View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19381_low_11 (Length: 494)
Name: NF19381_low_11
Description: NF19381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19381_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 147 - 476
Target Start/End: Complemental strand, 23667229 - 23666899
Alignment:
| Q |
147 |
cgtccttataattttgatactacatattatggattaatacaaaactatagaggttgaaggttgaacgattatgattaaaaaacactgttgaaaggggt-t |
245 |
Q |
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| T |
23667229 |
cgtccttataattttgatactccatattatggattaatacaaaactatagaggttgaaggttgaacgattatgattaaaaaacactgttgaaaggggtat |
23667130 |
T |
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| Q |
246 |
gtaacagttgaacagttcacatatccatgaaagtagaacatgcatgaatttctgagcctcattttcgtaccatatattatagcttctgcaaaattagccc |
345 |
Q |
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| T |
23667129 |
gtaacagttgaacagttcacatatccatgaaagtagaacatgcatgaatttctgagcctcattttcgtaccatatattatagcttctgcaaaattagccc |
23667030 |
T |
|
| Q |
346 |
acactgctgtgttatttacttgcttctttttgctttatctttcgatatgtttcttctttgagacccacacacaccgacatttttggaatctgaggtaact |
445 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23667029 |
acactgctgtgttatttacttgcttctttttgctttatctttcgatatgtttcttctttgagacccacacacaccgacatttttggaatctgaggtaact |
23666930 |
T |
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| Q |
446 |
atttactgcctacgtagtacaaagacacgga |
476 |
Q |
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| T |
23666929 |
atttactgcctacgtagtacaaagacacgga |
23666899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 23667375 - 23667314
Alignment:
| Q |
1 |
ccagtgtctataaagttggtaacggtctctggcattaatggttgtataggtccccactcttg |
62 |
Q |
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| T |
23667375 |
ccagtgtctataaagttggtaacggtctctggcattaatggttgtataggtccccactcttg |
23667314 |
T |
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