttgttgatgatgaacttaagaggggagatgaaataccacaatcacttgtaagaggaaatgaaggatcattaatttccttgatcatattct |
3825849 |
T |
|
| Q |
117 |
cacaagactatgcttcttcacgctggtgtttggaagaacttgtcacaatacttcaatgcagagagaaatatggacagattgttgtacctattttttat |
214 |
Q |
| |
|
|||||||||||||||||||| | |||||||| ||||||| ||||||||||| |||||||||||||||||||||||| |||||| ||||| |||||||| |
|
|
| T |
3825848 |
cacaagactatgcttcttcatgttggtgtttagaagaacatgtcacaatacgtcaatgcagagagaaatatggacaaattgttatacctgttttttat |
3825751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 212 - 389
Target Start/End: Complemental strand, 3948350 - 3948173
Alignment:
| Q |
212 |
tatgagatagatcctgcagatggaagatatcaaatgaagagttatgaaaatgcatttgttgaacatcaaagagtgtatagctccaccaaggtgcaaattt |
311 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| | |||||| |||||||||||||||||||||| |||| |
|
|
| T |
3948350 |
tatgaggtagatcctgcagatgtaagatatcaaatgaagggttatgaaaatgcatttgttgaataccaaagaatgtatagctccaccaaggtgcatattt |
3948251 |
T |
|
| Q |
312 |
ggagacatgctttgaacaaatctgctaattcatctggaattaagtcatcagattttcggtaagttttatatatttttt |
389 |
Q |
| |
|
||||||||||||| || ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3948250 |
ggagacatgctttcaaaaaatctgctaatttatctggaattaagtcatcggattttcggtaagttttatatatttttt |
3948173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 17 - 376
Target Start/End: Complemental strand, 4011908 - 4011549
Alignment:
| Q |
17 |
ataaaagcctttgttgatgatgagcttaagaggggagatgaaataccacaatcacttggcagaggaattgaaggatcactaatttccttgatcatattct |
116 |
Q |
| |
|
||||| |||||||||||||| | ||||||||||||||||| || |||| ||||||| || |||||||||||| | ||||| ||| ||||||||| |
|
|
| T |
4011908 |
ataaatgcctttgttgatgagaaacttaagaggggagatgacatgtcacattcacttgttgaagcaattgaaggatctcccatttcattggtcatattct |
4011809 |
T |
|
| Q |
117 |
cacaagactatgcttcttcacgctggtgtttggaagaacttgtcacaatacttcaatgcagagagaaatatggacagattgttgtacctattttttatga |
216 |
Q |
| |
|
|| || ||||||||| ||||| |||||||| |||||||||| | |||| || | |||| ||||||||||||||||||||| ||||| |||| |||| |
|
|
| T |
4011808 |
cataaaactatgcttgttcacattggtgtttagaagaacttgcgaaaataattgagtgcaaagagaaatatggacagattgtaatacctgttttctatgg |
4011709 |
T |
|
| Q |
217 |
gatagatcctgcagatggaagatatcaaatgaagagttatgaaaatgcatttgttgaacatcaaagagtgtatagctccaccaaggtgcaaatttggaga |
316 |
Q |
| |
|
| |||||||| || ||| | || |||||| ||||||||||||||||||||||| ||||| | ||| | || || || |||||||||| || |||||| |
|
|
| T |
4011708 |
ggtagatcctacaaatgtacgacatcaaaagaagagttatgaaaatgcatttgctgaacttgaaaaaaggtgtaattcgtccaaggtgcagatatggaga |
4011609 |
T |
|
| Q |
317 |
catgctttgaacaaatctgctaattcatctggaattaagtcatcagattttcggtaagtt |
376 |
Q |
| |
|
||||||||||||| ||||||||||| || |||||||||||||| |||||||||| |||| |
|
|
| T |
4011608 |
catgctttgaacacatctgctaatttgtcaggaattaagtcatctgattttcggttagtt |
4011549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 17 - 136
Target Start/End: Complemental strand, 3792795 - 3792676
Alignment:
| Q |
17 |
ataaaagcctttgttgatgatgagcttaagaggggagatgaaataccacaatcacttggcagaggaattgaaggatcactaatttccttgatcatattct |
116 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
3792795 |
ataaaagcctttgttgatgatgaacttaagaggggagatgaaataccacaatcacttgtaagaggaaatgaaggatcattaatttccttgatcatattct |
3792696 |
T |
|
| Q |
117 |
cacaagactatgcttcttca |
136 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
3792695 |
cacaagactatgcttcttca |
3792676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 17 - 376
Target Start/End: Complemental strand, 4003429 - 4003070
Alignment:
| Q |
17 |
ataaaagcctttgttgatgatgagcttaagaggggagatgaaataccacaatcacttggcagaggaattgaaggatcactaatttccttgatcatattct |
116 |
Q |
| |
|
||||| ||||||||||| || | ||||||||||||||||| ||| |||| |||||| || ||||||||||||| | ||||| ||| ||||||||| |
|
|
| T |
4003429 |
ataaatgcctttgttgacgaaaaacttaagaggggagatgatatatcacatgcacttgtagaagcaattgaaggatcattcatttcattggtcatattct |
4003330 |
T |
|
| Q |
117 |
cacaagactatgcttcttcacgctggtgtttggaagaacttgtcacaatacttcaatgcagagagaaatatggacagattgttgtacctattttttatga |
216 |
Q |
| |
|
|| || ||||||||||||||| |||||||| ||||||||||| | |||| || | |||| |||||||||||||| ||||||| ||||| |||| |||| |
|
|
| T |
4003329 |
cagaaaactatgcttcttcacattggtgtttagaagaacttgtgaaaataattgagtgcaaagagaaatatggacggattgttttacctgttttctatgg |
4003230 |
T |
|
| Q |
217 |
gatagatcctgcagatggaagatatcaaatgaagagttatgaaaatgcatttgttgaacatcaaagagtgtatagctccaccaaggtgcaaatttggaga |
316 |
Q |
| |
|
| |||||||| || ||| |||| |||||| |||||||||| ||| ||| ||| ||||| | ||| | ||| | |||||||||| | |||||| |
|
|
| T |
4003229 |
ggtagatcctacaaatgtaagacatcaaaagaagagttataaaagtgcgttttctgaacttgaaaaaagatatcatttgtccaaggtgcagaactggaga |
4003130 |
T |
|
| Q |
317 |
catgctttgaacaaatctgctaattcatctggaattaagtcatcagattttcggtaagtt |
376 |
Q |
| |
|
|| |||||||||||||||||||||| |||||||||||||||| ||||||||||| |||| |
|
|
| T |
4003129 |
cacgctttgaacaaatctgctaatttgtctggaattaagtcattagattttcggttagtt |
4003070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 17 - 376
Target Start/End: Complemental strand, 4026665 - 4026306
Alignment:
| Q |
17 |
ataaaagcctttgttgatgatgagcttaagaggggagatgaaataccacaatcacttggcagaggaattgaaggatcactaatttccttgatcatattct |
116 |
Q |
| |
|
||||| |||||||||||||| | ||||||||||||||||| ||| | | ||||||| || ||| ||||||||| | ||||| ||||||||||||| |
|
|
| T |
4026665 |
ataaatgcctttgttgatgacaaacttaagaggggagatgacatatcgaattcacttgtagaagcaatagaaggatcattcatttcattgatcatattct |
4026566 |
T |
|
| Q |
117 |
cacaagactatgcttcttcacgctggtgtttggaagaacttgtcacaatacttcaatgcagagagaaatatggacagattgttgtacctattttttatga |
216 |
Q |
| |
|
|| || |||||||||||||| | |||||||| ||||||||| | | |||| || | |||| ||||||||||||||||||||| ||||| |||| |||| |
|
|
| T |
4026565 |
cagaaaactatgcttcttcaagttggtgtttagaagaacttttgaaaataattgattgcaaagagaaatatggacagattgtaatacctgttttctatgg |
4026466 |
T |
|
| Q |
217 |
gatagatcctgcagatggaagatatcaaatgaagagttatgaaaatgcatttgttgaacatcaaagagtgtatagctccaccaaggtgcaaatttggaga |
316 |
Q |
| |
|
| |||||||| || | | | || ||| || |||||||||| ||||||||||| ||||| | ||| | | |||| || |||||||| || |||||| |
|
|
| T |
4026465 |
ggtagatcctacaaacgtacgacatctaaaaaagagttatggaaatgcatttgctgaacttgaaaaaaggcatagttcgttgaaggtgcagatatggaga |
4026366 |
T |
|
| Q |
317 |
catgctttgaacaaatctgctaattcatctggaattaagtcatcagattttcggtaagtt |
376 |
Q |
| |
|
|||||||||||||||||||||| | || ||||||||||||| ||||| ||||| |||| |
|
|
| T |
4026365 |
tatgctttgaacaaatctgctaacttgtcaggaattaagtcattagattatcggttagtt |
4026306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 41 - 271
Target Start/End: Complemental strand, 4220907 - 4220677
Alignment:
| Q |
41 |
cttaagaggggagatgaaataccacaatcacttggcagaggaattgaaggatcactaatttccttgatcatattctcacaagactatgcttcttcacgct |
140 |
Q |
| |
|
||||||| |||||||| ||| |||| |||||||| || ||||||||||||| ||||| ||| |||||||||| || ||||||||||||||| | |
|
|
| T |
4220907 |
cttaagaaaggagatgacatatcacattcacttggtgaagcaattgaaggatcatccatttcattggtcatattctctgaaaactatgcttcttcacatt |
4220808 |
T |
|
| Q |
141 |
ggtgtttggaagaacttgtcacaatacttcaatgcagagagaaatatggacagattgttgtacctattttttatgagatagatcctgcagatggaagata |
240 |
Q |
| |
|
||||||| ||||||||||| | |||| || | |||||||||||||||||||| |||| |||||||||| || ||| |||||||| || ||| | |||| |
|
|
| T |
4220807 |
ggtgtttagaagaacttgtaaaaataattgagtgcagagagaaatatggacaacttgtaatacctattttctacgaggtagatcctacaaatgtacgata |
4220708 |
T |
|
| Q |
241 |
tcaaatgaagagttatgaaaatgcatttgtt |
271 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |
|
|
| T |
4220707 |
tcaaaagaagagttatgaaaatgcatttgtt |
4220677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 82 - 270
Target Start/End: Original strand, 3953041 - 3953229
Alignment:
| Q |
82 |
aattgaaggatcactaatttccttgatcatattctcacaagactatgcttcttcacgctggtgtttggaagaacttgtcacaatacttcaatgcagagag |
181 |
Q |
| |
|
|||||||||||| | ||||| ||||||||||||||| || |||||||||||||||| |||||||| ||||||||||| | |||| || | ||||||||| |
|
|
| T |
3953041 |
aattgaaggatcgttcatttcattgatcatattctcagaaaactatgcttcttcacgttggtgtttagaagaacttgtgaaaataattgagtgcagagag |
3953140 |
T |
|
| Q |
182 |
aaatatggacagattgttgtacctattttttatgagatagatcctgcagatggaagatatcaaatgaagagttatgaaaatgcatttgt |
270 |
Q |
| |
|
||| ||||||||||||| ||||| |||| || ||| ||| |||| |||||| | || |||||| ||||||||||||||||||| |||| |
|
|
| T |
3953141 |
aaaaatggacagattgtaatacctgttttctacgaggtaggtcctacagatgtacgacatcaaaagaagagttatgaaaatgcacttgt |
3953229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 17 - 376
Target Start/End: Complemental strand, 3812120 - 3811761
Alignment:
| Q |
17 |
ataaaagcctttgttgatgatgagcttaagaggggagatgaaataccacaatcacttggcagaggaattgaaggatcactaatttccttgatcatattct |
116 |
Q |
| |
|
||||| |||||| ||||||| | ||||||||||||||||| ||| |||| ||||||| || ||| |||||||| | ||||| ||| ||||||||| |
|
|
| T |
3812120 |
ataaatgcctttcttgatgagaaacttaagaggggagatgacatatcacattcacttgtagaagcaatggaaggatctcccatttcattggtcatattct |
3812021 |
T |
|
| Q |
117 |
cacaagactatgcttcttcacgctggtgtttggaagaacttgtcacaatacttcaatgcagagagaaatatggacagattgttgtacctattttttatga |
216 |
Q |
| |
|
|| || ||||||||||||||| |||||||| || || ||||| | |||| || | |||| ||||| ||||||||| |||| |||||||||| || | |
|
|
| T |
3812020 |
cagaaaactatgcttcttcacattggtgtttagatgagcttgtgaaaataattgagtgcaaagagacatatggacattttgtaatacctattttctacgg |
3811921 |
T |
|
| Q |
217 |
gatagatcctgcagatggaagatatcaaatgaagagttatgaaaatgcatttgttgaacatcaaagagtgtatagctccaccaaggtgcaaatttggaga |
316 |
Q |
| |
|
|||||||| |||||| | || |||||| ||||||||||||||||||||| | ||||||| ||| | |||||| || | ||||||| || |||| | |
|
|
| T |
3811920 |
agtagatcctacagatgtacgacatcaaaagaagagttatgaaaatgcattcgctgaacatgaaaaaaggtatagttcgtctgaggtgcagatatggaaa |
3811821 |
T |
|
| Q |
317 |
catgctttgaacaaatctgctaattcatctggaattaagtcatcagattttcggtaagtt |
376 |
Q |
| |
|
||||||||||| || |||||||||| || ||||||| |||||| ||||| ||||||| |
|
|
| T |
3811820 |
catgctttgaaaaattctgctaatttgtcaggaattacatcatcaagttttccgtaagtt |
3811761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 17 - 376
Target Start/End: Original strand, 3915934 - 3916293
Alignment:
| Q |
17 |
ataaaagcctttgttgatgatgagcttaagaggggagatgaaataccacaatcacttggcagaggaattgaaggatcactaatttccttgatcatattct |
116 |
Q |
| |
|
||||| || ||||||||||| | ||||||||||||||||| ||| || | |||||||| || ||| ||||||||| | ||||| ||||||||||||| |
|
|
| T |
3915934 |
ataaatgcttttgttgatgacaaacttaagaggggagatgacatatcagattcacttggtgaagcaatcgaaggatcattcatttcattgatcatattct |
3916033 |
T |
|
| Q |
117 |
cacaagactatgcttcttcacgctggtgtttggaagaacttgtcacaatacttcaatgcagagagaaatatggacagattgttgtacctattttttatga |
216 |
Q |
| |
|
|| || ||||||||| ||||| |||||||| |||||||||| | |||| || | || | ||||||||||| ||| ||||| ||||| |||| | |
|
|
| T |
3916034 |
cagaaaactatgcttgttcacattggtgtttaaaagaacttgtgaaaatagttgagtgtaaagagaaatatgcacaaattgtaatacctgttttcttcag |
3916133 |
T |
|
| Q |
217 |
gatagatcctgcagatggaagatatcaaatgaagagttatgaaaatgcatttgttgaacatcaaagagtgtatagctccaccaaggtgcaaatttggaga |
316 |
Q |
| |
|
| |||||||| ||||| | || |||||| | |||||||||||||||||||| ||||||| ||| | ||||||||| ||||||| || |||| | |
|
|
| T |
3916134 |
ggtagatcctacagatatacgacatcaaaaaaggagttatgaaaatgcatttgctgaacatgaaaaaaagtatagctcatatgaggtgcagatgtggaaa |
3916233 |
T |
|
| Q |
317 |
catgctttgaacaaatctgctaattcatctggaattaagtcatcagattttcggtaagtt |
376 |
Q |
| |
|
||||||||||| | ||||||||||| || ||||||| |||||| ||||| ||||||| |
|
|
| T |
3916234 |
catgctttgaaaatatctgctaatttgtcaggaattacatcatcaagttttcagtaagtt |
3916293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 17 - 268
Target Start/End: Complemental strand, 3821693 - 3821442
Alignment:
| Q |
17 |
ataaaagcctttgttgatgatgagcttaagaggggagatgaaataccacaatcacttggcagaggaattgaaggatcactaatttccttgatcatattct |
116 |
Q |
| |
|
||||| |||||||||||||| | |||| |||||||||||| ||| |||| |||||| || |||||||||||| | ||||| ||| ||||||||| |
|
|
| T |
3821693 |
ataaatgcctttgttgatgacgcacttacgaggggagatgacatatcacattcactttttgaagcaattgaaggatctcccatttcattggtcatattct |
3821594 |
T |
|
| Q |
117 |
cacaagactatgcttcttcacgctggtgtttggaagaacttgtcacaatacttcaatgcagagagaaatatggacagattgttgtacctattttttatga |
216 |
Q |
| |
|
|| || ||||||||||||||| |||||||| || || ||||| | |||| | | |||| ||||||||||||||||||||| |||||||||| || | |
|
|
| T |
3821593 |
caaaaaactatgcttcttcacattggtgtttagatgagcttgtgaaaataatcgagtgcaaagagaaatatggacagattgtattacctattttctacgg |
3821494 |
T |
|
| Q |
217 |
gatagatcctgcagatggaagatatcaaatgaagagttatgaaaatgcattt |
268 |
Q |
| |
|
|| | || || ||| | || |||||| |||||||||||||||||||||| |
|
|
| T |
3821493 |
agtaaaacccacaaatgtacgacatcaaaagaagagttatgaaaatgcattt |
3821442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 104 - 376
Target Start/End: Original strand, 3927015 - 3927287
Alignment:
| Q |
104 |
ttgatcatattctcacaagactatgcttcttcacgctggtgtttggaagaacttgtcacaatacttcaatgcagagagaaatatggacagattgttgtac |
203 |
Q |
| |
|
||||||||||| ||| || | ||||||| ||||| |||||||| ||||||||||| | |||| || | || | ||||||||||| ||| ||||| ||| |
|
|
| T |
3927015 |
ttgatcatattttcagaaaaatatgcttgttcacattggtgtttagaagaacttgtgaaaatagttgagtgtaaagagaaatatgcacaaattgtaatac |
3927114 |
T |
|
| Q |
204 |
ctattttttatgagatagatcctgcagatggaagatatcaaatgaagagttatgaaaatgcatttgttgaacatcaaagagtgtatagctccaccaaggt |
303 |
Q |
| |
|
| |||| || | |||||||| |||||| | || |||||| | |||||||||||||||||||| ||||||| ||| | ||||||||| |||| |
|
|
| T |
3927115 |
ccgttttctaccgggtagatcctacagatgtacgacatcaaaaaaggagttatgaaaatgcatttgctgaacatgaaaaaaagtatagctcatatgaggt |
3927214 |
T |
|
| Q |
304 |
gcaaatttggagacatgctttgaacaaatctgctaattcatctggaattaagtcatcagattttcggtaagtt |
376 |
Q |
| |
|
||| || |||| |||||||||||| | ||||||||||| || ||||||| |||||| ||||| ||||||| |
|
|
| T |
3927215 |
gcacatgtggaaacatgctttgaaaacatctgctaatttgtcaggaattacatcatcaagttttcagtaagtt |
3927287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 290
Target Start/End: Complemental strand, 3960453 - 3960391
Alignment:
| Q |
228 |
cagatggaagatatcaaatgaagagttatgaaaatgcatttgttgaacatcaaagagtgtata |
290 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| ||||||||| | |||||||||||||||||| |
|
|
| T |
3960453 |
cagatgtaagatatcaaaacaagagttatgattatgcatttggttaacatcaaagagtgtata |
3960391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 437
Target Start/End: Complemental strand, 3805603 - 3805547
Alignment:
| Q |
382 |
tattttttacgtcata-atttttagactatctggcctccattatttttaaaataaat |
437 |
Q |
| |
|
|||||||||| ||||| ||||||||| ||| ||||||||||||||||||| |||||| |
|
|
| T |
3805603 |
tattttttacctcatacatttttagagtatttggcctccattatttttaagataaat |
3805547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 159
Target Start/End: Complemental strand, 3988293 - 3988176
Alignment:
| Q |
42 |
ttaagaggggagatgaaataccacaatcacttggcagaggaattgaaggatcactaatttccttgatcatattctcacaagactatgcttcttcacgctg |
141 |
Q |
| |
|
||||||||||||||||||| ||| ||||||| || ||||||||| || ||||||| ||| ||||||||||| || | ||| ||||||||| || |
|
|
| T |
3988293 |
ttaagaggggagatgaaatcaaacattcacttgttgaagcaattgaaggctcgttaatttcattggtcatattctcaaaaaattattcttcttcacattg |
3988194 |
T |
|
| Q |
142 |
gtgtttggaagaacttgt |
159 |
Q |
| |
|
|||||| || |||||||| |
|
|
| T |
3988193 |
gtgtttagatgaacttgt |
3988176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 498
Target Start/End: Original strand, 3962793 - 3962837
Alignment:
| Q |
454 |
caactgaatggtttcacttgaaagtgaaacttttaagttgttatt |
498 |
Q |
| |
|
|||||||||| ||| ||||||||||| | |||||||||||||||| |
|
|
| T |
3962793 |
caactgaatgtttttacttgaaagtgtagcttttaagttgttatt |
3962837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 41 - 275
Target Start/End: Complemental strand, 13399246 - 13399012
Alignment:
| Q |
41 |
cttaagaggggagatgaaataccacaatcacttggcagaggaattgaaggatcactaatttccttgatcatattctcacaagactatgcttcttcacgct |
140 |
Q |
| |
|
|||||||||||| |||| ||| |||| |||||| || ||| ||||||||| | ||||| ||||||||||||||| || |||||||||||||||| | |
|
|
| T |
13399246 |
cttaagaggggaaatgacatatcacattcactttttgaagcaatcgaaggatcatttatttcattgatcatattctcagaaaactatgcttcttcacgtt |
13399147 |
T |
|
| Q |
141 |
ggtgtttggaagaacttgtcacaatacttcaatgcagagagaaatatggacagattgttgtacctattttttatgagatagatcctgcagatggaagata |
240 |
Q |
| |
|
||||||| ||||||||||| | |||| || | |||| ||||||||||||||| ||||| ||||| |||| || | ||||||| | |||| | || | |
|
|
| T |
13399146 |
ggtgtttagaagaacttgtgaaaataattgagtgcaaagagaaatatggacaaattgtaatacctgttttctacggagtagatcccaccgatgtacgaca |
13399047 |
T |
|
| Q |
241 |
tcaaatgaagagttatgaaaatgcatttgttgaac |
275 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |
|
|
| T |
13399046 |
tcaaaagaagagttatgaaaatgcatttgttgaac |
13399012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 159
Target Start/End: Complemental strand, 42862390 - 42862281
Alignment:
| Q |
50 |
ggagatgaaataccacaatcacttggcagaggaattgaaggatcactaatttccttgatcatattctcacaagactatgcttcttcacgctggtgtttgg |
149 |
Q |
| |
|
|||||||||||| || || |||||| || || |||||||||||||| || || ||||| ||||| || ||||||||||||||||| ||||| |||| |
|
|
| T |
42862390 |
ggagatgaaatatcaaaagcacttgtcaaagccattgaaggatcactcatgtctttgataatattttccaaagactatgcttcttcaaagtggtgcttgg |
42862291 |
T |
|
| Q |
150 |
aagaacttgt |
159 |
Q |
| |
|
|||| ||||| |
|
|
| T |
42862290 |
aagagcttgt |
42862281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 196
Target Start/End: Complemental strand, 7087050 - 7086962
Alignment:
| Q |
108 |
tcatattctcacaagactatgcttcttcacgctggtgtttggaagaacttgtcacaatacttcaatgcagagagaaatatggacagatt |
196 |
Q |
| |
|
|||||||||| ||| |||||||||||||| ||||||||||| || ||||||| ||| || | || ||||||||| ||||||||||| |
|
|
| T |
7087050 |
tcatattctctcaaaactatgcttcttcaaaatggtgtttggatgagcttgtcaaaattgttgagtgtagagagaaagatggacagatt |
7086962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 539
Target Start/End: Complemental strand, 2666202 - 2666169
Alignment:
| Q |
506 |
actagcatccagacggtcactcccgtgcccgtct |
539 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
2666202 |
actagcatccagacgggcactcccgtgcccgtct |
2666169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University