View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19381_low_32 (Length: 273)
Name: NF19381_low_32
Description: NF19381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19381_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 3668941 - 3668691
Alignment:
| Q |
1 |
cacaatgtttgtgttagaatattagaaaatatcttataatatctttatattatatagtagcatttaagtttatctcgcacgtcaatttattagaagacaa |
100 |
Q |
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| T |
3668941 |
cacaatgtttgtgttagaatattagaaaatatcttataatatctttatatcatattgtagcatttaagtttatctcgcatgtcaatttattagaagacaa |
3668842 |
T |
|
| Q |
101 |
gtcaatagaacggttcatgttcttgcaataatggatacatttttaacttggattcatattttatagatattataactcgtatccaacatattatcgttaa |
200 |
Q |
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||||||||||||||||||||||||| ||||||||| |||||||||| | |||| | ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3668841 |
gtcaatagaacggttcatgttcttgtaataatggacacatttttaattcagatttacattttatagatattataactcgtgtccaacatattatcgttaa |
3668742 |
T |
|
| Q |
201 |
tgaaatgcaatcaa-----ctcgctcaaaataataatattaaaaaatatag |
246 |
Q |
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||||||||||| || || ||||||||||||||||||||||||||||| |
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|
| T |
3668741 |
tgaaatgcaataaacatgtcttgctcaaaataataatattaaaaaatatag |
3668691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 12410897 - 12410855
Alignment:
| Q |
11 |
gtgttagaatattagaaaatatcttataatatctttatattat |
53 |
Q |
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| T |
12410897 |
gtgttagaatattagaaaataccttatactatctttatattat |
12410855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 44701657 - 44701616
Alignment:
| Q |
12 |
tgttagaatattagaaaatatcttataatatctttatattat |
53 |
Q |
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|
| T |
44701657 |
tgttagaatataagaaaatatcttataatatcttgatattat |
44701616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 52623360 - 52623328
Alignment:
| Q |
12 |
tgttagaatattagaaaatatcttataatatct |
44 |
Q |
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||||||||||||||||||||||||||||||||| |
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|
| T |
52623360 |
tgttagaatattagaaaatatcttataatatct |
52623328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 45
Target Start/End: Complemental strand, 35488086 - 35488052
Alignment:
| Q |
11 |
gtgttagaatattagaaaatatcttataatatctt |
45 |
Q |
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||||| ||||||||||||||||||||||||||||| |
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|
| T |
35488086 |
gtgttggaatattagaaaatatcttataatatctt |
35488052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 22853424 - 22853385
Alignment:
| Q |
11 |
gtgttagaatattagaaaatatcttataatatctttatat |
50 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||||| |
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|
| T |
22853424 |
gtgttagaatattagaatatatcttataatatccttatat |
22853385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 44
Target Start/End: Original strand, 22127267 - 22127299
Alignment:
| Q |
12 |
tgttagaatattagaaaatatcttataatatct |
44 |
Q |
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||||||||||||| ||||||||||||||||||| |
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|
| T |
22127267 |
tgttagaatattataaaatatcttataatatct |
22127299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 43
Target Start/End: Complemental strand, 5259230 - 5259200
Alignment:
| Q |
13 |
gttagaatattagaaaatatcttataatatc |
43 |
Q |
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||||||||||||||||||||||||||||||| |
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|
| T |
5259230 |
gttagaatattagaaaatatcttataatatc |
5259200 |
T |
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