View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19381_low_30 (Length: 294)

Name: NF19381_low_30
Description: NF19381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19381_low_30
NF19381_low_30
[»] chr4 (4 HSPs)
chr4 (1-177)||(22022333-22022511)
chr4 (238-278)||(22022297-22022337)
chr4 (174-217)||(16499114-16499157)
chr4 (160-209)||(35368336-35368385)
[»] chr2 (3 HSPs)
chr2 (162-217)||(25332393-25332448)
chr2 (157-218)||(25331915-25331976)
chr2 (157-217)||(17768412-17768472)
[»] chr3 (2 HSPs)
chr3 (157-218)||(32998933-32998994)
chr3 (166-218)||(49976884-49976936)
[»] scaffold0421 (1 HSPs)
scaffold0421 (173-218)||(7286-7331)
[»] chr8 (4 HSPs)
chr8 (173-218)||(13544547-13544592)
chr8 (173-218)||(13545201-13545246)
chr8 (173-218)||(13679227-13679272)
chr8 (173-218)||(13679881-13679926)
[»] chr6 (1 HSPs)
chr6 (173-218)||(33771447-33771492)
[»] chr5 (1 HSPs)
chr5 (157-217)||(41696071-41696131)


Alignment Details
Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 22022511 - 22022333
Alignment:
Q  1 cccatgatccttaggttt--cacgattatcgattttgttatgagaggttgaaatatggtatgtcaatttgtgtttaagaccatcccttgtgatgtgtaac 98  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22022511 cccatgatccttaggtttttcacgattatcgattttgttatgagaggttgaaatatggtatgtcaatttgtgtttaagaccatcccttgtgatgtgtaac 22022412  T
Q  99 ttttgtgttaaattgcataatataaatgtgttgatgatatatgttgtttgttgcttgagtccaattcttatttagtgtg 177  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22022411 ttttgtgttaaattgcataatataaatgtgttgatgatatatgttgtttgttgcttgagtccaattcttatttagtgtg 22022333  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 238 - 278
Target Start/End: Complemental strand, 22022337 - 22022297
Alignment:
Q  238 gtgtgatgtttgttgaattgatacatcttcatgtatgttag 278  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  22022337 gtgtgatgtttgttgaattgatacatcttcatgtatgttag 22022297  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 16499157 - 16499114
Alignment:
Q  174 tgtgttaaaagagagtgtcggtgggtgtgaccctaggatttctc 217  Q
    ||||||||||||||||||  |||||||||||||||| |||||||    
T  16499157 tgtgttaaaagagagtgttagtgggtgtgaccctagcatttctc 16499114  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 35368385 - 35368336
Alignment:
Q  160 caattcttatttagtgtgttaaaagagagtgtcggtgggtgtgaccctag 209  Q
    ||||| |||||| ||||||||||||| |||||| |||| |||||||||||    
T  35368385 caatttttatttggtgtgttaaaagaaagtgtcagtggatgtgaccctag 35368336  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 217
Target Start/End: Original strand, 25332393 - 25332448
Alignment:
Q  162 attcttatttagtgtgttaaaagagagtgtcggtgggtgtgaccctaggatttctc 217  Q
    ||||||||||||||||||||||||||||||  |||||||||| ||||| |||||||    
T  25332393 attcttatttagtgtgttaaaagagagtgttcgtgggtgtgatcctagcatttctc 25332448  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 25331976 - 25331915
Alignment:
Q  157 gtccaattcttatttagtgtgttaaaagagagtgtcggtgggtgtgaccctaggatttctct 218  Q
    |||||||| |||||  ||||| |||||||||||||  |||||||||||||||| ||||||||    
T  25331976 gtccaatttttattgggtgtgctaaaagagagtgttagtgggtgtgaccctagcatttctct 25331915  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 17768472 - 17768412
Alignment:
Q  157 gtccaattcttatttagtgtgttaaaagagagtgtcggtgggtgtgaccctaggatttctc 217  Q
    |||||| |||||||| |||||||||||||||||||  |||| ||| ||||||| |||||||    
T  17768472 gtccaactcttatttggtgtgttaaaagagagtgttagtggatgtcaccctagtatttctc 17768412  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 32998994 - 32998933
Alignment:
Q  157 gtccaattcttatttagtgtgttaaaagagagtgtcggtgggtgtgaccctaggatttctct 218  Q
    |||||||| |||||| ||||||||||||||||||   |||||||||||||||| ||||||||    
T  32998994 gtccaatttttatttggtgtgttaaaagagagtgctagtgggtgtgaccctagcatttctct 32998933  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 49976936 - 49976884
Alignment:
Q  166 ttatttagtgtgttaaaagagagtgtcggtgggtgtgaccctaggatttctct 218  Q
    ||||| ||||||||||||||| ||||  ||||||||||| |||| ||||||||    
T  49976936 ttattgagtgtgttaaaagagtgtgttagtgggtgtgacactagcatttctct 49976884  T

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Target: scaffold0421 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0421
Description:

Target: scaffold0421; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 7286 - 7331
Alignment:
Q  173 gtgtgttaaaagagagtgtcggtgggtgtgaccctaggatttctct 218  Q
    |||||||||||||||||||  |||| ||||||||||| ||||||||    
T  7286 gtgtgttaaaagagagtgttagtggatgtgaccctagcatttctct 7331  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 13544592 - 13544547
Alignment:
Q  173 gtgtgttaaaagagagtgtcggtgggtgtgaccctaggatttctct 218  Q
    |||||||||||||||||||  |||||||||| ||||| ||||||||    
T  13544592 gtgtgttaaaagagagtgttagtgggtgtgagcctagcatttctct 13544547  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 13545201 - 13545246
Alignment:
Q  173 gtgtgttaaaagagagtgtcggtgggtgtgaccctaggatttctct 218  Q
    |||||||||||||||||||  ||||||||||| |||| ||||||||    
T  13545201 gtgtgttaaaagagagtgtaagtgggtgtgactctagcatttctct 13545246  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 13679272 - 13679227
Alignment:
Q  173 gtgtgttaaaagagagtgtcggtgggtgtgaccctaggatttctct 218  Q
    |||||||||||||||||||  ||||||||||| |||| ||||||||    
T  13679272 gtgtgttaaaagagagtgtaagtgggtgtgactctagcatttctct 13679227  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 13679881 - 13679926
Alignment:
Q  173 gtgtgttaaaagagagtgtcggtgggtgtgaccctaggatttctct 218  Q
    |||||||||||||||||||  |||||||||| ||||| ||||||||    
T  13679881 gtgtgttaaaagagagtgttagtgggtgtgagcctagcatttctct 13679926  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 33771447 - 33771492
Alignment:
Q  173 gtgtgttaaaagagagtgtcggtgggtgtgaccctaggatttctct 218  Q
    |||||||||||||| ||||  |||||||||||||||| ||||||||    
T  33771447 gtgtgttaaaagagtgtgttagtgggtgtgaccctagcatttctct 33771492  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 41696131 - 41696071
Alignment:
Q  157 gtccaattcttatttagtgtgttaaaagagagtgtcggtgggtgtgaccctaggatttctc 217  Q
    |||||||||| |||| |||||||||||||||||||  |||| || || ||||| |||||||    
T  41696131 gtccaattctgatttggtgtgttaaaagagagtgttagtggctgcgatcctagcatttctc 41696071  T

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