View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19381_low_22 (Length: 380)

Name: NF19381_low_22
Description: NF19381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19381_low_22
NF19381_low_22
[»] chr1 (5 HSPs)
chr1 (174-277)||(48990904-48991007)
chr1 (174-277)||(48985991-48986094)
chr1 (168-278)||(52432979-52433089)
chr1 (174-277)||(25491998-25492101)
chr1 (184-254)||(19880742-19880812)
[»] chr7 (8 HSPs)
chr7 (174-277)||(46169318-46169421)
chr7 (169-278)||(10092305-10092415)
chr7 (174-254)||(46164429-46164509)
chr7 (171-277)||(46513556-46513658)
chr7 (171-254)||(41097620-41097703)
chr7 (195-254)||(26339949-26340008)
chr7 (188-254)||(46582469-46582535)
chr7 (169-267)||(46510797-46510897)
[»] chr4 (7 HSPs)
chr4 (175-277)||(22536871-22536972)
chr4 (177-275)||(1856676-1856773)
chr4 (170-244)||(10032285-10032359)
chr4 (171-284)||(55205891-55206001)
chr4 (171-277)||(50348145-50348251)
chr4 (171-227)||(55203347-55203403)
chr4 (170-242)||(2515585-2515658)
[»] scaffold0060 (1 HSPs)
scaffold0060 (174-254)||(11140-11221)
[»] chr3 (3 HSPs)
chr3 (171-275)||(34373959-34374063)
chr3 (184-276)||(12772484-12772576)
chr3 (171-254)||(34374788-34374870)
[»] chr6 (4 HSPs)
chr6 (171-284)||(6356377-6356490)
chr6 (188-254)||(12257332-12257398)
chr6 (188-254)||(12258017-12258083)
chr6 (188-254)||(22748794-22748859)
[»] chr5 (5 HSPs)
chr5 (184-254)||(21632566-21632637)
chr5 (184-254)||(21640813-21640884)
chr5 (188-278)||(8740447-8740537)
chr5 (214-277)||(8740574-8740637)
chr5 (179-278)||(6596867-6596967)
[»] chr2 (5 HSPs)
chr2 (170-242)||(18259212-18259285)
chr2 (170-242)||(10257744-10257817)
chr2 (170-243)||(33669536-33669610)
chr2 (170-254)||(34227227-34227310)
chr2 (170-256)||(34226952-34227039)


Alignment Details
Target: chr1 (Bit Score: 76; Significance: 5e-35; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 174 - 277
Target Start/End: Original strand, 48990904 - 48991007
Alignment:
Q  174 ttttgtttaattttaatctgaaccattgaatccttttttaccacatgtcattcatccaagaccctaaatggggtaaatggaactgatggtaaatgaagca 273  Q
    ||||||||| ||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||| ||| ||||||||| ||||    
T  48990904 ttttgtttatttttaatctgaaccattgaatccatttttgccacatgtcactcatccaagaccctaaatggggtaaatggagctggtggtaaatggagca 48991003  T
Q  274 tacc 277  Q
    ||||    
T  48991004 tacc 48991007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 174 - 277
Target Start/End: Complemental strand, 48986094 - 48985991
Alignment:
Q  174 ttttgtttaattttaatctgaaccattgaatccttttttaccacatgtcattcatccaagaccctaaatggggtaaatggaactgatggtaaatgaagca 273  Q
    ||||||||| |||||||||||| |||||||||| ||||| |||||||||| ||||||||||||||||||| |||||||||| ||| ||||||||| ||||    
T  48986094 ttttgtttatttttaatctgaatcattgaatccatttttgccacatgtcactcatccaagaccctaaatgaggtaaatggagctggtggtaaatggagca 48985995  T
Q  274 tacc 277  Q
    ||||    
T  48985994 tacc 48985991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 168 - 278
Target Start/End: Complemental strand, 52433089 - 52432979
Alignment:
Q  168 ctaatgttttgtttaattttaatctgaaccattgaatccttttttaccacatgtcattcatccaagaccctaaatggggtaaatggaactgatggtaaat 267  Q
    ||||| ||||||||| ||||||||||||||||||||| | ||| | |||| |||||||||||||||||||||||||||||||||  | ||||||||||||    
T  52433089 ctaatattttgtttatttttaatctgaaccattgaattcatttgtgccacgtgtcattcatccaagaccctaaatggggtaaataaagctgatggtaaat 52432990  T
Q  268 gaagcataccc 278  Q
    | |||||||||    
T  52432989 ggagcataccc 52432979  T

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Target: chr1; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 174 - 277
Target Start/End: Original strand, 25491998 - 25492101
Alignment:
Q  174 ttttgtttaattttaatctgaaccattgaatccttttttaccacatgtcattcatccaagaccctaaatggggtaaatggaactgatggtaaatgaagca 273  Q
    ||||||||| ||||||||||||||||||||||| ||||| |||||| ||| |||||||||||||||||||||||| |||||  || ||||||||| ||||    
T  25491998 ttttgtttatttttaatctgaaccattgaatccatttttgccacatatcactcatccaagaccctaaatggggtatatggagttggtggtaaatggagca 25492097  T
Q  274 tacc 277  Q
    ||||    
T  25492098 tacc 25492101  T

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Target: chr1; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 184 - 254
Target Start/End: Original strand, 19880742 - 19880812
Alignment:
Q  184 ttttaatctgaaccattgaatccttttttaccacatgtcattcatccaagaccctaaatggggtaaatgga 254  Q
    ||||||||| ||||||||||||| ||||| |||| ||||| ||||||||||||||||||||||||||||||    
T  19880742 ttttaatcttaaccattgaatccatttttgccacttgtcagtcatccaagaccctaaatggggtaaatgga 19880812  T

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Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 174 - 277
Target Start/End: Original strand, 46169318 - 46169421
Alignment:
Q  174 ttttgtttaattttaatctgaaccattgaatccttttttaccacatgtcattcatccaagaccctaaatggggtaaatggaactgatggtaaatgaagca 273  Q
    ||||||||| |||||||||||| |||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||| ||| ||||||||| ||||    
T  46169318 ttttgtttatttttaatctgaatcattgaatccatttttgccacatgtcactcatccaagaccctaaatggggtaaatggagctggtggtaaatggagca 46169417  T
Q  274 tacc 277  Q
    ||||    
T  46169418 tacc 46169421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 169 - 278
Target Start/End: Original strand, 10092305 - 10092415
Alignment:
Q  169 taatgttttgtttaattttaatctgaaccattgaatcctttttta-ccacatgtcattcatccaagaccctaaatggggtaaatggaactgatggtaaat 267  Q
    |||||||||||||| ||||||||| ||||||| || | ||||||  ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  10092305 taatgttttgtttatttttaatctcaaccattcaaacattttttttccacatgtcattcatccaagaccttaaatggggtaaatggagctgatggtaaat 10092404  T
Q  268 gaagcataccc 278  Q
    | |||||||||    
T  10092405 ggagcataccc 10092415  T

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Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 174 - 254
Target Start/End: Complemental strand, 46164509 - 46164429
Alignment:
Q  174 ttttgtttaattttaatctgaaccattgaatccttttttaccacatgtcattcatccaagaccctaaatggggtaaatgga 254  Q
    ||||||||| ||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||    
T  46164509 ttttgtttatttttaatctgaaccattgaatccatttttgccacatgtcactcatccaagaccctaaatggggtaaatgga 46164429  T

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Target: chr7; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 171 - 277
Target Start/End: Original strand, 46513556 - 46513658
Alignment:
Q  171 atgttttgtttaattttaatctgaaccattgaatccttttttaccacatgtcattcatccaagaccctaaatggggtaaatggaactgatggtaaatgaa 270  Q
    |||||||||||| |||||||||||||||    |||||||||| |||| ||||||||||||||| |||||||| |||||||| || ||||||||||||  |    
T  46513556 atgttttgtttatttttaatctgaacca----atcctttttttccacgtgtcattcatccaagtccctaaattgggtaaatagagctgatggtaaatcga 46513651  T
Q  271 gcatacc 277  Q
    |||||||    
T  46513652 gcatacc 46513658  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 171 - 254
Target Start/End: Original strand, 41097620 - 41097703
Alignment:
Q  171 atgttttgtttaattttaatctgaaccattgaatccttttttac-cacatgtcattcatccaagaccctaaatggggtaaatgga 254  Q
    |||||||||||| ||||||||| ||||||| |||| ||||||   |||||||||||||||||||| | |||||||||||||||||    
T  41097620 atgttttgttta-ttttaatctaaaccatttaatcatttttttgtcacatgtcattcatccaagatcttaaatggggtaaatgga 41097703  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 254
Target Start/End: Original strand, 26339949 - 26340008
Alignment:
Q  195 accattgaatccttttttaccacatgtcattcatccaagaccctaaatggggtaaatgga 254  Q
    ||||||||||||||||||||||  |||||||||||||| ||| ||||| | |||||||||    
T  26339949 accattgaatccttttttaccagttgtcattcatccaataccttaaatagagtaaatgga 26340008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 254
Target Start/End: Original strand, 46582469 - 46582535
Alignment:
Q  188 aatctgaaccattgaatccttttttaccacatgtcattcatccaagaccctaaatggggtaaatgga 254  Q
    ||||| || ||||||||| |||||| |||| |||| |||||||||||||||||||||  ||||||||    
T  46582469 aatctcaatcattgaatctttttttgccacttgtctttcatccaagaccctaaatggtataaatgga 46582535  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 267
Target Start/End: Complemental strand, 46510897 - 46510797
Alignment:
Q  169 taatgttttgtttaattttaatctgaaccattgaatccttttttac--cacatgtcattcatccaagaccctaaatggggtaaatggaactgatggtaaa 266  Q
    |||||||||| ||| ||||||||| |||||||||| | ||||||    |||||||||||||||||| | |||||||| | ||||| ||  ||||||||||    
T  46510897 taatgttttggttatttttaatctcaaccattgaaactttttttttttcacatgtcattcatccaaaatcctaaatgagataaatagagttgatggtaaa 46510798  T
Q  267 t 267  Q
    |    
T  46510797 t 46510797  T

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Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 175 - 277
Target Start/End: Original strand, 22536871 - 22536972
Alignment:
Q  175 tttgtttaattttaatctgaaccattgaatccttttttaccacatgtcattcatccaagaccctaaatggggtaaatggaactgatggtaaatgaagcat 274  Q
    |||||||| ||| |||||||| ||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||| |  ||||||||||||||||    
T  22536871 tttgtttattttaaatctgaatcattgaatt-ttttttaccacatgtcattcatccaacaccctaaatggggtaaatggagcatatggtaaatgaagcat 22536969  T
Q  275 acc 277  Q
    |||    
T  22536970 acc 22536972  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 177 - 275
Target Start/End: Original strand, 1856676 - 1856773
Alignment:
Q  177 tgtttaattttaatctgaaccattgaatccttttttaccacatgtcattcatccaagaccctaaatggggtaaatggaactgatggtaaatgaagcata 275  Q
    |||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||   ||||||||| ||||||    
T  1856676 tgtttattttaaatctgaaccattgaatccttttttgccacatgtcattcatccaaga-cctaaatggtgtaaatggaacatgtggtaaatggagcata 1856773  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 170 - 244
Target Start/End: Original strand, 10032285 - 10032359
Alignment:
Q  170 aatgttttgtttaattttaatctgaaccattgaatccttttttaccacatgtcattcatccaagaccctaaatgg 244  Q
    ||||||||||||| |||||||||||| ||||||||||||||||  |||||||||||||||||||| |||||||||    
T  10032285 aatgttttgtttatttttaatctgaatcattgaatccttttttgtcacatgtcattcatccaagatcctaaatgg 10032359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 171 - 284
Target Start/End: Original strand, 55205891 - 55206001
Alignment:
Q  171 atgttttgtttaattttaatctgaaccattgaatcc-ttttttaccacatgtcattcatccaagaccctaaatggggtaaatggaactgatggtaaatga 269  Q
    |||||||||||| ||||||||||||    ||||| | |||||| |||||||||||||||||| || ||||||| ||||||||||| |||||  |||||||    
T  55205891 atgttttgtttatttttaatctgaa----tgaattcatttttttccacatgtcattcatccaggatcctaaatagggtaaatggagctgatattaaatga 55205986  T
Q  270 agcatacccaaactc 284  Q
    |||||||||| ||||    
T  55205987 agcatacccagactc 55206001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 171 - 277
Target Start/End: Original strand, 50348145 - 50348251
Alignment:
Q  171 atgttttgtttaattttaatctgaaccattgaatccttttttaccacatgtcattcatccaagaccctaaatggggtaaatggaactgatggtaaatgaa 270  Q
    ||||||| |||| ||  ||| |||||||||||||| ||||||| |||||||||||||||||| ||||||||||| ||||||| | |   ||||||||| |    
T  50348145 atgttttctttatttaaaatatgaaccattgaatctttttttatcacatgtcattcatccaataccctaaatggagtaaatgaagcatgtggtaaatgga 50348244  T
Q  271 gcatacc 277  Q
    |||||||    
T  50348245 gcatacc 50348251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 55203403 - 55203347
Alignment:
Q  171 atgttttgtttaattttaatctgaaccattgaatccttttttaccacatgtcattca 227  Q
    |||||||||||| ||||||||||||||||||||||| ||| | ||||||||||||||    
T  55203403 atgttttgtttatttttaatctgaaccattgaatccctttcttccacatgtcattca 55203347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 2515585 - 2515658
Alignment:
Q  170 aatgttttgtttaattttaa-tctgaaccattgaatccttttttaccacatgtcattcatccaagaccctaaat 242  Q
    |||||||| |||| |||||| ||| ||||||||||||  ||||| ||| |||||||||||||||||||||||||    
T  2515585 aatgttttatttatttttaaatctcaaccattgaatctatttttcccatatgtcattcatccaagaccctaaat 2515658  T

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Target: scaffold0060 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 174 - 254
Target Start/End: Complemental strand, 11221 - 11140
Alignment:
Q  174 ttttgtttaattttaatctgaaccattgaatcctttttt-accacatgtcattcatccaagaccctaaatggggtaaatgga 254  Q
    ||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  11221 ttttgattatttttaatctgaaccattgaatcctttttttaccacatgtcattcatccatgaccctaaatggggtaaatgga 11140  T

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Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 171 - 275
Target Start/End: Complemental strand, 34374063 - 34373959
Alignment:
Q  171 atgttttgtttaattttaatctgaaccattgaatccttttttaccacatgtcattcatccaagaccctaaatggggtaaatggaactgatggtaaatgaa 270  Q
    ||||||| |||| ||||||||| |||||||||||| |||||| |||||||||||||||||||||  |||||| || |||||||||| ||||||||||| |    
T  34374063 atgttttatttatttttaatctaaaccattgaatcattttttgccacatgtcattcatccaagattctaaattggataaatggaaccgatggtaaatgga 34373964  T
Q  271 gcata 275  Q
    |||||    
T  34373963 gcata 34373959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 184 - 276
Target Start/End: Complemental strand, 12772576 - 12772484
Alignment:
Q  184 ttttaatctgaaccattgaatccttttttaccacatgtcattcatccaagaccctaaatggggtaaatggaactgatggtaaatgaagcatac 276  Q
    ||||||||| |||||| |||||||||||| ||||||||||||||| ||| ||| |||| || ||||||||| || |||||||||| |||||||    
T  12772576 ttttaatctaaaccatcgaatccttttttgccacatgtcattcatgcaataccataaacggagtaaatggatctaatggtaaatggagcatac 12772484  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 171 - 254
Target Start/End: Original strand, 34374788 - 34374870
Alignment:
Q  171 atgttttgtttaattttaatctgaaccattgaatccttttttaccacatgtcattcatccaagaccctaaatggggtaaatgga 254  Q
    |||||||||||| |||||||||||||||||||||  |||||| |||| ||||||||||| |||||  || ||||||||||||||    
T  34374788 atgttttgtttatttttaatctgaaccattgaat-atttttttccacgtgtcattcatctaagactttagatggggtaaatgga 34374870  T

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Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 171 - 284
Target Start/End: Original strand, 6356377 - 6356490
Alignment:
Q  171 atgttttgtttaattttaatctgaaccattgaatccttttttaccacatgtcattcatccaagaccctaaatggggtaaatggaactgatggtaaatgaa 270  Q
    |||||||| ||| ||| ||||||||| ||||||||  ||||||||||||||||||||||||||||| ||||||  |||||||| ||   ||||||||| |    
T  6356377 atgttttgattattttaaatctgaacaattgaatcgatttttaccacatgtcattcatccaagaccttaaatgtagtaaatgggacatgtggtaaatgga 6356476  T
Q  271 gcatacccaaactc 284  Q
    ||||||| ||||||    
T  6356477 gcatacctaaactc 6356490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 188 - 254
Target Start/End: Complemental strand, 12257398 - 12257332
Alignment:
Q  188 aatctgaaccattgaatccttttttaccacatgtcattcatccaagaccctaaatggggtaaatgga 254  Q
    ||||| |||||||||||| |||||| |||| |||| |||||||||||||||||||||  ||||||||    
T  12257398 aatctcaaccattgaatctttttttgccacttgtctttcatccaagaccctaaatggtctaaatgga 12257332  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 254
Target Start/End: Original strand, 12258017 - 12258083
Alignment:
Q  188 aatctgaaccattgaatccttttttaccacatgtcattcatccaagaccctaaatggggtaaatgga 254  Q
    ||||| ||||||| |||| |||||| |||| |||| ||||||||| |||||||||||  ||||||||    
T  12258017 aatctcaaccattaaatctttttttgccacttgtctttcatccaaaaccctaaatggtctaaatgga 12258083  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 254
Target Start/End: Original strand, 22748794 - 22748859
Alignment:
Q  188 aatctgaaccattgaatccttttttaccacatgtcattcatccaagaccctaaatggggtaaatgga 254  Q
    ||||| |||| ||| || ||||||||||||||||| ||||||||| | ||||||||| |||||||||    
T  22748794 aatcttaaccgttggatgcttttttaccacatgtctttcatccaa-atcctaaatggagtaaatgga 22748859  T

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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 184 - 254
Target Start/End: Complemental strand, 21632637 - 21632566
Alignment:
Q  184 ttttaatctgaaccattgaatccttt-tttaccacatgtcattcatccaagaccctaaatggggtaaatgga 254  Q
    ||||||||||||||||||||| |||| ||||||| |||||||||||||| ||||||||||||||||||||||    
T  21632637 ttttaatctgaaccattgaattctttatttaccagatgtcattcatccatgaccctaaatggggtaaatgga 21632566  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 184 - 254
Target Start/End: Complemental strand, 21640884 - 21640813
Alignment:
Q  184 ttttaatctgaaccattgaatccttt-tttaccacatgtcattcatccaagaccctaaatggggtaaatgga 254  Q
    ||||||||||||||||||||| |||| ||||||| |||||||||||||| ||||||||||||||||||||||    
T  21640884 ttttaatctgaaccattgaattctttatttaccagatgtcattcatccatgaccctaaatggggtaaatgga 21640813  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 188 - 278
Target Start/End: Complemental strand, 8740537 - 8740447
Alignment:
Q  188 aatctgaaccattgaatccttttttaccacatgtcattcatccaagaccctaaatggggtaaatggaactgatggtaaatgaagcataccc 278  Q
    ||||| |||||||||||  |||||  ||||||||||||||||||| ||||||||||||||||||||| |  |||||||||  |||||||||    
T  8740537 aatctcaaccattgaatgttttttggccacatgtcattcatccaataccctaaatggggtaaatggagcatatggtaaattgagcataccc 8740447  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 277
Target Start/End: Original strand, 8740574 - 8740637
Alignment:
Q  214 ccacatgtcattcatccaagaccctaaatggggtaaatggaactgatggtaaatgaagcatacc 277  Q
    ||||||||||||||||||||||| |||||||| |||||||| |  |||||||||||| ||||||    
T  8740574 ccacatgtcattcatccaagaccttaaatgggataaatggagcatatggtaaatgaaacatacc 8740637  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 179 - 278
Target Start/End: Original strand, 6596867 - 6596967
Alignment:
Q  179 tttaattttaa-tctgaaccattgaatccttttttaccacatgtcattcatccaagaccctaaatggggtaaatggaactgatggtaaatgaagcatacc 277  Q
    ||||||||||| ||| |||| ||||||  |||||  ||||||||||||||||||||||| |||||  |||||||||| |  |||||||| | ||||||||    
T  6596867 tttaattttaaatctcaacccttgaatattttttagccacatgtcattcatccaagaccttaaatatggtaaatggagcctatggtaaacggagcatacc 6596966  T
Q  278 c 278  Q
    |    
T  6596967 c 6596967  T

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Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 18259212 - 18259285
Alignment:
Q  170 aatgttttgtttaattttaa-tctgaaccattgaatccttttttaccacatgtcattcatccaagaccctaaat 242  Q
    ||||||||||||| |||||| | |||||||||||||| |||||| ||||||||||||||||||||| |||||||    
T  18259212 aatgttttgtttatttttaaatatgaaccattgaatctttttttgccacatgtcattcatccaagatcctaaat 18259285  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 170 - 242
Target Start/End: Complemental strand, 10257817 - 10257744
Alignment:
Q  170 aatgttttgtttaattttaa-tctgaaccattgaatccttttttaccacatgtcattcatccaagaccctaaat 242  Q
    ||||||||||||| |||||| ||||||||||| |||  |||||| |||||||||||||||| ||||||||||||    
T  10257817 aatgttttgtttatttttaaatctgaaccatttaattattttttgccacatgtcattcatctaagaccctaaat 10257744  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 170 - 243
Target Start/End: Original strand, 33669536 - 33669610
Alignment:
Q  170 aatgttttgtttaattttaa-tctgaaccattgaatccttttttaccacatgtcattcatccaagaccctaaatg 243  Q
    ||||||||||||| ||| || | ||||||||||||| ||||||| |||||||||||||||  |||||||||||||    
T  33669536 aatgttttgtttattttaaaatatgaaccattgaattcttttttgccacatgtcattcatttaagaccctaaatg 33669610  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 170 - 254
Target Start/End: Original strand, 34227227 - 34227310
Alignment:
Q  170 aatgttttgtttaattttaatctgaaccattgaatccttttttaccacatgtcattcatccaagaccctaaatggggtaaatgga 254  Q
    |||||||||||   ||| ||||||||||||||| |  |||||||||||||||||||||||||||  |||||||||  ||||||||    
T  34227227 aatgttttgttgcttttaaatctgaaccattgattttttttttaccacatgtcattcatccaag-tcctaaatggactaaatgga 34227310  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 170 - 256
Target Start/End: Complemental strand, 34227039 - 34226952
Alignment:
Q  170 aatgttttgtttaattttaa-tctgaaccattgaatccttttttaccacatgtcattcatccaagaccctaaatggggtaaatggaac 256  Q
    ||||||||||||| ||| || | ||||||||| ||| ||||||||||| ||||||||||| ||||  ||||||||   ||||||||||    
T  34227039 aatgttttgtttattttaaaatttgaaccattaaattcttttttaccatatgtcattcattcaaggtcctaaatgaactaaatggaac 34226952  T

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