View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19381_low_28 (Length: 304)
Name: NF19381_low_28
Description: NF19381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19381_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 17 - 287
Target Start/End: Complemental strand, 21537840 - 21537570
Alignment:
| Q |
17 |
atccatgttgtgctcaaagacttgatgatgattaatataacccttaaatgcacccttaaaactgaatgacctcacatatgcagcagatatctgaactctt |
116 |
Q |
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| T |
21537840 |
atccatgttgtgctcaaagacttgatgatgattaatataacccttaaacgcacccttaaaactgaatgacctcacatatggagcagatatctgaactctt |
21537741 |
T |
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| Q |
117 |
gaatgttgatacataattgttagactagaaagtgtatcaccagatataacaagtattttgtcatctccacttactttgcaatcgtcgacgactaaagtac |
216 |
Q |
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| T |
21537740 |
gaatgttgatacataattgttagactagaaagtatatcaccggatataacaagtattttgtcatctccacttactttgcaatcgtcgacgactaaagtac |
21537641 |
T |
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| Q |
217 |
taagcttcttacattttaagaaaggcgtagcataatctttgccatcagccaaagtaaatgtaacatgtctt |
287 |
Q |
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| T |
21537640 |
taagcttcttacattttaagaaaggcatagcataatctttgtcattagccaaagtaaatgtaacatgtctt |
21537570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 123 - 287
Target Start/End: Complemental strand, 21522013 - 21521849
Alignment:
| Q |
123 |
tgatacataattgttagactagaaagtgtatcaccagatataacaagtattttgtcatctccacttactttgcaatcgtcgacgactaaagtactaagct |
222 |
Q |
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|||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
21522013 |
tgatacatgattgttagactggaaaatgtatcaccagatataacaagtattttgtcatctccaattactttgcaatcgtcgatgactaaagtactaagct |
21521914 |
T |
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| Q |
223 |
tcttacattttaagaaaggcgtagcataatctttgccatcagccaaagtaaatgtaacatgtctt |
287 |
Q |
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| T |
21521913 |
tcttacattttaagaaaggcgtagcataatctttgccatcagccaaagtaaatgtaacatgtctt |
21521849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 130 - 248
Target Start/End: Original strand, 20426330 - 20426448
Alignment:
| Q |
130 |
taattgttagactagaaagtgtatcaccagatataacaagtattttgtcatctccacttactttgcaatcgtcgacgactaaagtactaagcttcttaca |
229 |
Q |
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|||| ||||| ||||||||| |||||||||||||| ||| ||||||||||||| ||| |||| ||| || | || ||||||||||| ||||||||| |
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| T |
20426330 |
taatagttaggctagaaagtctatcaccagatatacaaagaattttgtcatctctgattaatttgaaattctcaatgaataaagtactaaacttcttaca |
20426429 |
T |
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| Q |
230 |
ttttaagaaaggcgtagca |
248 |
Q |
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||||||||||||| ||||| |
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| T |
20426430 |
ttttaagaaaggcttagca |
20426448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 209 - 287
Target Start/End: Complemental strand, 20427630 - 20427552
Alignment:
| Q |
209 |
taaagtactaagcttcttacattttaagaaaggcgtagcataatctttgccatcagccaaagtaaatgtaacatgtctt |
287 |
Q |
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||||||| |||||||||||||||| ||||||||| ||||| || | |||| |||| ||||||||| |||||||| |||| |
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| T |
20427630 |
taaagtattaagcttcttacatttcaagaaaggcttagcacaaccattgctatcatccaaagtaattgtaacatttctt |
20427552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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