View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19381_low_31 (Length: 277)
Name: NF19381_low_31
Description: NF19381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19381_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 11686585 - 11686835
Alignment:
| Q |
18 |
cacctctctccataatgcagagaatctttcctttgatatcggacagccaaaatgcagtttcacatcatctaaactttccaaaaatgctcttggtcttgga |
117 |
Q |
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| T |
11686585 |
cacctctctccataatgcagagaatctttcctttgagatctgacagccaaaatgcagtttcacatcatctaaactttccaaaaatgctcttggtcttgga |
11686684 |
T |
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| Q |
118 |
tcaatatctctttccatttcccgaacttttaaatcgtagcccccgtaccgccatgttggcaaacttatattagacaaggtcatcatatacgtagcatgtt |
217 |
Q |
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| T |
11686685 |
ttaatatctctttccatttcccgaacttttaaatcgtagcccccataccgccatgttggcaaacttatgttagacaaggtcatcatatacgtagcatgtt |
11686784 |
T |
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| Q |
218 |
tagcagtagtgaattgaataattgcaaatgctcttcgaacatggcctttgc |
268 |
Q |
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| T |
11686785 |
tagcagtggtgaattgaataattgcaaatgctcttcgaacatggcctttgc |
11686835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 11690597 - 11690847
Alignment:
| Q |
18 |
cacctctctccataatgcagagaatctttcctttgatatcggacagccaaaatgcagtttcacatcatctaaactttccaaaaatgctcttggtcttgga |
117 |
Q |
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| T |
11690597 |
cacctctctccataatgcagagaatctttcctttgagatctgacagccaaaatgcagtttcacatcatctaaactttccaaaaatgctcttggtcttgga |
11690696 |
T |
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| Q |
118 |
tcaatatctctttccatttcccgaacttttaaatcgtagcccccgtaccgccatgttggcaaacttatattagacaaggtcatcatatacgtagcatgtt |
217 |
Q |
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| T |
11690697 |
ttaatatctctttccatttcccgaacttttaaatcgtagcccccgtaccgccatgttggcaaacttatgttagacaaggtcatcatatatgtagcatgtt |
11690796 |
T |
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| Q |
218 |
tagcagtagtgaattgaataattgcaaatgctcttcgaacatggcctttgc |
268 |
Q |
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| T |
11690797 |
tagcagtagtgaattgaataattgcaaatgttcttcgaacatggcctttgc |
11690847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 26 - 252
Target Start/End: Complemental strand, 11635211 - 11634991
Alignment:
| Q |
26 |
tccataatgcagagaatctttcctttgatatcggacagccaaaatgcagtttcacatcatctaaactttccaaaaatgctcttggtcttggatcaatatc |
125 |
Q |
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| T |
11635211 |
tccataatttagagaatctttcctttgagatctgacagccaaaatacagtttaacatcgtctaaactgtccaagaatgcccttggctttggatcaatatc |
11635112 |
T |
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| Q |
126 |
tctttccatttcccgaacttttaaatcgtagcccccgtaccgccatgttggcaaacttatattagacaaggtcatcatatacgtagcatgtttagcagta |
225 |
Q |
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| T |
11635111 |
tctttccaattccctaacttttaaataggagtctccgaaccgcaattttg------ttctgctaggtaaggccatcatgaatgtagcatgttttgcagta |
11635018 |
T |
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| Q |
226 |
gtgaattgaataattgcaaatgctctt |
252 |
Q |
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| T |
11635017 |
gtgaactgaataattgcaaatgctctt |
11634991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 11627437 - 11627199
Alignment:
| Q |
18 |
cacctctctccataatgcagagaatctttcctttgatatcggacagccaaaatgcagtttcacatcatctaaactttccaaaaatgctcttggtcttgga |
117 |
Q |
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||||||||||||||| |||| |||||||||| ||| || |||||| ||||| |||||||||||||| ||||| | ||||| | | ||||| ||| || |
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| T |
11627437 |
cacctctctccataaaacagataatctttcctctgagatttgacagcaaaaatacagtttcacatcattcaaactgtgcaaaatttcccttggccttcga |
11627338 |
T |
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| Q |
118 |
tcaatatctctttccatttcccgaacttttaaatcgtagcccccgtaccgccatgttggcaaacttatattagacaaggtcatcatatacgtagcatgtt |
217 |
Q |
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| T |
11627337 |
acaatatctctttccatttcccgaacttttaaataggagctcccgtactgcaatggtgacaaacttctgctaggtaaggccatcatatctgtaacatgat |
11627238 |
T |
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| Q |
218 |
tagcagtagtgaattgaataattgcaaatgctcttcgaa |
256 |
Q |
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| T |
11627237 |
ctttagtagtgaattggataattgcaaatgctgttcgaa |
11627199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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