View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19381_low_2 (Length: 630)
Name: NF19381_low_2
Description: NF19381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19381_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 534; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 15 - 615
Target Start/End: Original strand, 42769488 - 42770088
Alignment:
| Q |
15 |
catagggaaagtgagaggaggaagagataaacatggaacatggtgatagatgtttgtagtaatggatgtttgttactagctagcttttgtaaaagatttg |
114 |
Q |
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| T |
42769488 |
catagggaaagtgagaggaggaagagataaacatggaacatggtgatagatgtttgtagtaatggatgtttgttactagctagcttttgtaaaagatttg |
42769587 |
T |
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| Q |
115 |
tgttttctaatgatgtctttaggggtgaaaagtgtgaatgtgtcataattgattttgagggaagttagtttgtgcttaactttgaaggaaagccattaat |
214 |
Q |
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| T |
42769588 |
tgttttctaatgatgtctttaggggtgaaaagtgtgaatgtgtcataattgattttgagggaagttagtttgtgcttaactttgaaggaaagccattaat |
42769687 |
T |
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| Q |
215 |
agtctatctatgcgtttggtggagatttatttnnnnnnnnnnnnnnnnnnnnngagtggactctataataagaattgatgtttttggcttattatgattg |
314 |
Q |
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| T |
42769688 |
agtctatctatgcgtttggtggagatttatttaaaaaagaaaaaagaaaaaaagagtggactctataataagaattgatgtttttggcttattatgattg |
42769787 |
T |
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| Q |
315 |
gttagaatttataatctaacaatataagagtacaagacattatggtctcatataagatacacttgtgtccagtggggctattcctttttgtggtagctat |
414 |
Q |
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| T |
42769788 |
gttagaatttataatctaacaatataagagtacaagacattatggtctcatataagatacacttgtgtctagtggggctattcctttttgtggtagctat |
42769887 |
T |
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| Q |
415 |
gatttttataagatattgcagattatgtctgcatattgtgcttgcctttgaagctatgttataatcatataagttatgacattataatttcagcattgtt |
514 |
Q |
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| T |
42769888 |
gatttttataagatattgcagattatgtctgcatattgtgcttgcctttgaagctatgttataatcatataagttatgacattataatttcagcattgtt |
42769987 |
T |
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| Q |
515 |
tttgttttctaaaaatttataattataatcacagagagatagtttttggacccttgtactatttaattatatacattgacatgttatacaatattgtttt |
614 |
Q |
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| T |
42769988 |
tttgttttctaaaaatttataattataatcacagagagatagtttttggacccttgtactatttaattatatacattgacatgttatacaatattgtttt |
42770087 |
T |
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| Q |
615 |
t |
615 |
Q |
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| T |
42770088 |
t |
42770088 |
T |
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