View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19381_low_17 (Length: 441)
Name: NF19381_low_17
Description: NF19381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19381_low_17 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 20 - 441
Target Start/End: Complemental strand, 41747358 - 41746941
Alignment:
| Q |
20 |
gaacaacgaactaacgaacttaactaattaattagtataactaacttttgcacctaataacttttctccattatgcagcaaactcaacattgatgaatcc |
119 |
Q |
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| T |
41747358 |
gaacaacgaactaacgaacttaactaattaattagtataactaacttttgcacctaataacttttctccattatgcagcaaactcaacattgatgaatcc |
41747259 |
T |
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| Q |
120 |
attgcaaccatgttgtgtgggagtgagttcaagttattattgtggaagtgtcgatgagaaaggagcaaagaaatatagtgtatgtgataagccagggctt |
219 |
Q |
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| T |
41747258 |
attgcaaccatgttgtgtgggagtgagttcaagttattattgtggaagtgtcgatgagaaaggagcaaagaaatatagtgtatgtgataaaccagggctt |
41747159 |
T |
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| Q |
220 |
tcattctattggaacaatttccatccttctcaaaatggttggcatgcagtttacaagagggtgcaatcttctctccgcaaatttgaagatatataaaaac |
319 |
Q |
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| T |
41747158 |
tcattctattggaacaatttccatccttctcaaaatggttggcatgcagtttacaagagggtgcaatcttctctccgcaaaattgaag----ataaaaac |
41747063 |
T |
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| Q |
320 |
ctttaattcttaccaaatattgtattgttttagtaaaacctgaaatttcagtgtgcgcaaactacccaataaagaataacgttataaacccactcttcac |
419 |
Q |
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| T |
41747062 |
ctctaattcttaccgaatattgtattgttttagtaaaacctgaaatttcagtgtgcgcaaactacccaataaagaataacgttagaaacacactctttac |
41746963 |
T |
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| Q |
420 |
cacggtctttcttattattagt |
441 |
Q |
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| T |
41746962 |
cacggtcttttttattattagt |
41746941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 93 - 263
Target Start/End: Complemental strand, 41753647 - 41753477
Alignment:
| Q |
93 |
tgcagcaaactcaacattgatgaatccattgcaaccatgttgtgtgggagtgagttcaagttattattgtggaagtgtcgatgagaaaggagcaaagaaa |
192 |
Q |
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| T |
41753647 |
tgcagaaaactcaacactgatgaatccattgaaagcgtgttgtgtgggagatggtttgaaaaataattgtggaagtgtggatgataaaggagaaaagaaa |
41753548 |
T |
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| Q |
193 |
tatagtgtatgtgataagccagggctttcattctattggaacaatttccatccttctcaaaatggttggca |
263 |
Q |
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| T |
41753547 |
tatagtgtatgtgagaaaccagagctttcattcttttgggacggtgtacatccttctcaaaatggttggca |
41753477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 99 - 273
Target Start/End: Complemental strand, 41732615 - 41732441
Alignment:
| Q |
99 |
aaactcaacattgatgaatccattgcaaccatgttgtgtgggagtgagttcaagttattattgtggaagtgtcgatgagaaaggagcaaagaaatatagt |
198 |
Q |
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| T |
41732615 |
aaactcaacagtgatgaatccgttgcaaccgtgttgtaagggagaggatttgaaatatttttgtggaagtgttgataataaaggagcaaggaaatatagt |
41732516 |
T |
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| Q |
199 |
gtatgtgataagccagggctttcattctattggaacaatttccatccttctcaaaatggttggcatgcagtttac |
273 |
Q |
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| T |
41732515 |
gtatgtgagaagcttgagtcttcactcttttgggacacagttcacccttctcaaaatggttggtatgaagtttac |
41732441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 81 - 295
Target Start/End: Complemental strand, 41758043 - 41757829
Alignment:
| Q |
81 |
ttttctccattatgcagcaaactcaacattgatgaatccattgcaaccatgttgtgtgggagtgagttcaagttattattgtggaagtgtcgatgagaaa |
180 |
Q |
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| T |
41758043 |
ttttctccattgtacagaaaactcaaccctgatgaatccactgaaatcatgttgtgagggagatggtttgacaaatacttgtggaaaagtggatgataat |
41757944 |
T |
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| Q |
181 |
ggagcaaagaaatatagtgtatgtgataagccagggctttcattctattggaacaatttccatccttctcaaaatggttggcatgcagtttacaagaggg |
280 |
Q |
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| T |
41757943 |
ggagaaaagaaatacagtttatgtgagaaaccaaagctttcattcttttgggacaatgttcacccttctcaaaatggttggcatgctgtctacacactgt |
41757844 |
T |
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| Q |
281 |
tgcaatcttctctcc |
295 |
Q |
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| T |
41757843 |
tgcaatcttctctcc |
41757829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 41738650 - 41738618
Alignment:
| Q |
110 |
tgatgaatccattgcaaccatgttgtgtgggag |
142 |
Q |
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| T |
41738650 |
tgatgaatccgttgcaaccatgttgtgtgggag |
41738618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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