View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19381_low_14 (Length: 458)
Name: NF19381_low_14
Description: NF19381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19381_low_14 |
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| [»] scaffold0087 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 66 - 304
Target Start/End: Complemental strand, 30050929 - 30050690
Alignment:
| Q |
66 |
ttggcatttagcatacataaatcatagaatttgtgtatcaaacttaaatgcaacatcagccagaatctttttatgtaccatatacttaaccattgattta |
165 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30050929 |
ttggcatttagcatacataaatcatagaatttgtgtatcaaacttaaatgcaacatcagccagaatctttttatgtaccatatacttaaccattgattta |
30050830 |
T |
|
| Q |
166 |
atgttaaataattcaagggttaagattgaagactgggtac-ttgcttagtggatttgatgttcaattgttggtatttgcaaatatagtgtggaacaacaa |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30050829 |
atgttaaataattcaagggttaagattgaagactgggtactttgcttagtggatttgatgttcaattgttggtatttgcaaatatagtgtggaacaacaa |
30050730 |
T |
|
| Q |
265 |
tagaattgcattgatgcgtttatggaaaaaaccttattac |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30050729 |
tagaattgcattgatgcgtttatggaaaaaaccttattac |
30050690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 174 - 302
Target Start/End: Complemental strand, 30064821 - 30064692
Alignment:
| Q |
174 |
taattcaagggttaagattgaagactgggtactt-gcttagtggatttgatgttcaattgttggtatttgcaaatatagtgtggaacaacaatagaattg |
272 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
30064821 |
taattcaagggttaagattgaagactgggtactttgcttagtggatttgatgttcaattgttggtatttgcaaatatggtgtggaacaacaatagaattg |
30064722 |
T |
|
| Q |
273 |
cattgatgcgtttatggaaaaaaccttatt |
302 |
Q |
| |
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|||||||| |||||||| |||| |||||| |
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| T |
30064721 |
tattgatgcatttatggagaaaaacttatt |
30064692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 151 - 257
Target Start/End: Complemental strand, 40863498 - 40863392
Alignment:
| Q |
151 |
ttaaccattgatttaatgttaaataattcaagggttaagattgaagactgggtacttgcttagtggatttgatgttcaattgttggtatttgcaaatata |
250 |
Q |
| |
|
|||||||||||| |||| ||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
40863498 |
ttaaccattgatataatattaaataattcaatggtcaagattgaagaatgggtacttgcttagtggatttgatgctcaattgttgctatttgcaaatatg |
40863399 |
T |
|
| Q |
251 |
gtgtgga |
257 |
Q |
| |
|
||||||| |
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|
| T |
40863398 |
gtgtgga |
40863392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 380 - 442
Target Start/End: Complemental strand, 30050616 - 30050554
Alignment:
| Q |
380 |
tactacttctttttctaatgtaagaaccgagtagttataaggaaaaaataaaataagattaat |
442 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30050616 |
tactacttctttttctaatgtaagaaccgagtagttataaggaaaaaataaaataagattaat |
30050554 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 30051035 - 30050982
Alignment:
| Q |
16 |
agcagtaagcaaacaaataaccaaaactccccagctgtgttacgtttagcttgg |
69 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
30051035 |
agcagtaagcaaacaaataaccaaaactctccagctgtgttacgtttagcttgg |
30050982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 175 - 249
Target Start/End: Complemental strand, 1055238 - 1055164
Alignment:
| Q |
175 |
aattcaagggttaagattgaagactgggtacttgcttagtggatttgatgttcaattgttggtatttgcaaatat |
249 |
Q |
| |
|
||||||| || || ||||||||| |||||||||| ||||||| |||| ||||||||||||||||||||||||||| |
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| T |
1055238 |
aattcaatggctaggattgaagaatgggtacttgtttagtgggtttgttgttcaattgttggtatttgcaaatat |
1055164 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 154 - 288
Target Start/End: Complemental strand, 41234894 - 41234760
Alignment:
| Q |
154 |
accattgatttaatgttaaataattcaagggttaagattgaagactgggtacttgcttagtggatttgatgttcaattgttggtatttgcaaatatagtg |
253 |
Q |
| |
|
||||||||| || | ||||| ||||||| || ||||||| |||| || ||||||| ||||| | |||| |||| |||||||||||||||| ||| ||| |
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|
| T |
41234894 |
accattgatatattattaaaaaattcaatggctaagattaaagaatgagtacttgtttagtaggtttggtgtttgtttgttggtatttgcaagtatggtg |
41234795 |
T |
|
| Q |
254 |
tggaacaacaatagaattgcattgatgcgtttatg |
288 |
Q |
| |
|
| |||||||||| ||||| |||||| | |||||| |
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|
| T |
41234794 |
tccaacaacaatataattgaattgatacatttatg |
41234760 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 151 - 257
Target Start/End: Complemental strand, 3981471 - 3981365
Alignment:
| Q |
151 |
ttaaccattgatttaatgttaaataattcaagggttaagattgaagactgggtacttgcttagtggatttgatgttcaattgttggtatttgcaaatata |
250 |
Q |
| |
|
|||||| ||||| |||| ||||||||||||| | ||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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|
| T |
3981471 |
ttaaccgttgatataatattaaataattcaattgccaagattgaagaatgggtacttgcttagtggatttgatgctcaattgttgctatttgcaaatatg |
3981372 |
T |
|
| Q |
251 |
gtgtgga |
257 |
Q |
| |
|
||||||| |
|
|
| T |
3981371 |
gtgtgga |
3981365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 154 - 281
Target Start/End: Original strand, 9268374 - 9268502
Alignment:
| Q |
154 |
accattgatttaatgttaaataattcaagggttaagattgaagactgggtacttgcttagtggatttgatgttcaattgttggtatttgcaaatatagtg |
253 |
Q |
| |
|
||||||||| |||| ||||| ||||||| || ||||||||||| || ||||||| ||||||| |||| ||||||||||||||||||||||||| | ||| |
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|
| T |
9268374 |
accattgatataatattaaacaattcaatggccaagattgaagaatgagtacttgtttagtgggtttgttgttcaattgttggtatttgcaaatgtggtg |
9268473 |
T |
|
| Q |
254 |
tggaac-aacaatagaattgcattgatgc |
281 |
Q |
| |
|
| ||| || ||||||||||||||||||| |
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|
| T |
9268474 |
tccaactaataatagaattgcattgatgc |
9268502 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 154 - 288
Target Start/End: Complemental strand, 41962134 - 41962000
Alignment:
| Q |
154 |
accattgatttaatgttaaataattcaagggttaagattgaagactgggtacttgcttagtggatttgatgttcaattgttggtatttgcaaatatagtg |
253 |
Q |
| |
|
||||||||| || | ||||| ||||||| || ||||||| |||| || ||||||| ||||| | |||| |||| |||||||||||||||| ||| ||| |
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|
| T |
41962134 |
accattgatatattattaaaaaattcaatggctaagattaaagaatgagtacttgtttagtaggtttggtgtttgtttgttggtatttgcaagtatggtg |
41962035 |
T |
|
| Q |
254 |
tggaacaacaatagaattgcattgatgcgtttatg |
288 |
Q |
| |
|
| |||||||||||||||| |||||| | |||||| |
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|
| T |
41962034 |
tccaacaacaatagaattgaattgatacatttatg |
41962000 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 151 - 257
Target Start/End: Original strand, 21996901 - 21997007
Alignment:
| Q |
151 |
ttaaccattgatttaatgttaaataattcaagggttaagattgaagactgggtacttgcttagtggatttgatgttcaattgttggtatttgcaaatata |
250 |
Q |
| |
|
||||||||| || |||| |||||||||| || || ||||||||||| ||||||||||||||||| ||||||| |||||||||| ||||||||||||| |
|
|
| T |
21996901 |
ttaaccattaatataatattaaataatttaatggccaagattgaagaatgggtacttgcttagtgagtttgatgctcaattgttgctatttgcaaatatg |
21997000 |
T |
|
| Q |
251 |
gtgtgga |
257 |
Q |
| |
|
||||||| |
|
|
| T |
21997001 |
gtgtgga |
21997007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 156 - 287
Target Start/End: Complemental strand, 54174673 - 54174542
Alignment:
| Q |
156 |
cattgatttaatgttaaataattcaagggttaagattgaagactgggtacttgcttagtggatttgatgttcaattgttggtatttgcaaatatagtgtg |
255 |
Q |
| |
|
||||||| || | ||||||||||||| || |||||||||||| ||| |||||| ||| | | |||||||| || | ||||||||||||||||| ||| |
|
|
| T |
54174673 |
cattgatatattattaaataattcaatggctaagattgaagaatggatacttgtttaataggtttgatgtataagtattggtatttgcaaatatgatgtc |
54174574 |
T |
|
| Q |
256 |
gaacaacaatagaattgcattgatgcgtttat |
287 |
Q |
| |
|
||||| |||||||||||| |||||| ||||| |
|
|
| T |
54174573 |
caacaataatagaattgcactgatgcatttat |
54174542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0087
Description:
Target: scaffold0087; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 169 - 271
Target Start/End: Complemental strand, 26573 - 26471
Alignment:
| Q |
169 |
ttaaataattcaagggttaagattgaagactgggtacttgcttagtggatttgatgttcaattgttggtatttgcaaatatagtgtggaacaacaataga |
268 |
Q |
| |
|
||||||||||||| ||| ||||||||||| || ||||||| || ||| |||| |||||||||||||||||||||||||| |||| ||||| || ||| |
|
|
| T |
26573 |
ttaaataattcaatggtcaagattgaagaatgagtacttgtgtaatgggtttggggttcaattgttggtatttgcaaatatggtgtccaacaataacaga |
26474 |
T |
|
| Q |
269 |
att |
271 |
Q |
| |
|
||| |
|
|
| T |
26473 |
att |
26471 |
T |
|
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