View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19381_low_35 (Length: 260)

Name: NF19381_low_35
Description: NF19381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19381_low_35
NF19381_low_35
[»] chr6 (31 HSPs)
chr6 (34-243)||(5165535-5165744)
chr6 (39-243)||(25941955-25942158)
chr6 (41-243)||(17694543-17694744)
chr6 (34-236)||(13879019-13879221)
chr6 (52-243)||(22351546-22351737)
chr6 (8-200)||(26068121-26068310)
chr6 (70-200)||(30443739-30443868)
chr6 (1-200)||(3631669-3631867)
chr6 (10-200)||(33309257-33309443)
chr6 (1-199)||(17012419-17012615)
chr6 (8-200)||(15540876-15541066)
chr6 (41-200)||(25465331-25465486)
chr6 (39-86)||(19701756-19701803)
chr6 (41-196)||(3394794-3394947)
chr6 (1-200)||(26932289-26932485)
chr6 (31-85)||(13467318-13467372)
chr6 (141-200)||(5408752-5408811)
chr6 (141-200)||(5413077-5413136)
chr6 (34-85)||(13883755-13883806)
chr6 (141-200)||(16555311-16555370)
chr6 (141-200)||(16578185-16578244)
chr6 (141-200)||(16617136-16617195)
chr6 (141-200)||(16631867-16631926)
chr6 (1-88)||(24338292-24338378)
chr6 (73-107)||(17758390-17758424)
chr6 (74-107)||(16555242-16555275)
chr6 (74-107)||(16578280-16578313)
chr6 (74-107)||(16617067-16617100)
chr6 (74-107)||(16631798-16631831)
chr6 (73-110)||(18232630-18232667)
chr6 (34-86)||(33216108-33216160)
[»] chr7 (32 HSPs)
chr7 (34-243)||(25351633-25351841)
chr7 (34-243)||(44016357-44016565)
chr7 (34-243)||(7070077-7070284)
chr7 (34-236)||(25405695-25405896)
chr7 (34-236)||(3324486-3324688)
chr7 (41-179)||(25357334-25357472)
chr7 (1-200)||(24748951-24749149)
chr7 (1-200)||(7351377-7351574)
chr7 (1-200)||(44724939-44725137)
chr7 (73-200)||(21678494-21678620)
chr7 (73-200)||(28486001-28486127)
chr7 (41-200)||(7094187-7094343)
chr7 (1-200)||(38394352-38394548)
chr7 (73-200)||(1049015-1049141)
chr7 (73-200)||(40550265-40550392)
chr7 (1-200)||(7471707-7471903)
chr7 (1-200)||(20297728-20297923)
chr7 (1-166)||(7188895-7189059)
chr7 (141-243)||(12405973-12406075)
chr7 (141-243)||(18413294-18413396)
chr7 (34-86)||(44512362-44512414)
chr7 (141-200)||(22135306-22135365)
chr7 (81-200)||(31159414-31159532)
chr7 (73-109)||(9185437-9185473)
chr7 (34-85)||(30247252-30247303)
chr7 (141-200)||(48489857-48489916)
chr7 (73-110)||(3047038-3047075)
chr7 (75-200)||(6046921-6047046)
chr7 (39-88)||(42006946-42006995)
chr7 (73-106)||(49091451-49091484)
chr7 (34-86)||(7464364-7464415)
chr7 (40-88)||(44010600-44010648)
[»] chr4 (45 HSPs)
chr4 (34-243)||(4558588-4558797)
chr4 (34-242)||(15312598-15312806)
chr4 (70-204)||(16631496-16631630)
chr4 (1-200)||(14789159-14789356)
chr4 (1-200)||(18409078-18409276)
chr4 (1-200)||(47563164-47563362)
chr4 (1-200)||(22802463-22802660)
chr4 (25-200)||(18311101-18311275)
chr4 (1-200)||(11008294-11008490)
chr4 (1-200)||(16453713-16453910)
chr4 (75-200)||(11435438-11435562)
chr4 (74-201)||(26558068-26558195)
chr4 (1-200)||(9176201-9176396)
chr4 (76-200)||(22134343-22134466)
chr4 (73-200)||(16933874-16934000)
chr4 (70-200)||(10113336-10113465)
chr4 (73-200)||(18537211-18537337)
chr4 (73-200)||(22782463-22782589)
chr4 (41-200)||(36921224-36921381)
chr4 (1-115)||(22046496-22046609)
chr4 (8-164)||(12395612-12395766)
chr4 (8-164)||(12400574-12400728)
chr4 (25-85)||(47275153-47275212)
chr4 (141-200)||(12743611-12743670)
chr4 (39-85)||(36771679-36771725)
chr4 (1-67)||(41997892-41997958)
chr4 (39-80)||(36769762-36769803)
chr4 (141-200)||(5872241-5872300)
chr4 (141-200)||(8393845-8393904)
chr4 (41-88)||(11853853-11853900)
chr4 (141-200)||(16624354-16624413)
chr4 (141-200)||(52095045-52095104)
chr4 (146-200)||(22046441-22046495)
chr4 (40-86)||(47566776-47566822)
chr4 (71-196)||(3578421-3578546)
chr4 (73-110)||(4588308-4588345)
chr4 (34-86)||(7050124-7050174)
chr4 (73-106)||(12743707-12743740)
chr4 (40-85)||(15317245-15317290)
chr4 (34-86)||(4885152-4885203)
chr4 (34-86)||(8529550-8529601)
chr4 (74-106)||(16624286-16624318)
chr4 (203-243)||(16632939-16632979)
chr4 (34-86)||(16688793-16688844)
chr4 (34-86)||(18587248-18587299)
[»] chr1 (32 HSPs)
chr1 (34-243)||(9522006-9522214)
chr1 (39-243)||(2400916-2401118)
chr1 (74-242)||(14997357-14997525)
chr1 (41-200)||(27338859-27339018)
chr1 (1-200)||(50078520-50078719)
chr1 (1-200)||(16429304-16429501)
chr1 (73-200)||(16226595-16226721)
chr1 (8-200)||(31424748-31424938)
chr1 (25-115)||(28206882-28206971)
chr1 (1-162)||(25251045-25251204)
chr1 (1-200)||(14183342-14183537)
chr1 (25-200)||(28997981-28998153)
chr1 (25-200)||(29003697-29003869)
chr1 (73-200)||(47177789-47177915)
chr1 (141-200)||(28223104-28223163)
chr1 (73-200)||(51757961-51758087)
chr1 (10-166)||(20291822-20291974)
chr1 (42-129)||(13426753-13426838)
chr1 (75-165)||(13785025-13785117)
chr1 (141-200)||(47099168-47099227)
chr1 (141-200)||(51750531-51750590)
chr1 (142-200)||(28205554-28205612)
chr1 (85-165)||(13127496-13127575)
chr1 (1-85)||(13215435-13215518)
chr1 (73-200)||(8348791-8348917)
chr1 (141-200)||(19359187-19359246)
chr1 (141-200)||(31657630-31657689)
chr1 (41-87)||(25860250-25860296)
chr1 (25-87)||(38925326-38925387)
chr1 (34-87)||(21353195-21353248)
chr1 (41-85)||(27336782-27336827)
chr1 (73-110)||(28223196-28223233)
[»] scaffold0209 (1 HSPs)
scaffold0209 (39-243)||(16727-16930)
[»] chr3 (49 HSPs)
chr3 (39-243)||(10897291-10897494)
chr3 (34-243)||(47882580-47882787)
chr3 (41-243)||(29913647-29913848)
chr3 (41-243)||(22625671-22625872)
chr3 (34-243)||(10612469-10612677)
chr3 (74-243)||(16457787-16457955)
chr3 (71-243)||(54188827-54188999)
chr3 (34-236)||(6303592-6303793)
chr3 (34-236)||(10099773-10099974)
chr3 (78-236)||(10205390-10205548)
chr3 (10-200)||(6065519-6065706)
chr3 (41-200)||(18098896-18099053)
chr3 (1-200)||(53917392-53917589)
chr3 (1-200)||(10958049-10958244)
chr3 (40-172)||(27761753-27761884)
chr3 (10-196)||(3315026-3315210)
chr3 (73-199)||(25634282-25634407)
chr3 (1-200)||(42990635-42990831)
chr3 (8-200)||(43226420-43226609)
chr3 (73-200)||(5886606-5886732)
chr3 (1-200)||(43423194-43423391)
chr3 (10-200)||(10621252-10621439)
chr3 (8-200)||(456251-456439)
chr3 (73-200)||(11168507-11168633)
chr3 (1-200)||(5191987-5192182)
chr3 (34-85)||(3330170-3330221)
chr3 (73-200)||(23633850-23633976)
chr3 (42-162)||(1620235-1620353)
chr3 (39-87)||(20031168-20031216)
chr3 (74-162)||(27421044-27421132)
chr3 (140-228)||(53597698-53597786)
chr3 (72-111)||(3323826-3323865)
chr3 (141-200)||(6716939-6716998)
chr3 (141-200)||(9635806-9635865)
chr3 (141-200)||(29811295-29811354)
chr3 (141-200)||(37407115-37407174)
chr3 (10-96)||(28101837-28101922)
chr3 (74-107)||(6716870-6716903)
chr3 (84-161)||(7768977-7769054)
chr3 (34-86)||(11079796-11079846)
chr3 (39-84)||(13893745-13893789)
chr3 (41-86)||(29897526-29897571)
chr3 (73-110)||(32891446-32891483)
chr3 (73-106)||(37407045-37407078)
chr3 (74-107)||(43403508-43403541)
chr3 (141-193)||(7762693-7762745)
chr3 (74-106)||(9635902-9635934)
chr3 (34-85)||(10949115-10949164)
chr3 (73-105)||(29811225-29811257)
[»] chr2 (30 HSPs)
chr2 (40-243)||(22716925-22717126)
chr2 (34-243)||(20054452-20054662)
chr2 (39-243)||(2736492-2736694)
chr2 (34-236)||(39680326-39680528)
chr2 (71-243)||(10942205-10942377)
chr2 (71-243)||(10948074-10948246)
chr2 (52-204)||(28458574-28458726)
chr2 (71-173)||(34574902-34575004)
chr2 (1-86)||(37962790-37962874)
chr2 (25-200)||(21520420-21520593)
chr2 (41-200)||(22405656-22405813)
chr2 (73-200)||(36560867-36560993)
chr2 (76-200)||(35217696-35217819)
chr2 (34-85)||(17943816-17943867)
chr2 (27-201)||(6263879-6264050)
chr2 (141-243)||(10445789-10445891)
chr2 (141-243)||(25403286-25403388)
chr2 (71-200)||(28570139-28570268)
chr2 (34-87)||(37170605-37170657)
chr2 (10-86)||(42923350-42923425)
chr2 (141-200)||(19504062-19504121)
chr2 (200-243)||(28457195-28457238)
chr2 (73-106)||(11690844-11690877)
chr2 (127-200)||(16388142-16388215)
chr2 (41-86)||(42923292-42923336)
chr2 (141-193)||(723437-723489)
chr2 (73-109)||(10445720-10445756)
chr2 (1-85)||(17849444-17849528)
chr2 (73-105)||(19504158-19504190)
chr2 (1-85)||(22874436-22874519)
[»] chr8 (27 HSPs)
chr8 (40-243)||(28891052-28891253)
chr8 (34-236)||(28328188-28328390)
chr8 (34-236)||(16756959-16757161)
chr8 (34-243)||(21034148-21034357)
chr8 (70-243)||(15944972-15945145)
chr8 (52-226)||(4823410-4823584)
chr8 (77-243)||(33032964-33033130)
chr8 (52-243)||(30423508-30423701)
chr8 (27-200)||(21480933-21481104)
chr8 (1-197)||(14418924-14419118)
chr8 (1-200)||(27827397-27827593)
chr8 (76-200)||(43080087-43080210)
chr8 (73-200)||(18811190-18811316)
chr8 (75-200)||(13985553-13985678)
chr8 (1-78)||(36865946-36866023)
chr8 (8-200)||(41383078-41383268)
chr8 (1-88)||(2467976-2468061)
chr8 (141-200)||(15069116-15069175)
chr8 (34-85)||(26268084-26268135)
chr8 (1-85)||(15185564-15185647)
chr8 (141-200)||(34256189-34256248)
chr8 (1-107)||(15068389-15068494)
chr8 (72-110)||(23799850-23799888)
chr8 (73-106)||(4732014-4732047)
chr8 (42-86)||(17799277-17799320)
chr8 (34-85)||(23179410-23179459)
chr8 (1-69)||(31162617-31162685)
[»] chr5 (35 HSPs)
chr5 (34-243)||(28786680-28786888)
chr5 (74-243)||(25445807-25445976)
chr5 (34-243)||(10627644-10627848)
chr5 (70-243)||(31782153-31782326)
chr5 (73-201)||(27910860-27910986)
chr5 (41-200)||(6745464-6745621)
chr5 (73-200)||(15356575-15356702)
chr5 (73-200)||(23665472-23665599)
chr5 (73-200)||(23792988-23793115)
chr5 (73-200)||(10750125-10750251)
chr5 (31-85)||(16093144-16093199)
chr5 (1-200)||(18467040-18467237)
chr5 (76-200)||(31543163-31543286)
chr5 (25-200)||(20043365-20043538)
chr5 (41-107)||(20505665-20505730)
chr5 (1-87)||(36208924-36209009)
chr5 (40-85)||(11962287-11962332)
chr5 (75-200)||(34479145-34479269)
chr5 (1-105)||(18511036-18511139)
chr5 (41-85)||(20437205-20437249)
chr5 (141-200)||(534185-534244)
chr5 (141-200)||(25805955-25806014)
chr5 (141-200)||(27449501-27449560)
chr5 (141-200)||(43598415-43598474)
chr5 (141-200)||(43603907-43603966)
chr5 (141-200)||(43609399-43609458)
chr5 (1-115)||(25804380-25804493)
chr5 (73-106)||(534115-534148)
chr5 (73-110)||(13695470-13695507)
chr5 (73-106)||(31397274-31397307)
chr5 (74-106)||(9789000-9789032)
chr5 (1-61)||(10474191-10474251)
chr5 (136-200)||(26171188-26171252)
chr5 (74-106)||(29720732-29720764)
chr5 (34-86)||(42238538-42238589)
[»] scaffold0256 (1 HSPs)
scaffold0256 (34-238)||(16608-16809)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-200)||(50374-50571)
[»] scaffold1899 (1 HSPs)
scaffold1899 (75-200)||(53-177)
[»] scaffold0004 (1 HSPs)
scaffold0004 (41-197)||(80262-80416)
[»] scaffold0127 (1 HSPs)
scaffold0127 (73-200)||(12601-12727)
[»] scaffold0140 (1 HSPs)
scaffold0140 (73-200)||(22552-22679)
[»] scaffold1674 (1 HSPs)
scaffold1674 (73-200)||(1178-1304)
[»] scaffold0006 (2 HSPs)
scaffold0006 (141-243)||(2143-2245)
scaffold0006 (76-110)||(2277-2311)
[»] scaffold0339 (1 HSPs)
scaffold0339 (25-85)||(4378-4437)
[»] scaffold0087 (2 HSPs)
scaffold0087 (141-243)||(37176-37278)
scaffold0087 (74-106)||(37108-37140)
[»] scaffold0016 (1 HSPs)
scaffold0016 (141-200)||(115029-115088)
[»] scaffold1050 (1 HSPs)
scaffold1050 (34-86)||(2918-2969)
[»] scaffold0491 (1 HSPs)
scaffold0491 (74-106)||(10939-10971)


Alignment Details
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 34 - 243
Target Start/End: Complemental strand, 5165744 - 5165535
Alignment:
Q  34 ctcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcat 133  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||    
T  5165744 ctccacgcatcaagtttattattggtgtgtttttcacaacgaattcacgacaattggcgcccagcgtggggcaaaggtcaaatcaataaacaggtattat 5165645  T
Q  134 aagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaataaaagtgtgttgaa 233  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5165644 aagtttgaagtgggacattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaacaaaagtgtgttgaa 5165545  T
Q  234 gcattgaagg 243  Q
    ||||||||||    
T  5165544 gcattgaagg 5165535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 39 - 243
Target Start/End: Original strand, 25941955 - 25942158
Alignment:
Q  39 cgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtt 138  Q
    |||||||||||| |||||| |||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||  |||    
T  25941955 cgcatcaagttt-ttattggtgtggttttctcaacgaattcacaacaattggcgcccaccgtggggcaaaggtcaaatcaataaccaggtatcatgggtt 25942053  T
Q  139 tgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaataaaagtgtgttgaagcatt 238  Q
     ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  25942054 cgaagtgggatattgaaaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattctaattcaacaaaagtgtgttgaagcatt 25942153  T
Q  239 gaagg 243  Q
    |||||    
T  25942154 gaagg 25942158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 41 - 243
Target Start/End: Complemental strand, 17694744 - 17694543
Alignment:
Q  41 catcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttg 140  Q
    |||||||||| |||||| |||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||  ||| |    
T  17694744 catcaagttt-ttattggtgtggttttctcaacgaattcacaacaattggcgcccaccgtggggcaaaggtcaaatcaataaccaggtatcatgggttcg 17694646  T
Q  141 aagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaataaaagtgtgttgaagcattga 240  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  17694645 aagtgggatattgaaaagtttaccggtagtaacgacttcaggttgtggaaggtaaagatgagggcaattttaattcaacaaaagtatgttgaagcattga 17694546  T
Q  241 agg 243  Q
    |||    
T  17694545 agg 17694543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 34 - 236
Target Start/End: Original strand, 13879019 - 13879221
Alignment:
Q  34 ctcctcgcatcaagtttattattgatgtg-tttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatca 132  Q
    |||| |||||||||||| || ||| |||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||    
T  13879019 ctccacgcatcaagtttttt-ttggtgtggtttttctcaacgaattcacaacaattggcgcccaccgtggggcaaaggtcaaatcaatagccaggtatca 13879117  T
Q  133 taagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaataaaagtgtgttga 232  Q
    |  ||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||| |||||    
T  13879118 tgggttcgaagtgggatattgaaaagttcaccggtagtaacgacttcgggttgtggaaggtgaagatgagggcaatcttaattcaacaaaagtgcgttga 13879217  T
Q  233 agca 236  Q
    ||||    
T  13879218 agca 13879221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 52 - 243
Target Start/End: Complemental strand, 22351737 - 22351546
Alignment:
Q  52 ttattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatat 151  Q
    |||||| |||| |||| |||||||||||||||||||| ||| ||| ||||||||||||||||||||||||| ||||| ||||  ||| ||||||||||||    
T  22351737 ttattggtgtgatttttacaacgaattcacaacaattagcgtccaccgtggggcaaaggtcaaatcaataaccaggtttcatgggttcgaagtgggatat 22351638  T
Q  152 tgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaataaaagtgtgttgaagcattgaagg 243  Q
    ||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||| |||||| ||||||||||| |||||    
T  22351637 tgaaaagtttaccggtagtaacgactttgggttttggaaggtaaagatgagggcaattctaattcaacaaaagtttgttgaagcatcgaagg 22351546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 8 - 200
Target Start/End: Complemental strand, 26068310 - 26068121
Alignment:
Q  8 tgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaa 107  Q
    |||||||||| ||||| |||| ||| |||| | |||||||||  |||||| |||| ||||  || |||||||||||||||||||||||| ||||||||||    
T  26068310 tgttttggttgcttaattatcccttgctccacacatcaagttg-ttattggtgtgattttt-catcgaattcacaacaattggcgcccaccgtggggcaa 26068213  T
Q  108 aggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
     |||||||   |||| || ||| |||  |||  |||| |||||||||||||||||||||   |||||| |||||||| |||||||||||||||    
T  26068212 gggtcaaa-ggataatcaagtaccatgggttcaaagtaggatattgagaagtttaccggagataacgatttcgggttatggaaggtaaagatg 26068121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 70 - 200
Target Start/End: Original strand, 30443739 - 30443868
Alignment:
Q  70 caacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtag 169  Q
    |||||||||||||||| ||||||||||  |||||| || | ||||||  |||| || |||||||  ||| ||||||||||||||||||||||||||| |     
T  30443739 caacgaattcacaacagttggcgcccactgtgggg-aatgatcaaatggataatcatgtatcatcggttcgaagtgggatattgagaagtttaccggaaa 30443837  T
Q  170 taacgacttcgggttgtggaaggtaaagatg 200  Q
    ||| || || ||||| |||||||||||||||    
T  30443838 taatgattttgggttatggaaggtaaagatg 30443868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 3631867 - 3631669
Alignment:
Q  1 tacactctgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgt 100  Q
    |||||| |||||||||| | ||| |||||||| |||| | | |||||||| |||||| |||||||||  || |||||||||||||||||| ||||| |||    
T  3631867 tacactttgttttggttgcctaattatcacttgctccacacgtcaagtttgttattggtgtgtttttt-catcgaattcacaacaattggagcccaccgt 3631769  T
Q  101 ggggca-aaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagat 199  Q
    |||||| | ||| |||  || || || ||| |||  |||  ||||||||||||||||||||||||||   |||||| || ||||| | ||||||||||||    
T  3631768 ggggcagagggttaaaggaa-aatcaagtaccatgggttcaaagtgggatattgagaagtttaccggagataacgattttgggttattgaaggtaaagat 3631670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 200
Target Start/End: Original strand, 33309257 - 33309443
Alignment:
Q  10 ttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaag 109  Q
    |||||||| ||||| |||| ||| |||| | |||||||||  |||||| |||| ||||||   |||||||||||||||||||||||| |||||||||| |    
T  33309257 ttttggttgcttaattatcccttgctccacacatcaagttg-ttattggtgtgattttcat--cgaattcacaacaattggcgcccaccgtggggcaagg 33309353  T
Q  110 gtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    ||| ||   ||||  | ||| |||  |||  ||||||||||| ||||||||||||||   |||||| |||||||| |||||||||||||||    
T  33309354 gtcgaa-ggataattaagtaccatgggttcaaagtgggatatcgagaagtttaccggagataacgatttcgggttatggaaggtaaagatg 33309443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 17012419 - 17012615
Alignment:
Q  1 tacactctgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgt 100  Q
    |||||| |||||||||| ||| | ||| | || |||| | |||||||| | |||||| |||| ||||  || |||||||||||||||||||||||| |||    
T  17012419 tacactttgttttggttgcttgattattatttgctccacacatcaagtattttattgttgtgattttt-catcgaattcacaacaattggcgcccaccgt 17012517  T
Q  101 ggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagat 199  Q
    ||||||| ||| |||   |||| || ||| |||| |||  |||||||||||||||||||||||||    |||||| ||  |||| ||||||||||||||    
T  17012518 ggggcaacggt-aaaaggataatcaagtaccataggttcaaagtgggatattgagaagtttaccgaagataacgattttaggttatggaaggtaaagat 17012615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 200
Target Start/End: Complemental strand, 15541066 - 15540876
Alignment:
Q  8 tgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaa 107  Q
    |||||||||| ||| | |||| ||| |||| | |||||||||| |||||| | || ||||  || |||| || |||||||| ||||||| ||||||||||    
T  15541066 tgttttggtttcttgactatcccttgctccacacatcaagtttgttattggtttgattttt-catcgaagtcgcaacaatttgcgcccaccgtggggcaa 15540968  T
Q  108 aggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
     |||||||  | ||| || |||||||  ||| ||||||||||||||||||| |||||||   |||| | || ||||| |||||||||||||||    
T  15540967 gggtcaaagga-taatcaagtatcatgggttcgaagtgggatattgagaagcttaccggagataacaattttgggttatggaaggtaaagatg 15540876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 200
Target Start/End: Complemental strand, 25465486 - 25465331
Alignment:
Q  41 catcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttg 140  Q
    |||||||| | |||||| |||| ||||||   ||||||||||||||||||| |||| |||||||||| | |||||   |||| |||||| ||  |||| |    
T  25465486 catcaagtattttattggtgtgattttcat--cgaattcacaacaattggcacccaccgtggggcaaggatcaaa-ggataatcaggtaccacgagttcg 25465390  T
Q  141 aagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    ||||||||||||||||| ||||||||   ||| || || ||||| |||||||||||||||    
T  25465389 aagtgggatattgagaaatttaccggagataatga-tttgggttatggaaggtaaagatg 25465331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 19701803 - 19701756
Alignment:
Q  39 cgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaa 86  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||    
T  19701803 cgcatcaagtttattattggtgtggttttcacaacgaattcacaacaa 19701756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 196
Target Start/End: Original strand, 3394794 - 3394947
Alignment:
Q  41 catcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttg 140  Q
    ||||||| || |||||| |||||||| | || ||||||| ||||||||||| |||| |||||||||| |||||||   |||| || ||| |||  |||      
T  3394794 catcaagatttttattggtgtgtttt-ctcatcgaattcgcaacaattggctcccaccgtggggcaagggtcaaa-ggataatcaagtaccatgggttca 3394891  T
Q  141 aagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaa 196  Q
    ||||||||||||||||| ||||||||   |||| | || ||||| |||||||||||    
T  3394892 aagtgggatattgagaaatttaccggagataacaattttgggttatggaaggtaaa 3394947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 26932485 - 26932289
Alignment:
Q  1 tacactctgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgt 100  Q
    |||||| |||||||||| ||| | |||| ||| |||| | |||||||||  |||||| |||| ||||  || | |||||||||||||| ||||||| |||    
T  26932485 tacactttgttttggttgcttgattatcccttgctccacacatcaagttg-ttattggtgtgattttt-catcaaattcacaacaattagcgcccaccgt 26932388  T
Q  101 ggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
     |||||| |||||||  | |||  | ||| |||  |||  ||||||||||| ||||||||||||||   |||||| || ||||| |||||||||||||||    
T  26932387 agggcaagggtcaaagga-taattaagtaccatgggttcaaagtgggatatcgagaagtttaccggagataacgatttagggttatggaaggtaaagatg 26932289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 85
Target Start/End: Complemental strand, 13467372 - 13467318
Alignment:
Q  31 ttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaaca 85  Q
    ||||||| |||||||| ||| |||||| |||| ||||||||||||||||||||||    
T  13467372 ttactccacgcatcaaattttttattggtgtggttttcacaacgaattcacaaca 13467318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 5408811 - 5408752
Alignment:
Q  141 aagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    |||||||||||||||||||| ||||| | |||||| || ||||| |||||||| ||||||    
T  5408811 aagtgggatattgagaagttcaccgggattaacgattttgggttatggaaggtgaagatg 5408752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 5413136 - 5413077
Alignment:
Q  141 aagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    |||||||||||||||||||| ||||| | |||||| || ||||| |||||||| ||||||    
T  5413136 aagtgggatattgagaagttcaccgggattaacgattttgggttatggaaggtgaagatg 5413077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 85
Target Start/End: Original strand, 13883755 - 13883806
Alignment:
Q  34 ctcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaaca 85  Q
    |||| |||||||||||| |||||| |||| ||||| ||||||||||||||||    
T  13883755 ctccacgcatcaagttttttattggtgtggttttctcaacgaattcacaaca 13883806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 16555311 - 16555370
Alignment:
Q  141 aagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    |||||||||||||||||||| |||||   |||||| |||||||| |||||||| ||||||    
T  16555311 aagtgggatattgagaagttcaccgggcttaacgatttcgggttatggaaggtgaagatg 16555370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 16578244 - 16578185
Alignment:
Q  141 aagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    |||||||||||||||||||| |||||   |||||| |||||||| |||||||| ||||||    
T  16578244 aagtgggatattgagaagttcaccgggcttaacgatttcgggttatggaaggtgaagatg 16578185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 16617136 - 16617195
Alignment:
Q  141 aagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    |||||||||||||||||||| |||||   |||||| |||||||| |||||||| ||||||    
T  16617136 aagtgggatattgagaagttcaccgggcttaacgatttcgggttatggaaggtgaagatg 16617195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 16631867 - 16631926
Alignment:
Q  141 aagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    |||||||||||||||||||| |||||   |||||| |||||||| |||||||| ||||||    
T  16631867 aagtgggatattgagaagttcaccgggcttaacgatttcgggttatggaaggtgaagatg 16631926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 24338378 - 24338292
Alignment:
Q  1 tacactctgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaatt 88  Q
    |||||| |||||||||| ||| | |||| ||| |||| | |||||||||| ||||||||||| ||||  || ||||||||||||||||    
T  24338378 tacactttgttttggttgcttgactatctcttgctccacacatcaagtttgttattgatgtgatttt-tcatcgaattcacaacaatt 24338292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 107
Target Start/End: Original strand, 17758390 - 17758424
Alignment:
Q  73 cgaattcacaacaattggcgcccaacgtggggcaa 107  Q
    |||||||||||||||||||||||| ||||||||||    
T  17758390 cgaattcacaacaattggcgcccaccgtggggcaa 17758424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 107
Target Start/End: Original strand, 16555242 - 16555275
Alignment:
Q  74 gaattcacaacaattggcgcccaacgtggggcaa 107  Q
    ||||||||||||||||||||||| ||||||||||    
T  16555242 gaattcacaacaattggcgcccaccgtggggcaa 16555275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 107
Target Start/End: Complemental strand, 16578313 - 16578280
Alignment:
Q  74 gaattcacaacaattggcgcccaacgtggggcaa 107  Q
    ||||||||||||||||||||||| ||||||||||    
T  16578313 gaattcacaacaattggcgcccaccgtggggcaa 16578280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 107
Target Start/End: Original strand, 16617067 - 16617100
Alignment:
Q  74 gaattcacaacaattggcgcccaacgtggggcaa 107  Q
    ||||||||||||||||||||||| ||||||||||    
T  16617067 gaattcacaacaattggcgcccaccgtggggcaa 16617100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 107
Target Start/End: Original strand, 16631798 - 16631831
Alignment:
Q  74 gaattcacaacaattggcgcccaacgtggggcaa 107  Q
    ||||||||||||||||||||||| ||||||||||    
T  16631798 gaattcacaacaattggcgcccaccgtggggcaa 16631831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 110
Target Start/End: Complemental strand, 18232667 - 18232630
Alignment:
Q  73 cgaattcacaacaattggcgcccaacgtggggcaaagg 110  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  18232667 cgaattcacaacaattggcgcccaccgtggggaaaagg 18232630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 33216108 - 33216160
Alignment:
Q  34 ctcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaa 86  Q
    |||| |||||||||||| |||||| |||| |||| |||| |||||||||||||    
T  33216108 ctccacgcatcaagttttttattggtgtggtttttacaaggaattcacaacaa 33216160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 158; Significance: 4e-84; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 34 - 243
Target Start/End: Original strand, 25351633 - 25351841
Alignment:
Q  34 ctcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcat 133  Q
    |||| |||||||||||| |||||| |||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  25351633 ctccacgcatcaagttt-ttattggtgtggttttctcaacgaattcacaacaattggcgcccaccgtggggcaaaggtcaaatcaataaccaggtatcat 25351731  T
Q  134 aagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaataaaagtgtgttgaa 233  Q
      ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  25351732 gggttcgaagtgggatattgaaaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaacaaaagtgtgttgaa 25351831  T
Q  234 gcattgaagg 243  Q
    ||||||||||    
T  25351832 gcattgaagg 25351841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 34 - 243
Target Start/End: Complemental strand, 44016565 - 44016357
Alignment:
Q  34 ctcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcat 133  Q
    |||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||| ||||||||||    
T  44016565 ctccacgcatcaagtttattattggtgtggttttcacaacgaattcacaacaattggcgcc-accgtggggcaaatgtcaaatcaataaccaggtatcat 44016467  T
Q  134 aagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaataaaagtgtgttgaa 233  Q
      | | ||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  44016466 ggggtcgaagtgggatattgaaaagtttaccagtagtaacgacttctggttgtggaaggtaaagatgagggcaattctaattcaacaaaagtgtgttgaa 44016367  T
Q  234 gcattgaagg 243  Q
    ||||||||||    
T  44016366 gcattgaagg 44016357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 34 - 243
Target Start/End: Original strand, 7070077 - 7070284
Alignment:
Q  34 ctcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcat 133  Q
    |||| ||||||||||||  ||||| |||| ||||| | ||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||    
T  7070077 ctccacgcatcaagttt--tattggtgtggttttctctacgaattcacaacaattggcgcccaccgtggggcaaaggtcaagtcaataaccaggtatcat 7070174  T
Q  134 aagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaataaaagtgtgttgaa 233  Q
      ||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  7070175 gggttcgaagtgggatattgaaaagttcaccggtagtaacgacttcgggttgtggaaggtgaagatgagggcaattttaattcaacaaaagtgtgttgaa 7070274  T
Q  234 gcattgaagg 243  Q
    || |||||||    
T  7070275 gctttgaagg 7070284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 34 - 236
Target Start/End: Original strand, 25405695 - 25405896
Alignment:
Q  34 ctcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcat 133  Q
    |||| |||||||||||| |||||| |||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||    
T  25405695 ctccacgcatcaagttt-ttattggtgtggttttctcaacgaattcacaacaattggcgcccaccgtggggcaaaggtcaaatcaatagccaggtatcat 25405793  T
Q  134 aagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaataaaagtgtgttgaa 233  Q
      ||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||| ||||||    
T  25405794 gggttcgaagtgggatattgaaaagttcaccggtagtaacgacttcgggttgtggaaggtgaagatgagggcaatcttaattcaacaaaagtgcgttgaa 25405893  T
Q  234 gca 236  Q
    |||    
T  25405894 gca 25405896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 34 - 236
Target Start/End: Complemental strand, 3324688 - 3324486
Alignment:
Q  34 ctcctcgcatcaagtttattattgatgtg-tttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatca 132  Q
    |||| |||||||||||| |||||| |||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||    
T  3324688 ctccacgcatcaagttt-ttattggtgtggtttttctcaacgaattcacaacaattggcgcccaccgtggggcaaaggtcaaatcaatagccaggtatca 3324590  T
Q  133 taagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaataaaagtgtgttga 232  Q
    |  ||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||| |||||    
T  3324589 tgggttcgaagtgggatattgaaaagttcaccggtagtaacgacttcgggttgtggaaggtgaagatgagggcaatcttaattcaacaaaagtgcgttga 3324490  T
Q  233 agca 236  Q
    ||||    
T  3324489 agca 3324486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 41 - 179
Target Start/End: Original strand, 25357334 - 25357472
Alignment:
Q  41 catcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttg 140  Q
    |||||||||| |||||| |||| ||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||  ||| |    
T  25357334 catcaagtttgttattggtgtggttttctcaacgaattgacaacaattggcgcccaccgtggggcaaaggtcaaatcaataaccaggtatcatgggttcg 25357433  T
Q  141 aagtgggatattgagaagtttaccggtagtaacgacttc 179  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  25357434 aagtgggatattgaaaagttcaccggtagtaacgacttc 25357472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 24748951 - 24749149
Alignment:
Q  1 tacactctgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgt 100  Q
    |||||| ||||||||||  || | |||| ||| |||| | |||||||||| |||||| |||| ||||| || ||||||||||||||||||| |||| |||    
T  24748951 tacactttgttttggttgtttgattatcccttgctccacacatcaagtttgttattggtgtggttttctcatcgaattcacaacaattggcccccaccgt 24749050  T
Q  101 ggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    ||||||| |||||||    ||| || ||| |||  ||| ||||||||||||||||||| |||||||   |||||| || ||||| |||||||||||||||    
T  24749051 ggggcaagggtcaaa-ggttaatcaagtaccatgggttcgaagtgggatattgagaagattaccggagataacgattttgggttatggaaggtaaagatg 24749149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 7351574 - 7351377
Alignment:
Q  1 tacactctgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgt 100  Q
    |||||| |||||||||| ||||| |||| |||||||| | |||||||||  |||||| |||| ||||  || |||||||||||||||||||||||| |||    
T  7351574 tacactttgttttggttgcttaattatcccttactccacacatcaagttg-ttattggtgtgattttttcatcgaattcacaacaattggcgcccaccgt 7351476  T
Q  101 ggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    ||||||| |||||||   ||||  | ||| |||  |||  ||||||||||| |||||||||| |||   |||||| |||||| | |||||||||||||||    
T  7351475 ggggcaagggtcaaa-ggataattaagtaccatgggttcaaagtgggatatcgagaagtttatcggagataacgatttcgggctatggaaggtaaagatg 7351377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 44724939 - 44725137
Alignment:
Q  1 tacactctgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacg- 99  Q
    |||||| |||||||||| ||| | |||| ||| |||| | |||||||||| |||||| |||||||| | || ||||||| |||||||||||| ||| |      
T  44724939 tacactttgttttggttgcttgactatcccttgctccacacatcaagtttgttattggtgtgttttcc-catcgaattcgcaacaattggcgtccagcca 44725037  T
Q  100 tggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagat 199  Q
    |||||||| |||||||  | ||| || ||| |||  ||| |||||||||||||||||||||||||||   |||||| || ||||| ||||||||||||||    
T  44725038 tggggcaagggtcaaagga-taatcaagtaccatgggttcgaagtgggatattgagaagtttaccggagataacgattttgggttatggaaggtaaagat 44725136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 73 - 200
Target Start/End: Original strand, 21678494 - 21678620
Alignment:
Q  73 cgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaa 172  Q
    |||||||||||||||||||||||| | |||||||| |||||||  ||||| || ||| |||  ||| |||||||||||||||||||||||||||   |||    
T  21678494 cgaattcacaacaattggcgcccaccatggggcaagggtcaaag-aataatcaagtaccatgggttcgaagtgggatattgagaagtttaccggagataa 21678592  T
Q  173 cgacttcgggttgtggaaggtaaagatg 200  Q
    ||| || ||||| || ||||||||||||    
T  21678593 cgattttgggttatgaaaggtaaagatg 21678620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 73 - 200
Target Start/End: Original strand, 28486001 - 28486127
Alignment:
Q  73 cgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaa 172  Q
    |||||||||||||||||||||||| | |||||||| |||||||  | ||| || ||| |||  ||| |||||||||||||||||||||||||||   |||    
T  28486001 cgaattcacaacaattggcgcccaccatggggcaagggtcaaagga-taatcaagtaccatgggttcgaagtgggatattgagaagtttaccggagataa 28486099  T
Q  173 cgacttcgggttgtggaaggtaaagatg 200  Q
    ||| || ||||| |||||||||||||||    
T  28486100 cgattttgggttatggaaggtaaagatg 28486127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 41 - 200
Target Start/End: Complemental strand, 7094343 - 7094187
Alignment:
Q  41 catcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttg 140  Q
    |||||||||| |||||| |||| ||||||   ||||||| |||||||||||||||| |||||||||| |||||||  |||||  | ||| |||  |||      
T  7094343 catcaagtttgttattggtgtgattttcat--cgaattcgcaacaattggcgcccatcgtggggcaagggtcaaa-gaataattaagtaccatgggttca 7094247  T
Q  141 aagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    ||||||||||||||||||||||| ||   |||||| || ||||| |||||||||||||||    
T  7094246 aagtgggatattgagaagtttactggagataacgattttgggttatggaaggtaaagatg 7094187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 38394352 - 38394548
Alignment:
Q  1 tacactctgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgt 100  Q
    |||||| |||||||||| ||| | |||| ||| |||| | |||||||||  |||||| |||| ||||  || |||||||||||||||||||||||| |||    
T  38394352 tacactttgttttggttgcttgattatcccttgctccacacatcaagttg-ttattggtgtgattttt-catcgaattcacaacaattggcgcccaccgt 38394449  T
Q  101 ggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    ||||||| |||| ||   ||||  | ||| |||  |||  ||||||||||| ||||||||||||||   |||||| |||||||| |||||||||||||||    
T  38394450 ggggcaagggtcgaa-ggataattaagtaccatgggttcaaagtgggatatcgagaagtttaccggagataacgatttcgggttatggaaggtaaagatg 38394548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 73 - 200
Target Start/End: Complemental strand, 1049141 - 1049015
Alignment:
Q  73 cgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaa 172  Q
    ||||||| |||||||||||| ||| |||||||||| |||||||  | |||  | ||| |||  |||  ||||||||||||||||||||||||||   |||    
T  1049141 cgaattcgcaacaattggcgtccaccgtggggcaagggtcaaagga-taattaagtaccatgtgttcaaagtgggatattgagaagtttaccggagataa 1049043  T
Q  173 cgacttcgggttgtggaaggtaaagatg 200  Q
    ||| |||||||| |||||||||||||||    
T  1049042 cgatttcgggttatggaaggtaaagatg 1049015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 200
Target Start/End: Original strand, 40550265 - 40550392
Alignment:
Q  73 cgaattcacaacaattggcgcccaacgtggggcaaagg-tcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagta 171  Q
    |||||||||||||||||||||||| ||||||||||||| || ||  | |||  | ||| |||  |||  ||||||||||| ||||||||||||||   ||    
T  40550265 cgaattcacaacaattggcgcccaccgtggggcaaagggtcgaagga-taattaagtaccatgggttcaaagtgggatatcgagaagtttaccggagata 40550363  T
Q  172 acgacttcgggttgtggaaggtaaagatg 200  Q
    |||| |||||||| |||||||||||||||    
T  40550364 acgatttcgggttatggaaggtaaagatg 40550392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 7471903 - 7471707
Alignment:
Q  1 tacactctgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgt 100  Q
    |||||| |||||||||| ||| | |||| ||| |||| | |||||||||  |||||| |||| ||||  ||  |||||| |||||||||| ||||| |||    
T  7471903 tacactttgttttggttgcttgattatcccttgctccacacatcaagttg-ttattggtgtgattttt-cattgaattcgcaacaattggtgcccaccgt 7471806  T
Q  101 ggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    ||||||| |||||||  | |||  | |||||||  |||  ||||||||||||||||||||||| ||   |||||| || ||||| |||||||||||||||    
T  7471805 ggggcaagggtcaaagga-taattaagtatcatgggttcaaagtgggatattgagaagtttactggagataacgattttgggttatggaaggtaaagatg 7471707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 20297728 - 20297923
Alignment:
Q  1 tacactctgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgt 100  Q
    |||||| |||||||||| ||| | |||| ||| |||| | |||||||||  |||||| |||| ||||  || |||||||||||||||||||||||| |||    
T  20297728 tacactttgttttggttgcttgattatctcttgctccacacatcaagttg-ttattggtgtgattttt-catcgaattcacaacaattggcgcccaccgt 20297825  T
Q  101 ggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    ||||| | |||||||   ||||  | ||| |||  |||  |||||||||||||||||||||||| |   |||||| || ||||| |||||||||||||||    
T  20297826 ggggc-agggtcaaa-ggataattaagtaccatgggttcaaagtgggatattgagaagtttaccagagataacgattttgggttatggaaggtaaagatg 20297923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 7188895 - 7189059
Alignment:
Q  1 tacactctgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgccca-acg 99  Q
    |||||| |||||||||| ||| | ||| |||| |||| | |||||||| | ||||||||||| ||||   | |||||||||||||||||| ||||| ||     
T  7188895 tacactttgttttggttgcttgattattacttgctccacacatcaagtattttattgatgtgattttttgatcgaattcacaacaattggtgcccagaca 7188994  T
Q  100 tggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccgg 166  Q
    | |||||| | |||||  ||||| || |||||||  ||| ||||||||||||||| |||||||||||    
T  7188995 t-gggcaaggatcaaa-gaataatcaagtatcatgggttcgaagtgggatattgacaagtttaccgg 7189059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 243
Target Start/End: Complemental strand, 12406075 - 12405973
Alignment:
Q  141 aagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaataaaagtgtgttgaagcattga 240  Q
    |||||||| || |||||||||||||| ||||| || |||| |||||||||||| ||||||   ||| |||| |  ||| |||||||||| ||||||||||    
T  12406075 aagtgggacatcgagaagtttaccggaagtaatgatttcgagttgtggaaggttaagatgcaagcagttttgacacaacaaaagtgtgtagaagcattga 12405976  T
Q  241 agg 243  Q
    |||    
T  12405975 agg 12405973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 243
Target Start/End: Complemental strand, 18413396 - 18413294
Alignment:
Q  141 aagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaataaaagtgtgttgaagcattga 240  Q
    |||||||| || |||||||| ||||| ||||| || ||||||||||||||||| ||||||   ||| |||| |  ||| |||||||||| ||||||||||    
T  18413396 aagtgggacatcgagaagttcaccggaagtaatgatttcgggttgtggaaggttaagatgcaagcagttttgacacaacaaaagtgtgtagaagcattga 18413297  T
Q  241 agg 243  Q
    |||    
T  18413296 agg 18413294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 44512414 - 44512362
Alignment:
Q  34 ctcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaa 86  Q
    |||| |||||||||||| |||||| |||||||||| |||||||||||||||||    
T  44512414 ctccacgcatcaagttttttattggtgtgtttttctcaacgaattcacaacaa 44512362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 22135306 - 22135365
Alignment:
Q  141 aagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    ||||||||||| ||||||||||||||   |||||| |||||||| |||||||||||||||    
T  22135306 aagtgggatatcgagaagtttaccggagataacgatttcgggttatggaaggtaaagatg 22135365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 200
Target Start/End: Complemental strand, 31159532 - 31159414
Alignment:
Q  81 caacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacgacttcg 180  Q
    |||||||||||||||| |||||||||| |||||||  | |||  | ||| |||  |||  |||||||||||||| |||||||||||   |||||| || |    
T  31159532 caacaattggcgcccaccgtggggcaagggtcaaagga-taattaagtaccatgggttcaaagtgggatattgataagtttaccggagataacgattttg 31159434  T
Q  181 ggttgtggaaggtaaagatg 200  Q
    |||| |||||||||||||||    
T  31159433 ggttatggaaggtaaagatg 31159414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 109
Target Start/End: Original strand, 9185437 - 9185473
Alignment:
Q  73 cgaattcacaacaattggcgcccaacgtggggcaaag 109  Q
    |||||||||||||||||||||||| ||||||||||||    
T  9185437 cgaattcacaacaattggcgcccaccgtggggcaaag 9185473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 85
Target Start/End: Original strand, 30247252 - 30247303
Alignment:
Q  34 ctcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaaca 85  Q
    |||| |||||||||||| |||||| |||| ||||| ||||||||||||||||    
T  30247252 ctccgcgcatcaagttttttattggtgtggttttctcaacgaattcacaaca 30247303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 48489857 - 48489916
Alignment:
Q  141 aagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    |||||||||||||||||||| ||||| ||||| || || ||||| |||||||| ||||||    
T  48489857 aagtgggatattgagaagttcaccggaagtaatgattttgggttatggaaggtgaagatg 48489916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 110
Target Start/End: Complemental strand, 3047075 - 3047038
Alignment:
Q  73 cgaattcacaacaattggcgcccaacgtggggcaaagg 110  Q
    |||||||||||||||||||||||| ||||| |||||||    
T  3047075 cgaattcacaacaattggcgcccaccgtggagcaaagg 3047038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 200
Target Start/End: Original strand, 6046921 - 6047046
Alignment:
Q  75 aattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacg 174  Q
    ||||||||||||||||||||||  ||| |  |||| ||||||| |||| || |||||||  ||   ||||||||||||||||| |||| | |   ||| |    
T  6046921 aattcacaacaattggcgcccactgtgagtaaaagatcaaatcgataatcaagtatcatgggtccaaagtgggatattgagaattttatcagagataatg 6047020  T
Q  175 acttcgggttgtggaaggtaaagatg 200  Q
    | || ||||| |||||||||||||||    
T  6047021 attttgggttatggaaggtaaagatg 6047046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 42006946 - 42006995
Alignment:
Q  39 cgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaatt 88  Q
    ||||||||||||||||||  | || ||||||| |||||||||||||||||    
T  42006946 cgcatcaagtttattatttgtatggttttcactacgaattcacaacaatt 42006995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 106
Target Start/End: Complemental strand, 49091484 - 49091451
Alignment:
Q  73 cgaattcacaacaattggcgcccaacgtggggca 106  Q
    |||||||||||||||||||||||| |||||||||    
T  49091484 cgaattcacaacaattggcgcccaccgtggggca 49091451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 7464415 - 7464364
Alignment:
Q  34 ctcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaa 86  Q
    |||| |||||||||||| |||||| |||| ||||| |||||||||||||||||    
T  7464415 ctccacgcatcaagttt-ttattggtgtggttttctcaacgaattcacaacaa 7464364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 44010648 - 44010600
Alignment:
Q  40 gcatcaagtttattattgatgtgtttttcacaacgaattcacaacaatt 88  Q
    ||||||| |||||||||| |||  |||||| ||||||||||||||||||    
T  44010648 gcatcaaatttattattggtgtagttttcagaacgaattcacaacaatt 44010600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 158; Significance: 4e-84; HSPs: 45)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 34 - 243
Target Start/End: Original strand, 4558588 - 4558797
Alignment:
Q  34 ctcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcat 133  Q
    |||| ||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  4558588 ctccacgcatcaagtttattattggtgtggttttctcaacgaattcacaacaattggcgcccaccgtggggcaaaggtcaaatcaataaccaggtatcat 4558687  T
Q  134 aagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaataaaagtgtgttgaa 233  Q
      ||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  4558688 gggttcgaagtgggatattgaaaagtttaccggtagtaacgacttcaggttgtggaaggtaaagatgagggcaattctaattcaacaaaagtgtgttgaa 4558787  T
Q  234 gcattgaagg 243  Q
    ||||||||||    
T  4558788 gcattgaagg 4558797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 34 - 242
Target Start/End: Original strand, 15312598 - 15312806
Alignment:
Q  34 ctcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcat 133  Q
    |||| |||||||||||| |||||| |||| ||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||    
T  15312598 ctccacgcatcaagttttttattggtgtggttttctcaacgaattcacaacaattggcgcccaccgtggggtaaaggtcaaatcaataaccaggtatcat 15312697  T
Q  134 aagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaataaaagtgtgttgaa 233  Q
      ||| ||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  15312698 gggttcgaagtgggatattgaaaagtttaccggtagtaacctcttcgggttgtggaaggtaaagatgagggcaattctaattcaagaaaagtgtgttgaa 15312797  T
Q  234 gcattgaag 242  Q
    |||||||||    
T  15312798 gcattgaag 15312806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 70 - 204
Target Start/End: Original strand, 16631496 - 16631630
Alignment:
Q  70 caacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtag 169  Q
    |||| |||||||||||||||||||||| | |||||||| |||||||||||||| ||||||||||  | | ||||||||||||||| ||||||||| ||||    
T  16631496 caacaaattcacaacaattggcgcccaccatggggcaacggtcaaatcaataaccaggtatcattgggtcgaagtgggatattgaaaagtttaccagtag 16631595  T
Q  170 taacgacttcgggttgtggaaggtaaagatgaggg 204  Q
    ||| |||||||||||||||||||||||||||||||    
T  16631596 taatgacttcgggttgtggaaggtaaagatgaggg 16631630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 14789356 - 14789159
Alignment:
Q  1 tacactctgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgt 100  Q
    |||||| |||||||||| ||| | |||| ||| |||| | |||||||||| |||||| |||| ||||  || ||||||| |||||||||||||||| |||    
T  14789356 tacactttgttttggttgcttgattatcccttgctccacacatcaagtttgttattggtgtgattttt-catcgaattcgcaacaattggcgcccaccgt 14789258  T
Q  101 ggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    ||||||| |||||||  | ||| || ||| ||| |||| |||||||||||||||||||||||||||   |||||| || ||||| |||||||||||||||    
T  14789257 ggggcaagggtcaaagga-taatcaagtaccatgagttcgaagtgggatattgagaagtttaccggagataacgattttgggttatggaaggtaaagatg 14789159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 18409276 - 18409078
Alignment:
Q  1 tacactctgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgt 100  Q
    |||||| |||||||||| ||| | |||||||| |||| | ||||||||||||||||| |||| ||||  || |||||||||||||||| |  |||| |||    
T  18409276 tacactttgttttggttgcttgactatcacttgctccacacatcaagtttattattggtgtgattttttcatcgaattcacaacaatttggtcccatcgt 18409177  T
Q  101 ggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    ||||||| |||||||   |||| || ||| |||  |||  ||||||||||||||||||||||||||   |||||| || ||||| |||||||||||||||    
T  18409176 ggggcaagggtcaaa-ggataatcaagtaccatgggttcaaagtgggatattgagaagtttaccggagataacgattttgggttatggaaggtaaagatg 18409078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 47563164 - 47563362
Alignment:
Q  1 tacactctgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgt 100  Q
    |||||| |||||||||| ||| | |||  ||| |||| | |||||||||| |||||| |||| ||||| || | ||||||||||| |||||||||| |||    
T  47563164 tacactttgttttggttgcttgattattccttgctccacacatcaagtttgttattggtgtggttttctcatcaaattcacaacacttggcgcccaccgt 47563263  T
Q  101 ggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    ||||||| |||||||   |||| || ||| |||  ||| |||||| ||||||||||||||||||||  ||||||| || ||||| |||||||||||||||    
T  47563264 ggggcaagggtcaaa-ggataatcaagtaccatgggttcgaagtgagatattgagaagtttaccggaggtaacgattttgggttatggaaggtaaagatg 47563362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 22802660 - 22802463
Alignment:
Q  1 tacactctgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgt 100  Q
    |||||| |||||||||| ||| | |||| ||| |||| | |||||||||| |||||| |||| ||||  || |||||||||||||||||||||||| |||    
T  22802660 tacactttgttttggttgcttgattatcccttgctccacacatcaagtttgttattggtgtgattttt-catcgaattcacaacaattggcgcccaccgt 22802562  T
Q  101 ggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    ||||||| |||||||   |||| || ||| |||  |||  ||||||||||||||||||||||||||   |||||| ||  |||| |||||||||||||||    
T  22802561 ggggcaagggtcaaa-ggataatcaagtaccatgggttcaaagtgggatattgagaagtttaccggagataacgattttaggttatggaaggtaaagatg 22802463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 200
Target Start/End: Complemental strand, 18311275 - 18311101
Alignment:
Q  25 tatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaac 124  Q
    |||||||| |||| | ||||||||||||||||| |||| ||||  || |||||||||||||||| |  |||| |||||||||| |||||||   |||| |    
T  18311275 tatcacttgctccacacatcaagtttattattggtgtgattttttcatcgaattcacaacaatttggtcccatcgtggggcaagggtcaaa-ggataatc 18311177  T
Q  125 aggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    | ||| |||  |||  ||||||||||||||||||||||||||   |||||| || ||||| |||||||||||||||    
T  18311176 aagtaccatgggttcaaagtgggatattgagaagtttaccggagataacgattttgggttatggaaggtaaagatg 18311101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 11008490 - 11008294
Alignment:
Q  1 tacactctgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgt 100  Q
    |||||| |||||||||| ||| | |||| ||| |||| | |||||||||  |||||| ||||||||||  | |||||||||||||||||||||||| |||    
T  11008490 tacactttgttttggttgcttgattatcccttgctccacacatcaagttg-ttattggtgtgtttttcg-atcgaattcacaacaattggcgcccaccgt 11008393  T
Q  101 ggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    ||||||| |||| ||   ||||  | ||| |||  |||  ||||||||||||||||||||||||||   |||||| || ||||| |||||||||||||||    
T  11008392 ggggcaagggtcgaa-ggataattaagtaccatgggttcaaagtgggatattgagaagtttaccggagataacgattttgggttatggaaggtaaagatg 11008294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 16453713 - 16453910
Alignment:
Q  1 tacactctgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgt 100  Q
    |||||| |||||||||| | | | |||||||| |||| | |||||||||| |||||| |||| ||||  || |||||||||||||||||| ||||| |||    
T  16453713 tacactttgttttggttgcctgattatcacttgctccacacatcaagtttgttattggtgtgattttt-catcgaattcacaacaattggtgcccaccgt 16453811  T
Q  101 ggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    ||||||| |||||||  || || || ||| |||  ||| ||||||||||||||| ||||||| |||   |||||| || ||||| ||||| |||||||||    
T  16453812 ggggcaagggtcaaaggaa-aatcaagtaccatgggttcgaagtgggatattgaaaagtttatcggagataacgattttgggttatggaatgtaaagatg 16453910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 75 - 200
Target Start/End: Original strand, 11435438 - 11435562
Alignment:
Q  75 aattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacg 174  Q
    ||||||||| |||||||||||| |||||||||| |||||||  | ||| || |||||||  |||  ||||||||||||||||||||||| ||  ||||||    
T  11435438 aattcacaataattggcgcccaccgtggggcaagggtcaaagga-taatcaagtatcatgggttcaaagtgggatattgagaagtttactggaggtaacg 11435536  T
Q  175 acttcgggttgtggaaggtaaagatg 200  Q
    | || ||||| |||||||||||||||    
T  11435537 attttgggttatggaaggtaaagatg 11435562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 74 - 201
Target Start/End: Original strand, 26558068 - 26558195
Alignment:
Q  74 gaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaac 173  Q
    |||||||||||||||| |||||| |||||||||| | ||||||| |||| || ||| |||  |||  ||||||||||| |||||||| ||| | ||||||    
T  26558068 gaattcacaacaattgacgcccaccgtggggcaaggatcaaatcgataatcatgtaccatgggttcaaagtgggatatcgagaagttcaccagaagtaac 26558167  T
Q  174 gacttcgggttgtggaaggtaaagatga 201  Q
    || || ||||| |||||||| |||||||    
T  26558168 gattttgggttatggaaggtcaagatga 26558195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 9176396 - 9176201
Alignment:
Q  1 tacactctgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgt 100  Q
    |||||| |||||||||| ||| | |||| ||| |||| | |||||||||  |||||| |||| |||||    ||||||| |||||||||||||||| |||    
T  9176396 tacactttgttttggttgcttgattatcccttgctccacacatcaagttg-ttattggtgtgattttcgt--cgaattcgcaacaattggcgcccaccgt 9176300  T
Q  101 ggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    |||||||||||||||   ||||  | ||| |||  |||  ||||| ||||| ||||||||||||||   |||||| |||||||| |||||||||||||||    
T  9176299 ggggcaaaggtcaaa-ggataattaagtaccatgggttcaaagtgcgatatagagaagtttaccggagataacgatttcgggttatggaaggtaaagatg 9176201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 76 - 200
Target Start/End: Complemental strand, 22134466 - 22134343
Alignment:
Q  76 attcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacga 175  Q
    ||||||||||||||||||||| |||||||||| |||| ||  | |||  | ||| |||  |||  ||||||||||||||||||||||||||   ||||||    
T  22134466 attcacaacaattggcgcccaccgtggggcaagggtcgaagga-taattaagtaccatgggttcaaagtgggatattgagaagtttaccggagataacga 22134368  T
Q  176 cttcgggttgtggaaggtaaagatg 200  Q
     |||||||| |||||||||||||||    
T  22134367 tttcgggttatggaaggtaaagatg 22134343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 73 - 200
Target Start/End: Complemental strand, 16934000 - 16933874
Alignment:
Q  73 cgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaa 172  Q
    |||||||||||||||||||||||| |||||||||| |||| ||  | |||  | |||||||  |||  ||||||||||| ||||||||||||||   |||    
T  16934000 cgaattcacaacaattggcgcccaccgtggggcaagggtcgaagga-taattaagtatcatgggttcaaagtgggatatcgagaagtttaccggagataa 16933902  T
Q  173 cgacttcgggttgtggaaggtaaagatg 200  Q
     || |||||||| |||||||||||||||    
T  16933901 tgatttcgggttatggaaggtaaagatg 16933874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 200
Target Start/End: Original strand, 10113336 - 10113465
Alignment:
Q  70 caacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtag 169  Q
    |||||| |||||||||||||||||||| |||||||||| | ||||| | |||| || ||| |||  | | ||||||||||||||||||||||||| |       
T  10113336 caacgacttcacaacaattggcgcccaccgtggggcaaggatcaaa-cgataatcaagtaccatgggctagaagtgggatattgagaagtttaccagaga 10113434  T
Q  170 taacgacttcgggttgtggaaggtaaagatg 200  Q
    ||| || || ||||| |||||||||||||||    
T  10113435 taatgattttgggttatggaaggtaaagatg 10113465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 200
Target Start/End: Complemental strand, 18537337 - 18537211
Alignment:
Q  73 cgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaa 172  Q
    |||||||||||||||| |||||||  ||||||||| ||| |||  | ||| || ||| |||  | | ||||||| |||||||||||||||||||  ||||    
T  18537337 cgaattcacaacaattagcgcccactgtggggcaagggttaaagga-taatcaagtaccatgggctcgaagtggtatattgagaagtttaccggaggtaa 18537239  T
Q  173 cgacttcgggttgtggaaggtaaagatg 200  Q
    ||| || ||||| |||||||||||||||    
T  18537238 cgattttgggttatggaaggtaaagatg 18537211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 200
Target Start/End: Complemental strand, 22782589 - 22782463
Alignment:
Q  73 cgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaa 172  Q
    ||||||| |||||||||||||||| |||||||||| |||| ||  | |||  | ||| |||  |||  ||||||||||| ||||||||||||||   |||    
T  22782589 cgaattcgcaacaattggcgcccaccgtggggcaagggtcgaagga-taattaagtaccatgggttcaaagtgggatatcgagaagtttaccggagataa 22782491  T
Q  173 cgacttcgggttgtggaaggtaaagatg 200  Q
    ||| |||||||| |||||||||||||||    
T  22782490 cgatttcgggttatggaaggtaaagatg 22782463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 200
Target Start/End: Complemental strand, 36921381 - 36921224
Alignment:
Q  41 catcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttg 140  Q
    |||||||||| |||||| |||| ||||  || ||||||| |||||||||||||||| | |||||||| ||||| |   |||| || |||||||  |||      
T  36921381 catcaagtttgttattggtgtgattttt-catcgaattcgcaacaattggcgcccaccatggggcaagggtcaga-ggataatcaagtatcatgggttca 36921284  T
Q  141 aagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    ||||||||||||||||| ||||||||   |||| | || ||||| |||||||||||||||    
T  36921283 aagtgggatattgagaattttaccggagataacaattttgggttatggaaggtaaagatg 36921224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 22046609 - 22046496
Alignment:
Q  1 tacactctgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgt 100  Q
    |||||| |||||||||| ||| | |||| ||| |||| | |||||||||  |||||| |||| ||||   | |||||||||||||||||||||||| |||    
T  22046609 tacactttgttttggttgcttgattatcccttgctccacacatcaagttg-ttattggtgtgatttttcgatcgaattcacaacaattggcgcccaccgt 22046511  T
Q  101 ggggcaaaggtcaaa 115  Q
    ||||||| |||||||    
T  22046510 ggggcaagggtcaaa 22046496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 164
Target Start/End: Complemental strand, 12395766 - 12395612
Alignment:
Q  8 tgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaa 107  Q
    |||||||||| | | | |||||||| |||| | |||||||||| |||||| |||||||| | ||  |||||  ||| |||| || |||| ||||||||||    
T  12395766 tgttttggttgcctgattatcacttgctccacacatcaagtttgttattggtgtgtttt-ctcattgaatttgcaagaattagcacccaccgtggggcaa 12395668  T
Q  108 aggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttacc 164  Q
     |||||||  | ||| || ||| |||| ||| |||||||||||||||||||||||||    
T  12395667 cggtcaaagga-taatcaagtaccataggttcgaagtgggatattgagaagtttacc 12395612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 164
Target Start/End: Complemental strand, 12400728 - 12400574
Alignment:
Q  8 tgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaa 107  Q
    |||||||||| | | | |||||||| |||| | |||||||||| |||||| |||||||| | ||  |||||  ||| |||| || |||| ||||||||||    
T  12400728 tgttttggttgcctgattatcacttgctccacacatcaagtttgttattggtgtgtttt-ctcattgaatttgcaagaattagcacccaccgtggggcaa 12400630  T
Q  108 aggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttacc 164  Q
     |||||||  | ||| || ||| |||| ||| |||||||||||||||||||||||||    
T  12400629 cggtcaaagga-taatcaagtaccataggttcgaagtgggatattgagaagtttacc 12400574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 47275153 - 47275212
Alignment:
Q  25 tatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaaca 85  Q
    |||| |||||||| | |||||||||| ||||||||||| ||||||||||||||||||||||    
T  47275153 tatcccttactccacacatcaagtttgttattgatgtg-ttttcacaacgaattcacaaca 47275212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 12743670 - 12743611
Alignment:
Q  141 aagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    |||||||||||||||||||||||||| | |||||| || ||||| |||||||| ||||||    
T  12743670 aagtgggatattgagaagtttaccggaattaacgattttgggttatggaaggtgaagatg 12743611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 85
Target Start/End: Original strand, 36771679 - 36771725
Alignment:
Q  39 cgcatcaagtttattattgatgtgtttttcacaacgaattcacaaca 85  Q
    ||||||||||||||||||| |||| |||||||||| |||||||||||    
T  36771679 cgcatcaagtttattattgttgtggttttcacaacaaattcacaaca 36771725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 41997892 - 41997958
Alignment:
Q  1 tacactctgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgttttt 67  Q
    |||||| |||||||||| ||| | |||||||| |||| | ||||||||||||||||| |||||||||    
T  41997892 tacactttgttttggttgcttgattatcactttctccacacatcaagtttattattggtgtgttttt 41997958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 36769762 - 36769803
Alignment:
Q  39 cgcatcaagtttattattgatgtgtttttcacaacgaattca 80  Q
    ||||||||||||||||||| |||| |||||||||||||||||    
T  36769762 cgcatcaagtttattattggtgtggttttcacaacgaattca 36769803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 5872241 - 5872300
Alignment:
Q  141 aagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    |||||||||||||||||||| ||||  |||||||| || ||||| |||||||| ||||||    
T  5872241 aagtgggatattgagaagttcaccgaaagtaacgattttgggttatggaaggtgaagatg 5872300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 8393845 - 8393904
Alignment:
Q  141 aagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    |||||||||||||||||||| |||||   |||||| |||||||| |||||||| ||||||    
T  8393845 aagtgggatattgagaagttcaccgggcttaacgatttcgggttatggaaggtgaagatg 8393904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 88
Target Start/End: Original strand, 11853853 - 11853900
Alignment:
Q  41 catcaagtttattattgatgtgtttttcacaacgaattcacaacaatt 88  Q
    |||||||||| |||||| |||| ||||| |||||||||||||||||||    
T  11853853 catcaagttttttattggtgtggttttctcaacgaattcacaacaatt 11853900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 16624354 - 16624413
Alignment:
Q  141 aagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    |||||||| || |||||||| ||||| ||||| || ||||||||||||||||| ||||||    
T  16624354 aagtgggacatcgagaagttcaccggaagtaatgatttcgggttgtggaaggttaagatg 16624413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 52095104 - 52095045
Alignment:
Q  141 aagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    |||||||||||||||||||| ||||| | |||||| || ||||| |||||||| ||||||    
T  52095104 aagtgggatattgagaagttcaccggaattaacgattttgggttatggaaggtgaagatg 52095045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 22046495 - 22046441
Alignment:
Q  146 ggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    |||||||||||||||||||||   |||||| || ||||| |||||||||||||||    
T  22046495 ggatattgagaagtttaccggagataacgattttgggttatggaaggtaaagatg 22046441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 47566776 - 47566822
Alignment:
Q  40 gcatcaagtttattattgatgtgtttttcacaacgaattcacaacaa 86  Q
    |||||||||||||||||| |||| ||||| ||| |||||||||||||    
T  47566776 gcatcaagtttattattggtgtggttttctcaaagaattcacaacaa 47566822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 196
Target Start/End: Complemental strand, 3578546 - 3578421
Alignment:
Q  71 aacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagt 170  Q
    ||||||||||  |||||||| | |||  ||||||||| | ||||||| ||||  | ||  |||| ||| ||||||||||| |||||||||||||||   |    
T  3578546 aacgaattcaacacaattggtgtccactgtggggcaatgatcaaatcgataattaagttccataggttcgaagtgggatagtgagaagtttaccggatat 3578447  T
Q  171 aacgacttcgggttgtggaaggtaaa 196  Q
    ||||| || ||||| | |||||||||    
T  3578446 aacgatttggggttattgaaggtaaa 3578421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 110
Target Start/End: Original strand, 4588308 - 4588345
Alignment:
Q  73 cgaattcacaacaattggcgcccaacgtggggcaaagg 110  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  4588308 cgaattcacaacaattggcacccaccgtggggcaaagg 4588345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 7050174 - 7050124
Alignment:
Q  34 ctcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaa 86  Q
    |||| ||||||||||||  ||||| |||| |||||||||||||||||||||||    
T  7050174 ctccacgcatcaagttt--tattggtgtggttttcacaacgaattcacaacaa 7050124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 106
Target Start/End: Complemental strand, 12743740 - 12743707
Alignment:
Q  73 cgaattcacaacaattggcgcccaacgtggggca 106  Q
    |||||||||||||||||||||||| |||||||||    
T  12743740 cgaattcacaacaattggcgcccaccgtggggca 12743707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 15317245 - 15317290
Alignment:
Q  40 gcatcaagtttattattgatgtgtttttcacaacgaattcacaaca 85  Q
    ||||||||||| |||||| |||| ||||| ||||||||||||||||    
T  15317245 gcatcaagttttttattggtgtggttttctcaacgaattcacaaca 15317290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 4885152 - 4885203
Alignment:
Q  34 ctcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaa 86  Q
    |||| |||||||||||| |||||| |||| |||| ||||||||||||||||||    
T  4885152 ctccacgcatcaagttt-ttattggtgtgatttttacaacgaattcacaacaa 4885203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 8529550 - 8529601
Alignment:
Q  34 ctcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaa 86  Q
    |||| |||||||||||| |||||| |||| ||||| |||||||||||||||||    
T  8529550 ctccacgcatcaagttt-ttattggtgtggttttctcaacgaattcacaacaa 8529601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 106
Target Start/End: Original strand, 16624286 - 16624318
Alignment:
Q  74 gaattcacaacaattggcgcccaacgtggggca 106  Q
    ||||||||||||||||||||||| |||||||||    
T  16624286 gaattcacaacaattggcgcccaccgtggggca 16624318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 16632939 - 16632979
Alignment:
Q  203 ggcaattttaattcaataaaagtgtgttgaagcattgaagg 243  Q
    ||||||| |||||||| ||||||||| ||||||||||||||    
T  16632939 ggcaattctaattcaacaaaagtgtggtgaagcattgaagg 16632979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 16688844 - 16688793
Alignment:
Q  34 ctcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaa 86  Q
    |||| |||||||||||| |||||| |||| ||||| |||||||||||||||||    
T  16688844 ctccacgcatcaagttt-ttattggtgtggttttctcaacgaattcacaacaa 16688793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 18587248 - 18587299
Alignment:
Q  34 ctcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaa 86  Q
    |||| |||||||||||| |||||| |||| ||||| |||||||||||||||||    
T  18587248 ctccacgcatcaagttt-ttattggtgtggttttctcaacgaattcacaacaa 18587299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 154; Significance: 9e-82; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 34 - 243
Target Start/End: Original strand, 9522006 - 9522214
Alignment:
Q  34 ctcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcat 133  Q
    |||| |||||||||||| |||||| |||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  9522006 ctccacgcatcaagttt-ttattggtgtggttttctcaacgaattcacaacaattggcgcccaccgtggggcaaaggtcaaatcaataaccaggtatcat 9522104  T
Q  134 aagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaataaaagtgtgttgaa 233  Q
      ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  9522105 gggttcgaagtgggatattgaaaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattctaattcaacaaaagtgtgttgaa 9522204  T
Q  234 gcattgaagg 243  Q
    ||||||||||    
T  9522205 gcattgaagg 9522214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 39 - 243
Target Start/End: Complemental strand, 2401118 - 2400916
Alignment:
Q  39 cgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtt 138  Q
    ||||||||||||  ||||  |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||  |||    
T  2401118 cgcatcaagttt--tatttgtgtgattttcacaacgaattcacaacaattggcgcccaccgtggggcaaaggtcaaataaataaccaggtatcatgggtt 2401021  T
Q  139 tgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaataaaagtgtgttgaagcatt 238  Q
     ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  2401020 cgaagtgggatattgaaaagttttccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattctaattcaacaaaagtgtgttgaagcatt 2400921  T
Q  239 gaagg 243  Q
    |||||    
T  2400920 gaagg 2400916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 74 - 242
Target Start/End: Original strand, 14997357 - 14997525
Alignment:
Q  74 gaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaac 173  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||  ||| ||||||| ||||||||||||||||| ||||||||    
T  14997357 gaattcacaagaattggcgcccaccgtggggcaaaggtcaaatcaataaccaggtatcatgggttcgaagtggaatattgagaagtttacccgtagtaac 14997456  T
Q  174 gacttcgggttgtggaaggtaaagatgagggcaattttaattcaataaaagtgtgttgaagcattgaag 242  Q
    ||||| ||||| | ||||||||||||||||  |||| ||||| || |||||||||||||||||||||||    
T  14997457 gactttgggttctagaaggtaaagatgaggaaaattctaatttaacaaaagtgtgttgaagcattgaag 14997525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 41 - 200
Target Start/End: Complemental strand, 27339018 - 27338859
Alignment:
Q  41 catcaagtttattattgatgtg-tttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagttt 139  Q
    |||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||| |||||||   ||||  | ||| |||  |||     
T  27339018 catcaagtttgttattgatgtgatttttctcaacgaattcacaacaattggcgcccaccgtggggcaagggtcaaa-ggataattaagtaccatgggttc 27338920  T
Q  140 gaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
     ||||||||||||||||||||||||||   |||||| || ||||| |||||||||||||||    
T  27338919 aaagtgggatattgagaagtttaccggagataacgattttgggttatggaaggtaaagatg 27338859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 50078719 - 50078520
Alignment:
Q  1 tacactctgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgt 100  Q
    |||||| |||||||||| ||| | |||  ||| |||| | |||||||||| |||||| |||| ||||| || ||||||| |||||||||||||||| |||    
T  50078719 tacactttgttttggttgcttgattattccttgctccacacatcaagtttgttattggtgtgattttctcatcgaattcgcaacaattggcgcccaccgt 50078620  T
Q  101 -ggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagat 199  Q
     ||||||| |||| ||  | ||| || ||| |||| ||| |||||||||||||||||||||||||||   |||||| || ||||| ||||||||||||||    
T  50078619 tggggcaagggtcgaagta-taatcaagtaccataggttcgaagtgggatattgagaagtttaccggagataacgattttgggttatggaaggtaaagat 50078521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 16429304 - 16429501
Alignment:
Q  1 tacactctgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgt 100  Q
    |||||| |||||||||| | | | |||||||| |||| | |||||||||| |||||| |||| ||||  || |||||||||||||||||||||||| |||    
T  16429304 tacactttgttttggttgcctgattatcacttgctccacacatcaagtttgttattggtgtgattttt-catcgaattcacaacaattggcgcccaccgt 16429402  T
Q  101 ggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    ||||||| |||||||   |||| || |||||||  |||  |||||||| ||||||||||||||||    |||||| || || || |||||||||||||||    
T  16429403 ggggcaagggtcaaa-ggataatcaagtatcatgggttctaagtgggagattgagaagtttaccgaagataacgattttggattatggaaggtaaagatg 16429501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 73 - 200
Target Start/End: Original strand, 16226595 - 16226721
Alignment:
Q  73 cgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaa 172  Q
    |||||||||||||||||||||||| |||||||||| |||||||  | |||  | |||||||  |||  ||||||||||| ||||||||||||||   |||    
T  16226595 cgaattcacaacaattggcgcccaccgtggggcaagggtcaaagga-taattaagtatcatgggttcaaagtgggatatcgagaagtttaccggagataa 16226693  T
Q  173 cgacttcgggttgtggaaggtaaagatg 200  Q
    ||| |||||||| |||||||||||||||    
T  16226694 cgatttcgggttatggaaggtaaagatg 16226721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 200
Target Start/End: Complemental strand, 31424938 - 31424748
Alignment:
Q  8 tgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaa 107  Q
    |||| ||||| ||| |||||  ||| |||| | |||||||||| |||||| |||| ||||  ||  |||||| |||||||||||||||| ||||||||||    
T  31424938 tgttatggttgcttgagtattccttgctccacacatcaagtttgttattggtgtgattttt-cattgaattcgcaacaattggcgcccaccgtggggcaa 31424840  T
Q  108 aggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
     |||||||    ||| || ||| |||  ||| |||||||||||||||||||||||||||   |||||| || ||||| |||||||||||||||    
T  31424839 gggtcaaaggt-taatcaagtaccatgggttcgaagtgggatattgagaagtttaccggagataacgattttgggttatggaaggtaaagatg 31424748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 115
Target Start/End: Complemental strand, 28206971 - 28206882
Alignment:
Q  25 tatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaa 115  Q
    |||||||| |||| | |||||||||| |||||| |||||||| | || |||||||||||||||||||||||| |||||||||| |||||||    
T  28206971 tatcacttgctccacacatcaagtttgttattggtgtgtttt-ctcatcgaattcacaacaattggcgcccaccgtggggcaagggtcaaa 28206882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 25251204 - 25251045
Alignment:
Q  1 tacactctgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgt 100  Q
    |||||| |||||||||| ||| | |||| ||| |||| | |||||||||| |||||| |||| ||||  || ||||||||||| ||||||||| || | |    
T  25251204 tacactttgttttggttgcttgactatcccttgctccacacatcaagtttgttattggtgtgattttt-catcgaattcacaataattggcgctcacctt 25251106  T
Q  101 ggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagttta 162  Q
    |||||||||||||||   |||| || ||| |||  ||| |||||||||||||||||||||||    
T  25251105 ggggcaaaggtcaaa-ggataatcaagtaccatgggttcgaagtgggatattgagaagttta 25251045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 14183537 - 14183342
Alignment:
Q  1 tacactctgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgt 100  Q
    |||||| |||||||||| ||| | ||| |||| || | | |||||||| | |||||| |||| |||| |   |||||||||||||||||| ||||| |||    
T  14183537 tacactttgttttggttgcttgattattacttgcttcacacatcaagtattttattggtgtgatttttat--cgaattcacaacaattggtgccca-cgt 14183441  T
Q  101 ggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    ||||||||| |||||  | ||| || |||||||  ||| |||||||||||||||||| ||||||||   |||||| || ||||| |||||||||| ||||    
T  14183440 ggggcaaagatcaaagga-taatcaagtatcatgggttcgaagtgggatattgagaaatttaccggagataacgattttgggttatggaaggtaaggatg 14183342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 200
Target Start/End: Complemental strand, 28998153 - 28997981
Alignment:
Q  25 tatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaac 124  Q
    |||||||| |||| | |||||||||| | |||| |||||||| | |  |||||||||||||||||||||||| |||||||| |||||||||   |||| |    
T  28998153 tatcacttgctccacacatcaagtttgtcattggtgtgtttt-ctcttcgaattcacaacaattggcgcccaccgtggggc-aaggtcaaa-ggataatc 28998057  T
Q  125 aggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    | |||||||  ||| |||||| |||||||||||||||| |||   ||| || || ||||| || ||||||||||||    
T  28998056 aagtatcatgggttcgaagtgagatattgagaagtttatcggagataatgattttgggttatgaaaggtaaagatg 28997981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 200
Target Start/End: Complemental strand, 29003869 - 29003697
Alignment:
Q  25 tatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaac 124  Q
    |||||||| |||| | |||||||||| | |||| |||||||| | |  |||||||||||||||||||||||| |||||||| |||||||||   |||| |    
T  29003869 tatcacttgctccacacatcaagtttgtcattggtgtgtttt-ctcttcgaattcacaacaattggcgcccaccgtggggc-aaggtcaaa-ggataatc 29003773  T
Q  125 aggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    | |||||||  ||| |||||| |||||||||||||||| |||   ||| || || ||||| || ||||||||||||    
T  29003772 aagtatcatgggttcgaagtgagatattgagaagtttatcggagataatgattttgggttatgaaaggtaaagatg 29003697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 73 - 200
Target Start/End: Original strand, 47177789 - 47177915
Alignment:
Q  73 cgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaa 172  Q
    ||||||||||||||||| |||||| |||||||||| |||||||  | |||  | ||| |||  |||  ||||||||||||||||||||||||||   |||    
T  47177789 cgaattcacaacaattgccgcccaccgtggggcaagggtcaaagga-taattaagtaccatgggttcaaagtgggatattgagaagtttaccggagataa 47177887  T
Q  173 cgacttcgggttgtggaaggtaaagatg 200  Q
    | | |||||||| |||||||||||||||    
T  47177888 caatttcgggttatggaaggtaaagatg 47177915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 28223163 - 28223104
Alignment:
Q  141 aagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    |||||||||||||||||||||||||| |||||||| || ||||| |||||||| ||||||    
T  28223163 aagtgggatattgagaagtttaccggaagtaacgattttgggttatggaaggtgaagatg 28223104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 200
Target Start/End: Original strand, 51757961 - 51758087
Alignment:
Q  73 cgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaa 172  Q
    |||||||||||||||||||||||| |||||||||| |||||||   ||||  | ||| |||  |||  |||||||||||||||||||||||| |   |||    
T  51757961 cgaattcacaacaattggcgcccaccgtggggcaagggtcaaa-ggataattaagtaccatgggttcaaagtgggatattgagaagtttaccagagataa 51758059  T
Q  173 cgacttcgggttgtggaaggtaaagatg 200  Q
    ||| || ||||| |||||| ||||||||    
T  51758060 cgattttgggttatggaagataaagatg 51758087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 166
Target Start/End: Original strand, 20291822 - 20291974
Alignment:
Q  10 ttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaag 109  Q
    |||||||||||| | |||| ||| |||| | |||||||||  |||||| |||| ||||||   ||||||| ||||||||||| |||| |||||||||| |    
T  20291822 ttttggttacttgattatctcttgctccacacatcaagttg-ttattggtgtgattttcat--cgaattcgcaacaattggcacccaccgtggggcaagg 20291918  T
Q  110 gtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccgg 166  Q
    ||||||   |||| || |||||||  |||  ||||||||||||||||| ||||||||    
T  20291919 gtcaaa-ggataatcaagtatcatgggttcaaagtgggatattgagaattttaccgg 20291974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 129
Target Start/End: Complemental strand, 13426838 - 13426753
Alignment:
Q  42 atcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggta 129  Q
    ||||||| | |||||| |||| ||||||  ||||||||||||||||| |||| || |||||||||| | |||||||||||| ||||||    
T  13426838 atcaagtattttattggtgtgattttca--acgaattcacaacaatttgcgcacatcgtggggcaatgatcaaatcaataatcaggta 13426753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 75 - 165
Target Start/End: Complemental strand, 13785117 - 13785025
Alignment:
Q  75 aattcacaacaattggcgcccaacgtggggca-aagg-tcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccg 165  Q
    |||||||||||||||||| ||| ||||||||| |||| |||| |  ||||  ||||||||| |||  ||||||||||||||||||||||||||    
T  13785117 aattcacaacaattggcgtccaccgtggggcacaaggatcaagttgataattaggtatcatgagtacgaagtgggatattgagaagtttaccg 13785025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 47099168 - 47099227
Alignment:
Q  141 aagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    |||||||| ||||||||||| ||||| ||||| || ||||||||||||||||| ||||||    
T  47099168 aagtgggacattgagaagttcaccggaagtaatgatttcgggttgtggaaggttaagatg 47099227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 51750531 - 51750590
Alignment:
Q  141 aagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    ||||||||||||||||||||||||||   |||||| || ||||| |||||||||||||||    
T  51750531 aagtgggatattgagaagtttaccggagataacgattttgggttatggaaggtaaagatg 51750590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 28205612 - 28205554
Alignment:
Q  142 agtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    |||||||||||||||||||||||||   |||||| || ||||| |||||||||||||||    
T  28205612 agtgggatattgagaagtttaccggagataacgattttgggttatggaaggtaaagatg 28205554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 165
Target Start/End: Complemental strand, 13127575 - 13127496
Alignment:
Q  85 aattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccg 165  Q
    |||||||||||| |||||||||| | ||||| | ||||  | ||| ||| ||||||||||| |||||||||||||||||||    
T  13127575 aattggcgcccaccgtggggcaaggatcaaa-cgataatgaagtaccatgagtttgaagtgagatattgagaagtttaccg 13127496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 13215435 - 13215518
Alignment:
Q  1 tacactctgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaaca 85  Q
    |||||| ||||||||||  || | |||| ||| |||| | ||||||||||||||||| |||| ||||| ||||||||||||||||    
T  13215435 tacactttgttttggttgtttgactatcccttgctccacacatcaagtttattattggtgtg-ttttctcaacgaattcacaaca 13215518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 200
Target Start/End: Complemental strand, 8348917 - 8348791
Alignment:
Q  73 cgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaa 172  Q
    ||||||||||||||||| |||||| |||||||||| | |||||   |||| || |||||||  ||| ||||||  |||||||||| |||||  |   |||    
T  8348917 cgaattcacaacaattgacgcccaccgtggggcaatgatcaaa-ggataatcaagtatcatgggttcgaagtgaaatattgagaaatttactagagataa 8348819  T
Q  173 cgacttcgggttgtggaaggtaaagatg 200  Q
    ||| || ||||| |||||||||||||||    
T  8348818 cgattttgggttatggaaggtaaagatg 8348791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 19359187 - 19359246
Alignment:
Q  141 aagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    |||||||| || |||||||| ||||| ||||| || ||||||||||||||||| ||||||    
T  19359187 aagtgggacatcgagaagttcaccggaagtaatgatttcgggttgtggaaggttaagatg 19359246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 31657630 - 31657689
Alignment:
Q  141 aagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    |||||||||||||||||||| ||||| ||||| || || ||||| |||||||| ||||||    
T  31657630 aagtgggatattgagaagttcaccggaagtaatgattttgggttatggaaggtgaagatg 31657689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 25860296 - 25860250
Alignment:
Q  41 catcaagtttattattgatgtgtttttcacaacgaattcacaacaat 87  Q
    ||||||||||  ||||| |||| ||||||||||||||||||||||||    
T  25860296 catcaagtttgatattggtgtggttttcacaacgaattcacaacaat 25860250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 38925387 - 38925326
Alignment:
Q  25 tatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaat 87  Q
    ||||||||||||| | ||||||||||||||||| |||| ||||| || | |||||||||||||    
T  38925387 tatcacttactccacacatcaagtttattattggtgtg-ttttctcatcaaattcacaacaat 38925326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 21353248 - 21353195
Alignment:
Q  34 ctcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaat 87  Q
    |||| |||||||||||| |||||| |||| ||||| ||||||||||| ||||||    
T  21353248 ctccacgcatcaagtttgttattggtgtggttttctcaacgaattcataacaat 21353195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 27336827 - 27336782
Alignment:
Q  41 catcaagtttattattgatgtg-tttttcacaacgaattcacaaca 85  Q
    |||||||||| ||||||||||| |||||| ||||||||||||||||    
T  27336827 catcaagtttgttattgatgtgatttttctcaacgaattcacaaca 27336782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 110
Target Start/End: Complemental strand, 28223233 - 28223196
Alignment:
Q  73 cgaattcacaacaattggcgcccaacgtggggcaaagg 110  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  28223233 cgaattcacaacaattggcgtccaccgtggggcaaagg 28223196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 39 - 243
Target Start/End: Complemental strand, 16930 - 16727
Alignment:
Q  39 cgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtt 138  Q
    |||||||||||| |||||| |||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||  |||    
T  16930 cgcatcaagttt-ttattggtgtggttttctcaacgaattcacaacaattggcgcccaccgtggggcaaaggtcaaatcaataatcatgtatcatgggtt 16832  T
Q  139 tgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaataaaagtgtgttgaagcatt 238  Q
     ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  16831 cgaagtgggatattgaaaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaacaaaagtgtgttgaagcatt 16732  T
Q  239 gaagg 243  Q
    |||||    
T  16731 gaagg 16727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 153; Significance: 4e-81; HSPs: 49)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 39 - 243
Target Start/End: Original strand, 10897291 - 10897494
Alignment:
Q  39 cgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtt 138  Q
    |||||||||||| |||||| |||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||  |||    
T  10897291 cgcatcaagttt-ttattggtgtggttttctcaacgaattcacaacaattggcgcccaccgtggggcaaaggtcaaatcaataatcaggtatcatgggtt 10897389  T
Q  139 tgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaataaaagtgtgttgaagcatt 238  Q
     ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10897390 cgaagtgggatattgaaaagtttaccggtagtaacgacttcaggttgtggaaggtaaagatgagggcaattttaattcaacaaaagtgtgttgaagcatt 10897489  T
Q  239 gaagg 243  Q
    |||||    
T  10897490 gaagg 10897494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 34 - 243
Target Start/End: Complemental strand, 47882787 - 47882580
Alignment:
Q  34 ctcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcat 133  Q
    |||| ||||||||||||  ||||| |||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  47882787 ctccacgcatcaagttt--tattggtgtggttttcacaatgaattcacaacaattggcgcccaccgtggggcaaaggtcaaatcaataaccaggtatcat 47882690  T
Q  134 aagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaataaaagtgtgttgaa 233  Q
      ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  47882689 gggttcgaagtgggatattgaaaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattctaattcaacaaaagtgtgttgaa 47882590  T
Q  234 gcattgaagg 243  Q
    ||||||||||    
T  47882589 gcattgaagg 47882580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 41 - 243
Target Start/End: Complemental strand, 29913848 - 29913647
Alignment:
Q  41 catcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttg 140  Q
    |||||||||| |||||| |||| ||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||| |    
T  29913848 catcaagtttgttattggtgtggttttctcaac-aattcacaacaattggcgcccaccgtggggcaaaggtcaaatcaataatcaggtatcataggttcg 29913750  T
Q  141 aagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaataaaagtgtgttgaagcattga 240  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  29913749 aagtgggatattgaaaagttcaccggtagtaacgacttcgggttgtggaaggtgaagatgagggcaattttaattcaacaaaagtgtgttgaagcattga 29913650  T
Q  241 agg 243  Q
    |||    
T  29913649 agg 29913647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 41 - 243
Target Start/End: Complemental strand, 22625872 - 22625671
Alignment:
Q  41 catcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttg 140  Q
    |||||||||| |||||| |||| ||||| |||||||||||||||||||| || ||| ||||||||||||||||||||||||| ||||||||||  ||| |    
T  22625872 catcaagttt-ttattggtgtggttttctcaacgaattcacaacaattgccgtccaccgtggggcaaaggtcaaatcaataaccaggtatcatgggttcg 22625774  T
Q  141 aagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaataaaagtgtgttgaagcattga 240  Q
    |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  22625773 aagtgggatattgaaaattttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaacaaaagtgtgttgaagcattga 22625674  T
Q  241 agg 243  Q
    |||    
T  22625673 agg 22625671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 34 - 243
Target Start/End: Complemental strand, 10612677 - 10612469
Alignment:
Q  34 ctcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcat 133  Q
    |||| |||||||||||| |||||| |||| ||||| ||||||||||| |||||||| |||||| ||||||||||||||||||||||||| ||||||||||    
T  10612677 ctccacgcatcaagttt-ttattggtgtggttttctcaacgaattcataacaattgacgcccaccgtggggcaaaggtcaaatcaataaccaggtatcat 10612579  T
Q  134 aagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaataaaagtgtgttgaa 233  Q
      ||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||    
T  10612578 gggttcgaagtgggatattgaaaattttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattccaattcaacaaaagtgtgttgaa 10612479  T
Q  234 gcattgaagg 243  Q
    ||||||||||    
T  10612478 gcattgaagg 10612469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 74 - 243
Target Start/End: Original strand, 16457787 - 16457955
Alignment:
Q  74 gaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaac 173  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||  ||| ||||||||||||||| ||||||||||||||||||    
T  16457787 gaattcacaa-aattggcgcccaccgtggggcaaaggtcaaatcaataatcaggtatcatgggttcgaagtgggatattgaaaagtttaccggtagtaac 16457885  T
Q  174 gacttcgggttgtggaaggtaaagatgagggcaattttaattcaataaaagtgtgttgaagcattgaagg 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  16457886 gacttcgggttgtggaaggtaaagatgagggcaattttaattcaacaaaagtgtgttgaagcattaaagg 16457955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 71 - 243
Target Start/End: Original strand, 54188827 - 54188999
Alignment:
Q  71 aacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagt 170  Q
    ||||||||||||||||||||| ||||  |||||||||||||||||||||||| ||||||||||  ||| |||||| |||||||| |||||||||||| ||    
T  54188827 aacgaattcacaacaattggcacccactgtggggcaaaggtcaaatcaataaccaggtatcatgggttcgaagtgagatattgaaaagtttaccggtggt 54188926  T
Q  171 aacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaataaaagtgtgttgaagcattgaagg 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  54188927 aacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaacaaaagtgtgttgaagcattgaagg 54188999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 34 - 236
Target Start/End: Original strand, 6303592 - 6303793
Alignment:
Q  34 ctcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcat 133  Q
    |||| |||||||||||| |||||| |||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||    
T  6303592 ctccacgcatcaagttt-ttattggtgtggttttctcaacgaattcacaacaattggcgcccaccgtggggcaaaggtcaaatcaatagccaggtatcat 6303690  T
Q  134 aagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaataaaagtgtgttgaa 233  Q
      |||  |||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||| ||||||    
T  6303691 gggttccaagtgggatattgaaaagttcaccggtagtaacgacttcgggttgtggaaggtgaagatgagggcaatcttaattcaacaaaagtgcgttgaa 6303790  T
Q  234 gca 236  Q
    |||    
T  6303791 gca 6303793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 34 - 236
Target Start/End: Complemental strand, 10099974 - 10099773
Alignment:
Q  34 ctcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcat 133  Q
    |||| |||||||||||| |||||| |||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||| || |||| ||    
T  10099974 ctccacgcatcaagttt-ttattggtgtggttttctcaacgaattcacaacaattggcgcccaccgtggggcaaaggtcaagtcaataaccaagtataat 10099876  T
Q  134 aagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaataaaagtgtgttgaa 233  Q
      ||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||| ||||||| ||||||    
T  10099875 gggttcgaagtgggatattgaaaagttcaccggtagtaacgacttcgggttgtggaaggtgaagatgaaggcaatcttaattcaacaaaagtgcgttgaa 10099776  T
Q  234 gca 236  Q
    |||    
T  10099775 gca 10099773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 78 - 236
Target Start/End: Complemental strand, 10205548 - 10205390
Alignment:
Q  78 tcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacgact 177  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||| || |||| ||  ||| ||||||||||||||| ||||| ||||||||||||||||    
T  10205548 tcacaacaattggcgcccatcgtggggcaaaggtcaagtcaataaccaagtataatgggttcgaagtgggatattgaaaagttcaccggtagtaacgact 10205449  T
Q  178 tcgggttgtggaaggtaaagatgagggcaattttaattcaataaaagtgtgttgaagca 236  Q
    |||||||||||||||| ||||||| |||||| ||||||||| ||||||| |||||||||    
T  10205448 tcgggttgtggaaggtgaagatgaaggcaatcttaattcaacaaaagtgcgttgaagca 10205390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 200
Target Start/End: Complemental strand, 6065706 - 6065519
Alignment:
Q  10 ttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaag 109  Q
    |||||||| ||||| |||| ||| |||| | |||||||||  |||||| |||| ||||  || ||||||| |||||||||||||||| ||||||||||||    
T  6065706 ttttggttgcttaattatcccttgctccacacatcaagttg-ttattggtgtgattttt-catcgaattcgcaacaattggcgcccaccgtggggcaaag 6065609  T
Q  110 gtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    ||||||  | |||  | ||| |||  ||| |||||||||||||||||||||||||||   |||||| |||||||| |||||||||||||||    
T  6065608 gtcaaagga-taattaagtaccatgggttcgaagtgggatattgagaagtttaccggagataacgatttcgggttatggaaggtaaagatg 6065519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 41 - 200
Target Start/End: Complemental strand, 18099053 - 18098896
Alignment:
Q  41 catcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttg 140  Q
    |||||||||| |||||| |||| ||||  || ||||||| |||||||||||||||| |||||||||| |||||||  | ||| || ||| |||  ||| |    
T  18099053 catcaagtttgttattggtgtgattttt-catcgaattcccaacaattggcgcccaccgtggggcaagggtcaaagga-taatcaagtaccatgggttcg 18098956  T
Q  141 aagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    ||||||||||||||||||||||||||   |||||| || ||||| |||||||||||||||    
T  18098955 aagtgggatattgagaagtttaccggagataacgattttgggttatggaaggtaaagatg 18098896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 53917589 - 53917392
Alignment:
Q  1 tacactctgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgt 100  Q
    |||||| |||||||||| ||| | |||| ||| |||| | |||||||||| |||||  |||| ||||  || ||| ||| ||||||||| |||||| |||    
T  53917589 tacactttgttttggttgcttgactatcccttgctccacacatcaagtttgttattagtgtgattttt-catcgatttcgcaacaattgtcgcccaccgt 53917491  T
Q  101 ggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    |||||||||||||||  | ||| || ||| |||   || |||||||||||||||||||||||||||   |||||| |||||||| |||||||||||||||    
T  53917490 ggggcaaaggtcaaagga-taatcaagtaccatggattcgaagtgggatattgagaagtttaccggagataacgatttcgggttatggaaggtaaagatg 53917392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 10958244 - 10958049
Alignment:
Q  1 tacactctgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgt 100  Q
    |||||| |||||||||| ||| | |||| ||| |||| | |||||||||  |||||| |||| ||||||   |||||||||||||||||| ||||| |||    
T  10958244 tacactttgttttggttgcttgattatctcttgctccacacatcaagttg-ttattggtgtgattttcat--cgaattcacaacaattggtgcccaccgt 10958148  T
Q  101 ggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    ||||||| |||||||  | ||| |  |||||||  |||  ||||||||||||||||||||||||||   |||||| || ||||| |||||||||||||||    
T  10958147 ggggcaagggtcaaagga-taatctagtatcatgggttcaaagtgggatattgagaagtttaccggagataacgattttgggttatggaaggtaaagatg 10958049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 40 - 172
Target Start/End: Complemental strand, 27761884 - 27761753
Alignment:
Q  40 gcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagttt 139  Q
    ||||||||||| |||||| |||||||||||||||||||| |||||||||  | |||| | |||  ||||| |||||||||||| ||| ||||||  |||     
T  27761884 gcatcaagttt-ttattggtgtgtttttcacaacgaatttacaacaatttacacccaccatggaacaaagatcaaatcaataaccagatatcatgggttc 27761786  T
Q  140 gaagtgggatattgagaagtttaccggtagtaa 172  Q
    ||||||||||||||| ||||||| | |||||||    
T  27761785 gaagtgggatattgaaaagtttatcagtagtaa 27761753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 10 - 196
Target Start/End: Original strand, 3315026 - 3315210
Alignment:
Q  10 ttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaag 109  Q
    |||||||| ||| | |||| ||| |||| | ||||||||||||||||| |||||||| | || ||||||| ||||||||||||||||  ||||||||| |    
T  3315026 ttttggttgcttgattatcccttgctccacacatcaagtttattattggtgtgtttt-ctcatcgaattcgcaacaattggcgcccactgtggggcaagg 3315124  T
Q  110 gtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaa 196  Q
    ||||||   |||| || ||| |||  |||  ||||||||||||||||| ||||||||   |||||| || ||||| |||||||||||    
T  3315125 gtcaaa-ggataatcaagtaccatgggttcaaagtgggatattgagaattttaccggagataacgattttgggttatggaaggtaaa 3315210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 73 - 199
Target Start/End: Original strand, 25634282 - 25634407
Alignment:
Q  73 cgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaa 172  Q
    |||||||||||||||||||| ||| |||||||||| |||||||  | ||| || |||||||  ||| |||||||||||||||||||||||||||   |||    
T  25634282 cgaattcacaacaattggcgtccaccgtggggcaagggtcaaagga-taatcaagtatcatgggttcgaagtgggatattgagaagtttaccggagataa 25634380  T
Q  173 cgacttcgggttgtggaaggtaaagat 199  Q
     || || ||||| ||||||||||||||    
T  25634381 tgattttgggttatggaaggtaaagat 25634407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 42990635 - 42990831
Alignment:
Q  1 tacactctgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgt 100  Q
    |||||| |||||||||| | | | |||| ||| |||| | |||||||||| |||||| |||| ||||||   ||||||| |||||||||||||||| |||    
T  42990635 tacactttgttttggttgcctgattatcccttgctccacacatcaagtttgttattggtgtgattttcat--cgaattcgcaacaattggcgcccaccgt 42990732  T
Q  101 ggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    ||||||| |||||||   |||  || |||||||  |||  ||||||||||||| ||||||||||||   |||| | || ||||| |||||||||||||||    
T  42990733 ggggcaagggtcaaa-ggatagtcaagtatcatgggttcaaagtgggatattgggaagtttaccggagataacaattttgggttatggaaggtaaagatg 42990831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 200
Target Start/End: Original strand, 43226420 - 43226609
Alignment:
Q  8 tgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaa 107  Q
    |||||||||| ||| | |||| ||| |||| | |||||||||  |||||| |||| ||| | || ||||||| |||||||||||||||| ||||||||||    
T  43226420 tgttttggttgcttgattatctcttgctccacacatcaagttg-ttattggtgtgattt-ctcatcgaattcgcaacaattggcgcccaccgtggggcaa 43226517  T
Q  108 aggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
     |||||||  | ||| || |||||||  |||  ||||||||||||||||||||||||||   |||||| ||  |||| |||||||||||||||    
T  43226518 gggtcaaagga-taatcaagtatcatgggttcaaagtgggatattgagaagtttaccggagataacgattttcggttatggaaggtaaagatg 43226609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 73 - 200
Target Start/End: Original strand, 5886606 - 5886732
Alignment:
Q  73 cgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaa 172  Q
    ||||||| ||||||||||||| || |||||||||| |||||||  | |||  | ||| |||  |||  |||||||||||||||||||||||||||| |||    
T  5886606 cgaattcgcaacaattggcgctcaccgtggggcaagggtcaaagga-taattaagtaccatgggttcaaagtgggatattgagaagtttaccggtaataa 5886704  T
Q  173 cgacttcgggttgtggaaggtaaagatg 200  Q
    ||| || ||||| |||||||||||||||    
T  5886705 cgattttgggttatggaaggtaaagatg 5886732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 43423391 - 43423194
Alignment:
Q  1 tacactctgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgt 100  Q
    |||||| |||||||||| ||| | |||| ||| |||| | |||||| ||| |||||| |||  ||||  || ||||||| |||||||||||| ||| |||    
T  43423391 tacactttgttttggttgcttgactatcccttgctccacacatcaactttgttattggtgtaattttt-catcgaattcgcaacaattggcgtccaccgt 43423293  T
Q  101 ggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    ||||||| |||||||   |||| || |||||||  ||| ||||||||||||  ||||||||| |||   |||||| || ||||| |||||||||||||||    
T  43423292 ggggcaagggtcaaa-ggataatcaagtatcatgggttcgaagtgggatatcaagaagtttatcggagataacgattttgggttatggaaggtaaagatg 43423194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 200
Target Start/End: Complemental strand, 10621439 - 10621252
Alignment:
Q  10 ttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaag 109  Q
    |||||||| ||||| |||| ||| |||| | |||||||||  |||||| |||| ||||  || ||||||||||||||||||||||||  ||||||||| |    
T  10621439 ttttggttgcttaattatcccttgctccacacatcaagttg-ttattggtgtgattttt-catcgaattcacaacaattggcgcccactgtggggcaagg 10621342  T
Q  110 gtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    ||| ||  | |||  | ||| |||  |||   |||||||||||||||||||||||||   |||||| |||||||| |||||||||||||||    
T  10621341 gtcgaagga-taattaagtaccatgggttcagagtgggatattgagaagtttaccggagataacgatttcgggttatggaaggtaaagatg 10621252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 200
Target Start/End: Original strand, 456251 - 456439
Alignment:
Q  8 tgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaa 107  Q
    |||||||||| ||| | |||| ||| |||| | |||||||||  |||||| |||| ||||||   |||||||||||||||||||||||| ||||||||||    
T  456251 tgttttggttgcttgattatcccttgctccacacatcaagttg-ttattggtgtgattttcat--cgaattcacaacaattggcgcccaccgtggggcaa 456347  T
Q  108 aggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
     |||| ||   ||||  | ||| |||  |||  ||||||||||| ||||||||||||||   |||||| || ||||| |||||||||||||||    
T  456348 gggtcgaa-ggataattaagtaccatgggttcaaagtgggatatcgagaagtttaccggagataacgattttgggttatggaaggtaaagatg 456439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 200
Target Start/End: Original strand, 11168507 - 11168633
Alignment:
Q  73 cgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaa 172  Q
    ||||||| ||||||||| |||||| |||||||||| |||||||  | |||  | ||| |||  |||  ||||||||||||||||||||||||||   |||    
T  11168507 cgaattcgcaacaattgacgcccaccgtggggcaagggtcaaagga-taattaagtaccatgggttcaaagtgggatattgagaagtttaccggagctaa 11168605  T
Q  173 cgacttcgggttgtggaaggtaaagatg 200  Q
    ||| || ||||| |||||||||||||||    
T  11168606 cgattttgggttatggaaggtaaagatg 11168633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 5191987 - 5192182
Alignment:
Q  1 tacactctgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgt 100  Q
    |||||| |||||||||| ||| | |||| ||| |||| | |||||||||  |||||| |||| ||||||   ||||||| ||| |||||||||||| |||    
T  5191987 tacactttgttttggttgcttgattatcccttgctccacacatcaagttg-ttattggtgtgattttcat--cgaattcgcaataattggcgcccaccgt 5192083  T
Q  101 ggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    ||||||| |||| ||  |  |  ||| || |||  |||  ||||||||||||||||||||||||||   |||||| || ||||| |||||||||||||||    
T  5192084 ggggcaagggtcgaaggataattcag-taccatgggttcaaagtgggatattgagaagtttaccggagataacgattttgggttatggaaggtaaagatg 5192182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 85
Target Start/End: Original strand, 3330170 - 3330221
Alignment:
Q  34 ctcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaaca 85  Q
    |||| |||||||||||| |||||| |||| ||||||||||||||||||||||    
T  3330170 ctccgcgcatcaagtttgttattggtgtggttttcacaacgaattcacaaca 3330221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 200
Target Start/End: Original strand, 23633850 - 23633976
Alignment:
Q  73 cgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaa 172  Q
    |||||||||||||||||| | ||| |||||||||| | |||||  | ||| || |||||||  |||  |||||||||||||||||||||||| |   |||    
T  23633850 cgaattcacaacaattggtgtccaccgtggggcaaggatcaaagga-taatcaagtatcatgggttcaaagtgggatattgagaagtttacctgagataa 23633948  T
Q  173 cgacttcgggttgtggaaggtaaagatg 200  Q
     || || ||||| |||||||||||||||    
T  23633949 agatttggggttatggaaggtaaagatg 23633976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 162
Target Start/End: Complemental strand, 1620353 - 1620235
Alignment:
Q  42 atcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttga 141  Q
    ||||||||| |||||| |||| ||||   ||||||||||||| |||||||||||| |||| ||||| | ||||| | |||| || ||| |||| ||| ||    
T  1620353 atcaagttt-ttattggtgtgatttttttaacgaattcacaataattggcgcccaccgtgtggcaaggatcaaa-cgataatcaagtaccataggttcga 1620256  T
Q  142 agtgggatattgagaagttta 162  Q
    ||| |||||||||||| ||||    
T  1620255 agttggatattgagaaattta 1620235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 20031216 - 20031168
Alignment:
Q  39 cgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaat 87  Q
    ||||||| |||| |||||| |||| ||||||||||||||||||||||||    
T  20031216 cgcatcatgttttttattggtgtggttttcacaacgaattcacaacaat 20031168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 162
Target Start/End: Original strand, 27421044 - 27421132
Alignment:
Q  74 gaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagttta 162  Q
    ||||||||||||||| |||||||   |||||||| | ||||||| |||| ||||||||||  |||  || ||||||| |||||||||||    
T  27421044 gaattcacaacaattagcgcccactatggggcaaggatcaaatcgataatcaggtatcatgggttcaaattgggatactgagaagttta 27421132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 228
Target Start/End: Original strand, 53597698 - 53597786
Alignment:
Q  140 gaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaataaaagtgtg 228  Q
    ||||| |||||||||||||||||||||   ||| || || ||||| |||||||||||||||   || |||||||| ||| |||||||||    
T  53597698 gaagtaggatattgagaagtttaccggagataatgattttgggttatggaaggtaaagatggaagcgattttaatacaacaaaagtgtg 53597786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 111
Target Start/End: Original strand, 3323826 - 3323865
Alignment:
Q  72 acgaattcacaacaattggcgcccaacgtggggcaaaggt 111  Q
    ||||||||||||||||||||||||| ||||||| ||||||    
T  3323826 acgaattcacaacaattggcgcccaccgtggggtaaaggt 3323865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 6716939 - 6716998
Alignment:
Q  141 aagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    |||||||||||||||||||| |||||   |||||| |||||||| |||||||| ||||||    
T  6716939 aagtgggatattgagaagttcaccgggcttaacgatttcgggttatggaaggtgaagatg 6716998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 9635865 - 9635806
Alignment:
Q  141 aagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    |||||||||||||||||||| ||||| | |||||| || ||||| |||||||| ||||||    
T  9635865 aagtgggatattgagaagttcaccgggattaacgattttgggttatggaaggtgaagatg 9635806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 29811295 - 29811354
Alignment:
Q  141 aagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    |||||||||||||||||||| ||||| ||||| || || ||||| |||||||| ||||||    
T  29811295 aagtgggatattgagaagttcaccggaagtaatgattttgggttatggaaggtgaagatg 29811354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 37407115 - 37407174
Alignment:
Q  141 aagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    |||||||||||||||||||||||||| | |||||| ||  |||| |||||||| ||||||    
T  37407115 aagtgggatattgagaagtttaccggaattaacgattttaggttatggaaggtgaagatg 37407174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 28101922 - 28101837
Alignment:
Q  10 ttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgccca 96  Q
    |||||||| ||| | |||| ||| |||| | ||||||||||||||||| |||  ||||  || ||||||||||||||||||||||||    
T  28101922 ttttggttgcttgattatcccttgctccacacatcaagtttattattggtgtaattttt-catcgaattcacaacaattggcgccca 28101837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 107
Target Start/End: Original strand, 6716870 - 6716903
Alignment:
Q  74 gaattcacaacaattggcgcccaacgtggggcaa 107  Q
    ||||||||||||||||||||||| ||||||||||    
T  6716870 gaattcacaacaattggcgcccaccgtggggcaa 6716903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 161
Target Start/End: Original strand, 7768977 - 7769054
Alignment:
Q  84 caattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagttt 161  Q
    ||||||||| ||| ||||| |||| | ||||||| |||| || ||| |||  ||||||||||| ||||||||||||||    
T  7768977 caattggcgtccaccgtggagcaaggatcaaatcgataatcaagtaccatgggtttgaagtggaatattgagaagttt 7769054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 11079796 - 11079846
Alignment:
Q  34 ctcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaa 86  Q
    |||| ||||||||||||  ||||| |||| |||||||||||||||||||||||    
T  11079796 ctccacgcatcaagttt--tattggtgtggttttcacaacgaattcacaacaa 11079846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 13893745 - 13893789
Alignment:
Q  39 cgcatcaagtttattattgatgtgtttttcacaacgaattcacaac 84  Q
    ||||||||| || |||||| ||||||||||||||||||||||||||    
T  13893745 cgcatcaaggtt-ttattggtgtgtttttcacaacgaattcacaac 13893789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 29897571 - 29897526
Alignment:
Q  41 catcaagtttattattgatgtgtttttcacaacgaattcacaacaa 86  Q
    |||||||||| |||||| |||| ||||| |||||||||||||||||    
T  29897571 catcaagtttgttattggtgtggttttctcaacgaattcacaacaa 29897526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 110
Target Start/End: Original strand, 32891446 - 32891483
Alignment:
Q  73 cgaattcacaacaattggcgcccaacgtggggcaaagg 110  Q
    |||| ||||||||||||||||||| |||||||||||||    
T  32891446 cgaagtcacaacaattggcgcccaccgtggggcaaagg 32891483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 106
Target Start/End: Original strand, 37407045 - 37407078
Alignment:
Q  73 cgaattcacaacaattggcgcccaacgtggggca 106  Q
    |||||||||||||||||||||||| |||||||||    
T  37407045 cgaattcacaacaattggcgcccaccgtggggca 37407078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 107
Target Start/End: Complemental strand, 43403541 - 43403508
Alignment:
Q  74 gaattcacaacaattggcgcccaacgtggggcaa 107  Q
    ||||||||||||||||||||||| ||||||||||    
T  43403541 gaattcacaacaattggcgcccaccgtggggcaa 43403508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 7762693 - 7762745
Alignment:
Q  141 aagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggt 193  Q
    |||||||||||||||||||| ||||| | |||||| || ||||| ||||||||    
T  7762693 aagtgggatattgagaagttcaccggaattaacgattttgggttatggaaggt 7762745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 106
Target Start/End: Complemental strand, 9635934 - 9635902
Alignment:
Q  74 gaattcacaacaattggcgcccaacgtggggca 106  Q
    ||||||||||||||||||||||| |||||||||    
T  9635934 gaattcacaacaattggcgcccaccgtggggca 9635902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 85
Target Start/End: Complemental strand, 10949164 - 10949115
Alignment:
Q  34 ctcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaaca 85  Q
    |||| ||||||||||||  |||||||||| |||||||| |||||||||||||    
T  10949164 ctccacgcatcaagttt--tattgatgtggttttcacagcgaattcacaaca 10949115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 105
Target Start/End: Original strand, 29811225 - 29811257
Alignment:
Q  73 cgaattcacaacaattggcgcccaacgtggggc 105  Q
    ||||||||||||||||||||||||| |||||||    
T  29811225 cgaattcacaacaattggcgcccaaagtggggc 29811257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 153; Significance: 4e-81; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 40 - 243
Target Start/End: Complemental strand, 22717126 - 22716925
Alignment:
Q  40 gcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagttt 139  Q
    |||||||||||  ||||| |||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||  |||     
T  22717126 gcatcaagttt--tattggtgtggttttctcaacgaattcacaacaattggcgcccaccgtggggcaaaggtcaaatcaataatcaggtatcatgggttc 22717029  T
Q  140 gaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaataaaagtgtgttgaagcattg 239  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  22717028 gaagtgggatattgaaaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaacaaaagtgtgttgaagcattg 22716929  T
Q  240 aagg 243  Q
    ||||    
T  22716928 aagg 22716925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 34 - 243
Target Start/End: Complemental strand, 20054662 - 20054452
Alignment:
Q  34 ctcctcgcatcaagtttatt-attgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatca 132  Q
    |||| |||||||||||| || |||| |||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  20054662 ctccacgcatcaagtttttttattggtgtggttttctcaacgaattcacaacaattggcgcccaccgtggggcaaaggtcaaatcaataaccaggtatca 20054563  T
Q  133 taagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaataaaagtgtgttga 232  Q
    |  ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  20054562 tgggttcgaagtgggatattgaaaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattctaattcaacaaaagtgtgttga 20054463  T
Q  233 agcattgaagg 243  Q
    |||||||||||    
T  20054462 agcattgaagg 20054452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 39 - 243
Target Start/End: Original strand, 2736492 - 2736694
Alignment:
Q  39 cgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtt 138  Q
    ||||||||||||  ||||| |||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||  |||    
T  2736492 cgcatcaagttt--tattggtgtggttttctcaacgaattcacaacaattggcgcccaccgtggggcaaaggtcaagtcaataaccaggtatcatgggtt 2736589  T
Q  139 tgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaataaaagtgtgttgaagcatt 238  Q
     ||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||| ||    
T  2736590 cgaagtgggatattgaaaagttcaccggtagtaacgacttcgggttgtggaaggtgaagatgatggcaattttaattcaacaaaagtgtgttgaagcttt 2736689  T
Q  239 gaagg 243  Q
    |||||    
T  2736690 gaagg 2736694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 34 - 236
Target Start/End: Original strand, 39680326 - 39680528
Alignment:
Q  34 ctcctcgcatcaagtttattattgatgtg-tttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatca 132  Q
    |||| |||||||||||| |||||| |||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||    
T  39680326 ctccacgcatcaagttt-ttattggtgtggtttttctcaacgaattcacaacaattggcgcccaccgtggggcaaaggtcaaatcaatagccaggtatca 39680424  T
Q  133 taagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaataaaagtgtgttga 232  Q
    |  ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||| |||||    
T  39680425 tgggtttgaagtgggatattgaaaagttcaccggtagtaacgacttcgggttgtggaaggtgaagatgagggcaatcttaattcaacaaaagtgcgttga 39680524  T
Q  233 agca 236  Q
    ||||    
T  39680525 agca 39680528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 71 - 243
Target Start/End: Complemental strand, 10942377 - 10942205
Alignment:
Q  71 aacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagt 170  Q
    |||||||||| ||||||||||||||| |||||| ||| | ||||||| ||||||||| | |||  ||| ||| ||||||||||||||||||||| |||||    
T  10942377 aacgaattcaaaacaattggcgcccaccgtgggacaatgatcaaatcgataaacaggcaccatgggttcgaactgggatattgagaagtttacctgtagt 10942278  T
Q  171 aacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaataaaagtgtgttgaagcattgaagg 243  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||| |  |||||||||    
T  10942277 aacgacttcgggttgtggaaggtaaagatgagggtaattttaatccaacaaaagtgtgttaagacattgaagg 10942205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 71 - 243
Target Start/End: Complemental strand, 10948246 - 10948074
Alignment:
Q  71 aacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagt 170  Q
    |||||||||| ||||||||||||||| |||||| ||| | ||||||| ||||||||| | |||  ||| ||| ||||||||||||||||||||| |||||    
T  10948246 aacgaattcaaaacaattggcgcccaccgtgggacaatgatcaaatcgataaacaggcaccatgggttcgaactgggatattgagaagtttacctgtagt 10948147  T
Q  171 aacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaataaaagtgtgttgaagcattgaagg 243  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||| |  |||||||||    
T  10948146 aacgacttcgggttgtggaaggtaaagatgagggtaattttaatccaacaaaagtgtgttaagacattgaagg 10948074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 52 - 204
Target Start/End: Complemental strand, 28458726 - 28458574
Alignment:
Q  52 ttattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatat 151  Q
    |||||| |||| ||||||||| |||||||||||||||||||||||  | ||||||| |||||||||||||| || |||||||   ||  ||||| |||||    
T  28458726 ttattggtgtggttttcacaatgaattcacaacaattggcgcccatggcggggcaagggtcaaatcaataaccaagtatcatggattcaaagtgagatat 28458627  T
Q  152 tgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgaggg 204  Q
    | ||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  28458626 ttagaagtttaccggtagtaatgacttcaggttgtggaaggtaaagatgaggg 28458574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 71 - 173
Target Start/End: Complemental strand, 34575004 - 34574902
Alignment:
Q  71 aacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagt 170  Q
    |||||||||||||||||||||||||| ||||||||| |  |||||||||||| |||||| |||| |||  |||||||||||| | ||||| ||||| |||    
T  34575004 aacgaattcacaacaattggcgcccaccgtggggcacatatcaaatcaataatcaggtaccataggttcaaagtgggatattcataagttcaccggaagt 34574905  T
Q  171 aac 173  Q
    |||    
T  34574904 aac 34574902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 37962874 - 37962790
Alignment:
Q  1 tacactctgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaa 86  Q
    |||||||||||||| |||||||| ||||||||||||| | |||||||||||||||||||||| ||||  || ||||||||||||||    
T  37962874 tacactctgttttgattacttaattatcacttactccacacatcaagtttattattgatgtgatttt-tcatcgaattcacaacaa 37962790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 200
Target Start/End: Complemental strand, 21520593 - 21520420
Alignment:
Q  25 tatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaac 124  Q
    |||||||| |||| | |||||||||| |||||| |||||||| | || ||||||| |||||||||||||||| | |||||||| |||||||   |||| |    
T  21520593 tatcacttgctccacacatcaagtttgttattggtgtgtttt-ctcatcgaattcgcaacaattggcgcccaccctggggcaagggtcaaa-ggataatc 21520496  T
Q  125 aggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
      ||| |||| |||  |||||||||||| |||||||||||||   |||| | || ||||| |||||||||||||||    
T  21520495 cagtaccatatgttcaaagtgggatattaagaagtttaccggagataacaattttgggttatggaaggtaaagatg 21520420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 200
Target Start/End: Complemental strand, 22405813 - 22405656
Alignment:
Q  41 catcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttg 140  Q
    |||||||||| ||||||||||||||| | |   |||||||||||||||||||| || ||||||||||||||||||    ||| || ||| |||  |||      
T  22405813 catcaagtttgttattgatgtgtttt-ctcgttgaattcacaacaattggcgctcaccgtggggcaaaggtcaaa-agttaatcaagtaccatgggttca 22405716  T
Q  141 aagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    |||||||||||||||||||||||| |   |||| | |||||||| |||||||||||||||    
T  22405715 aagtgggatattgagaagtttaccagagataacaatttcgggttatggaaggtaaagatg 22405656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 73 - 200
Target Start/End: Complemental strand, 36560993 - 36560867
Alignment:
Q  73 cgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaa 172  Q
    |||||||||||||||||||||||| |||||||||| |||| ||  | |||  | ||| |||  |||  ||||||||||| ||||||||||||||   |||    
T  36560993 cgaattcacaacaattggcgcccaccgtggggcaagggtcgaagga-taattaagtaccatgggttcaaagtgggatatcgagaagtttaccggagataa 36560895  T
Q  173 cgacttcgggttgtggaaggtaaagatg 200  Q
    ||| |||||||| |||||||||||||||    
T  36560894 cgatttcgggttatggaaggtaaagatg 36560867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 200
Target Start/End: Complemental strand, 35217819 - 35217696
Alignment:
Q  76 attcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacga 175  Q
    ||||||||||||||||||||| |||||||||| | || ||  | |||  | |||||||  |||  ||||||||||| ||||||||||||||   ||||||    
T  35217819 attcacaacaattggcgcccaccgtggggcaaggatcgaagga-taattaagtatcatgggttcaaagtgggatatcgagaagtttaccggagataacga 35217721  T
Q  176 cttcgggttgtggaaggtaaagatg 200  Q
     |||||||| |||||||||||||||    
T  35217720 tttcgggttatggaaggtaaagatg 35217696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 85
Target Start/End: Original strand, 17943816 - 17943867
Alignment:
Q  34 ctcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaaca 85  Q
    |||| |||||||||||| |||||| |||||||||| ||||||||||||||||    
T  17943816 ctccacgcatcaagtttgttattggtgtgtttttctcaacgaattcacaaca 17943867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 201
Target Start/End: Complemental strand, 6264050 - 6263879
Alignment:
Q  27 tcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacag 126  Q
    |||||| |||| | |||||||||| |||||  |||||||| | || ||||||||||||||||||| |||| ||||| |||| |  ||||  | ||| ||     
T  6264050 tcacttgctccacacatcaagtttgttattagtgtgtttt-ctcatcgaattcacaacaattggcacccaccgtggagcaaggaacaaagga-taatcaa 6263953  T
Q  127 gtatcataagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatga 201  Q
    ||| |||  |||  |||||||||||||||||||| |||||   |||||| || ||||| ||||||||||||||||    
T  6263952 gtaccatgggttcaaagtgggatattgagaagttcaccggagataacga-tttgggttatggaaggtaaagatga 6263879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 243
Target Start/End: Original strand, 10445789 - 10445891
Alignment:
Q  141 aagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaataaaagtgtgttgaagcattga 240  Q
    |||||||| || |||||||| ||||| ||||| || || |||||||||||||| ||||||   ||  ||||||  ||| |||||||||| ||||||||||    
T  10445789 aagtgggacatcgagaagttcaccggaagtaatgattttgggttgtggaaggttaagatgcaagcggttttaacacaacaaaagtgtgtagaagcattga 10445888  T
Q  241 agg 243  Q
    |||    
T  10445889 agg 10445891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 243
Target Start/End: Complemental strand, 25403388 - 25403286
Alignment:
Q  141 aagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaataaaagtgtgttgaagcattga 240  Q
    |||||||| || |||||||| ||||| ||||| || ||||||||||||||||| ||||||   ||  |||| |  ||| |||||||||| ||||||||||    
T  25403388 aagtgggacatcgagaagttcaccggaagtaatgatttcgggttgtggaaggttaagatgcaagcggttttgacacaacaaaagtgtgtagaagcattga 25403289  T
Q  241 agg 243  Q
    |||    
T  25403288 agg 25403286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 200
Target Start/End: Complemental strand, 28570268 - 28570139
Alignment:
Q  71 aacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtt-tgaagtgggatattgagaagtttaccggtag 169  Q
    ||||||||||||||||||||||||||  |||||| || | ||||| |||||| || |||||||  |||   |||||||||| | |||||||||||||       
T  28570268 aacgaattcacaacaattggcgcccatggtggggaaaggatcaaa-caataatcaagtatcattggttcaaaagtgggatactaagaagtttaccggaga 28570170  T
Q  170 taacgacttcgggttgtggaaggtaaagatg 200  Q
    ||| || || ||||| |||||||||||||||    
T  28570169 taatgattttgggttatggaaggtaaagatg 28570139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 37170657 - 37170605
Alignment:
Q  34 ctcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaat 87  Q
    |||| |||||||||||| |||||| |||| ||||||||||||||||||||||||    
T  37170657 ctccacgcatcaagttt-ttattggtgtgattttcacaacgaattcacaacaat 37170605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 42923425 - 42923350
Alignment:
Q  10 ttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaa 86  Q
    |||||||| ||| | |||| ||| |||| | |||||||||| |||||| |||||||| |||||||||||||||||||    
T  42923425 ttttggttgcttgattatctcttgctccacacatcaagtttgttattggtgtgtttt-cacaacgaattcacaacaa 42923350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 19504121 - 19504062
Alignment:
Q  141 aagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    ||||||||||||||||||||||||||   ||| || || ||||| |||||||||||||||    
T  19504121 aagtgggatattgagaagtttaccggagataatgattttgggttatggaaggtaaagatg 19504062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 243
Target Start/End: Complemental strand, 28457238 - 28457195
Alignment:
Q  200 gagggcaattttaattcaataaaagtgtgttgaagcattgaagg 243  Q
    ||||| ||||||||||||| |||||||| |||||||||||||||    
T  28457238 gagggaaattttaattcaacaaaagtgtcttgaagcattgaagg 28457195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 106
Target Start/End: Original strand, 11690844 - 11690877
Alignment:
Q  73 cgaattcacaacaattggcgcccaacgtggggca 106  Q
    |||||||||||||||||||||||| |||||||||    
T  11690844 cgaattcacaacaattggcgcccaccgtggggca 11690877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 200
Target Start/End: Complemental strand, 16388215 - 16388142
Alignment:
Q  127 gtatcataagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    ||||||| ||||  |||||||| || |||||||| ||||| ||||| || || |||||||||||||| ||||||    
T  16388215 gtatcatgagttcaaagtgggacatcgagaagttcaccggaagtaatgattttgggttgtggaaggttaagatg 16388142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 42923336 - 42923292
Alignment:
Q  41 catcaagtttattattgatgtgtttttcacaacgaattcacaacaa 86  Q
    |||||||||| |||||| |||||||| |||||||||||||||||||    
T  42923336 catcaagtttgttattggtgtgtttt-cacaacgaattcacaacaa 42923292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 723489 - 723437
Alignment:
Q  141 aagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggt 193  Q
    |||||| ||||||||||||| ||||| |||||||| || ||||| ||||||||    
T  723489 aagtggaatattgagaagttcaccggaagtaacgattttgggttatggaaggt 723437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 109
Target Start/End: Original strand, 10445720 - 10445756
Alignment:
Q  73 cgaattcacaacaattggcgcccaacgtggggcaaag 109  Q
    |||||||||||||||||||| ||| ||||||||||||    
T  10445720 cgaattcacaacaattggcgtccaccgtggggcaaag 10445756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 17849444 - 17849528
Alignment:
Q  1 tacactctgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaaca 85  Q
    |||||| |||||||||| ||| | |||| ||| |||| | |||||||||| |||||| |||| ||||  || |||||||||||||    
T  17849444 tacactttgttttggttgcttgactatcccttgctccacacatcaagtttgttattggtgtgattttttcatcgaattcacaaca 17849528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 105
Target Start/End: Complemental strand, 19504190 - 19504158
Alignment:
Q  73 cgaattcacaacaattggcgcccaacgtggggc 105  Q
    |||||||||||||||||||||||| ||||||||    
T  19504190 cgaattcacaacaattggcgcccaccgtggggc 19504158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 22874436 - 22874519
Alignment:
Q  1 tacactctgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaaca 85  Q
    |||||| |||||| ||| ||| | |||||||| |||| | ||||||||||||||||| |||| ||||  || |||||||||||||    
T  22874436 tacactttgttttagttgcttgactatcacttgctccacacatcaagtttattattggtgtgatttt-tcatcgaattcacaaca 22874519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 40 - 243
Target Start/End: Original strand, 28891052 - 28891253
Alignment:
Q  40 gcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagttt 139  Q
    |||||||||||  ||||| |||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||  |||     
T  28891052 gcatcaagttt--tattggtgtggttttctcaacgaattcacaacaattggcgcccaccgtggggcaaaggtcaaatcaataaccaggtatcatgggttc 28891149  T
Q  140 gaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaataaaagtgtgttgaagcattg 239  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  28891150 gaagtgggatattgaaaagttcaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattctaattcaacaaaagtgtgttgaagcattg 28891249  T
Q  240 aagg 243  Q
    ||||    
T  28891250 aagg 28891253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 34 - 236
Target Start/End: Original strand, 28328188 - 28328390
Alignment:
Q  34 ctcctcgcatcaagtttattattgatgtg-tttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatca 132  Q
    |||| |||||||||||| |||||| |||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||    
T  28328188 ctccacgcatcaagttt-ttattggtgtggtttttctcaacgaattcacaacaattggcgcccaccgtggggcaaaggtcaaatcaatagccaggtatca 28328286  T
Q  133 taagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaataaaagtgtgttga 232  Q
    |  ||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||| |||||    
T  28328287 tgggttcgaagtgggatattgaaaagttcaccggtagtaacgacttcgggttgtggaaggtgaagatgagggcaatcttaattcaacaaaagtgcgttga 28328386  T
Q  233 agca 236  Q
    ||||    
T  28328387 agca 28328390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 34 - 236
Target Start/End: Complemental strand, 16757161 - 16756959
Alignment:
Q  34 ctcctcgcatcaagtttattattgatgtg-tttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatca 132  Q
    |||| |||||||||||| |||||| |||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||    
T  16757161 ctccacgcatcaagttt-ttattggtgtggtttttctcaacgaattcacaacaattggcgcccaccgtggggcaaaggtcaaatcaatagccaggtatca 16757063  T
Q  133 taagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaataaaagtgtgttga 232  Q
    |  ||| ||||||||||||||| ||||| |||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||| ||||||| |||||    
T  16757062 tgggttcgaagtgggatattgaaaagttcaccggtagtaacgacttcaggttgtggaaggtgaagatgagggcaatcttaattcaacaaaagtgcgttga 16756963  T
Q  233 agca 236  Q
    ||||    
T  16756962 agca 16756959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 34 - 243
Target Start/End: Original strand, 21034148 - 21034357
Alignment:
Q  34 ctcctcgcatcaagtttattattgatgtg-tttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatca 132  Q
    |||| |||||||||||| |||||| |||| ||||| ||| ||||| |||| ||||||||||||| |||||||| |||||||||||||||| |||||||||    
T  21034148 ctccacgcatcaagttttttattggtgtggttttttacatcgaatacaca-caattggcgcccaccgtggggcgaaggtcaaatcaataaccaggtatca 21034246  T
Q  133 taagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaataaaagtgtgttga 232  Q
    |  ||| ||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  21034247 tgggttcgaagtgggatattgaaaagtttaccggtagtaaagactttgggttgtggaaggtaaagatgagggcaattctaattcaacaaaagtgtgttga 21034346  T
Q  233 agcattgaagg 243  Q
    |||||| ||||    
T  21034347 agcattaaagg 21034357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 70 - 243
Target Start/End: Original strand, 15944972 - 15945145
Alignment:
Q  70 caacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtag 169  Q
    |||||||||||||||||||||||||||  ||||||||| |||||||||||||| ||||||||||  ||| ||||||||||||||||||||||| ||||||    
T  15944972 caacgaattcacaacaattggcgcccacagtggggcaagggtcaaatcaataaccaggtatcatgggttcgaagtgggatattgagaagtttatcggtag 15945071  T
Q  170 taacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaataaaagtgtgttgaagcattgaagg 243  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||| | |||||| |||||| ||||||||    
T  15945072 taacgacttcgggttatggaatgtaaagatgagggcaattttaattcaacataagtgttttgaagaattgaagg 15945145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 52 - 226
Target Start/End: Complemental strand, 4823584 - 4823410
Alignment:
Q  52 ttattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatat 151  Q
    |||||| |||| ||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||  ||||||||||  ||| ||||||||||||    
T  4823584 ttattggtgtggttttctcaacgaattcacaacaattggcgtccaccgtggggcaaaggtcaaatcaatagccaggtatcatgggttcgaagtgggatat 4823485  T
Q  152 tgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaataaaagtg 226  Q
    ||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||    
T  4823484 tgaaaagttcaccggtagtaacgacttcgggttgtggaaggtgaagatgagggcaatcttaattcaacaaaagtg 4823410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 77 - 243
Target Start/End: Original strand, 33032964 - 33033130
Alignment:
Q  77 ttcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacgac 176  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||  ||| ||||||||||||||| |||||||||| ||||||| ||    
T  33032964 ttcacaacaattggcgcccaccgtggggcaaaggtcaaatcaataaccaggtatcatgggttcgaagtgggatattgaaaagtttaccgttagtaacaac 33033063  T
Q  177 ttcgggttgtggaaggtaaagatgagggcaattttaattcaataaaagtgtgttgaagcattgaagg 243  Q
    |||||||||  ||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||    
T  33033064 ttcgggttgcagaaggtaaagatgagggaaattctaattcaacaaaagtgtgttgaagcattgaagg 33033130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 52 - 243
Target Start/End: Original strand, 30423508 - 30423701
Alignment:
Q  52 ttattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatat 151  Q
    |||||| |||| ||||  ||| |||||||||||| || ||||||| | |||| ||| | |||||||||||| |||||||||| |||||||||||||||||    
T  30423508 ttattggtgtgatttttgcaatgaattcacaacacttagcgcccaccatgggtcaaggttcaaatcaataatcaggtatcatgagtttgaagtgggatat 30423607  T
Q  152 tgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaataaaagtgtgt--tgaagcattgaagg 243  Q
    ||| || ||||||||||||||| |||| |||||  ||||||| ||||||||||||||||||||| || ||||||||||  ||||||||||||||    
T  30423608 tgaaaattttaccggtagtaacaactttgggttacggaaggtgaagatgagggcaattttaattgaacaaaagtgtgttatgaagcattgaagg 30423701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 27 - 200
Target Start/End: Original strand, 21480933 - 21481104
Alignment:
Q  27 tcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacag 126  Q
    ||||||||||| | ||||||||||||||||| |||  ||||  || ||||||||||||||||| ||||||||||||||||| |||||||   |||| ||     
T  21480933 tcacttactccacacatcaagtttattattggtgttattttt-catcgaattcacaacaattgccgcccaacgtggggcaagggtcaaa-ggataatcaa 21481030  T
Q  127 gtatcataagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
     || |||  |||  ||||||||||||||||||||||||||   |||||| || ||||| |||||||||||||||    
T  21481031 ctaccatgggttcaaagtgggatattgagaagtttaccggagataacgattttgggttatggaaggtaaagatg 21481104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 14419118 - 14418924
Alignment:
Q  1 tacactctgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgt 100  Q
    |||||| |||||||||| | | | |||||||| ||||   |||||||||| |||||| |||||||| | || |||||||||||||||||||||||| |||    
T  14419118 tacactttgttttggtttcctgattatcacttgctccatacatcaagtttgttattggtgtgtttt-ctcatcgaattcacaacaattggcgcccaccgt 14419020  T
Q  101 ggggcaaaggtcaaa--tcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaag 197  Q
    ||||||| |||||||  | ||| ||   ||| |||  |||  ||||||||||||||||||||||||||   |||||| || ||||| ||||||||||||    
T  14419019 ggggcaagggtcaaaggttaattaa---gtaccatgggttctaagtgggatattgagaagtttaccggagataacgattttgggttatggaaggtaaag 14418924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 27827397 - 27827593
Alignment:
Q  1 tacactctgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgt 100  Q
    |||||| |||||||||| ||| | |||| ||| |||| | |||||||||| |||||| |||| ||||||   ||||||| |||||||||||||||| |||    
T  27827397 tacactttgttttggttgcttgactatcccttgctccacacatcaagtttgttattggtgtgattttcat--cgaattcgcaacaattggcgcccaccgt 27827494  T
Q  101 ggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    |||| ||||||||||   ||||  | ||| |||  |||  ||||||||||||||||||||||||||   |||||| || || || |||||||||||||||    
T  27827495 ggggtaaaggtcaaa-ggataattaagtaccatgggttcaaagtgggatattgagaagtttaccggagataacgattttggattatggaaggtaaagatg 27827593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 76 - 200
Target Start/End: Original strand, 43080087 - 43080210
Alignment:
Q  76 attcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacga 175  Q
    ||||||||||||||||||||| |||||||||| |||||||  | |||  | ||| |||  |||  ||||||||||| ||||||||||||||   ||||||    
T  43080087 attcacaacaattggcgcccaccgtggggcaagggtcaaagga-taattaagtaccatgggttcaaagtgggatatcgagaagtttaccggagataacga 43080185  T
Q  176 cttcgggttgtggaaggtaaagatg 200  Q
     |||||||| |||||||||||||||    
T  43080186 tttcgggttatggaaggtaaagatg 43080210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 73 - 200
Target Start/End: Original strand, 18811190 - 18811316
Alignment:
Q  73 cgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaa 172  Q
    ||||||| |||||||||||||||| |||||||||| |||||||  | |||  | ||| |||  |||  ||||| ||||||||||||||||||||   |||    
T  18811190 cgaattcgcaacaattggcgcccaccgtggggcaagggtcaaagga-taattaagtaccatgggttcaaagtgagatattgagaagtttaccggagataa 18811288  T
Q  173 cgacttcgggttgtggaaggtaaagatg 200  Q
    ||| |||||||| |||||||||||||||    
T  18811289 cgatttcgggttatggaaggtaaagatg 18811316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 75 - 200
Target Start/End: Complemental strand, 13985678 - 13985553
Alignment:
Q  75 aattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacg 174  Q
    |||||||||||||||||||||| |||||| ||| | ||||||  |||| |||||| ||  ||||  |||||||||||||||||||| || || ||||||     
T  13985678 aattcacaacaattggcgcccaccgtgggccaatgatcaaattgataatcaggtaccacgagttcaaagtgggatattgagaagttcactggaagtaaca 13985579  T
Q  175 acttcgggttgtggaaggtaaagatg 200  Q
    | || ||||| ||||| || ||||||    
T  13985578 attttgggttatggaatgtcaagatg 13985553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 36865946 - 36866023
Alignment:
Q  1 tacactctgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaatt 78  Q
    |||||| |||||||||| ||| | |||||||| |||| | |||||||||| ||||||||||| |||||||||||||||    
T  36865946 tacactttgttttggttgcttgattatcacttgctccacacatcaagtttgttattgatgtggttttcacaacgaatt 36866023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 200
Target Start/End: Original strand, 41383078 - 41383268
Alignment:
Q  8 tgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaa 107  Q
    ||||||| || ||| | |||| ||| |||| | |||||||||| |||||| |||| ||||  || |||| || |||||||||||||||| || |||||||    
T  41383078 tgttttgattgcttgattatctcttgctccacacatcaagtttgttattggtgtggttttt-catcgaactcgcaacaattggcgcccaccgcggggcaa 41383176  T
Q  108 aggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
     |||||||  | |||  | |||||||  |||  ||||||||||||||||||||||||||   |||||| || | ||| |||||||||||||||    
T  41383177 gggtcaaagga-taattaagtatcatgggttcaaagtgggatattgagaagtttaccggagataacgattttgagttatggaaggtaaagatg 41383268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 2468061 - 2467976
Alignment:
Q  1 tacactctgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaatt 88  Q
    |||||| |||||||||| ||| | |||||||| |||| | ||||||||||||||||| |||| ||||  || ||||||||||||||||    
T  2468061 tacactttgttttggttgcttgactatcacttgctccacacatcaagtttattattggtgtgatttt--catcgaattcacaacaatt 2467976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 15069116 - 15069175
Alignment:
Q  141 aagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    ||||||||||||||||||||||||||   |||||| || ||||| |||||||||||||||    
T  15069116 aagtgggatattgagaagtttaccggagataacgattttgggttatggaaggtaaagatg 15069175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 85
Target Start/End: Complemental strand, 26268135 - 26268084
Alignment:
Q  34 ctcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaaca 85  Q
    |||| ||||||||||||||||||| |||| |||||| |||||||||||||||    
T  26268135 ctccacgcatcaagtttattattggtgtggttttcagaacgaattcacaaca 26268084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 15185647 - 15185564
Alignment:
Q  1 tacactctgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtg-tttttcacaacgaattcacaaca 85  Q
    |||||| |||||||||| ||| | |||| |||||||| | |||||||||| ||||||||||| ||||||||  |||||||||||||    
T  15185647 tacactttgttttggttgcttgactatcccttactccacacatcaagtttgttattgatgtgatttttcac--cgaattcacaaca 15185564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 34256248 - 34256189
Alignment:
Q  141 aagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    |||||||||||||||||||| ||||| | |||||| || ||||| |||||||| ||||||    
T  34256248 aagtgggatattgagaagttcaccgggattaacgattttgggttatggaaggtgaagatg 34256189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 15068389 - 15068494
Alignment:
Q  1 tacactctgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgt 100  Q
    |||||| |||||||||| ||| | |||| |||  ||| | |||||||||| || ||| |||| ||||  || ||||||| |||||||||||||||| |||    
T  15068389 tacactttgttttggttgcttgactatcccttgttccacacatcaagtttgttgttggtgtgattttt-catcgaattcgcaacaattggcgcccaccgt 15068487  T
Q  101 ggggcaa 107  Q
    |||||||    
T  15068488 ggggcaa 15068494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 110
Target Start/End: Original strand, 23799850 - 23799888
Alignment:
Q  72 acgaattcacaacaattggcgcccaacgtggggcaaagg 110  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  23799850 acgaattcacaacaattggcgcccatagtggggcaaagg 23799888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 106
Target Start/End: Original strand, 4732014 - 4732047
Alignment:
Q  73 cgaattcacaacaattggcgcccaacgtggggca 106  Q
    |||||||||||||||||||||||| |||||||||    
T  4732014 cgaattcacaacaattggcgcccaccgtggggca 4732047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 17799320 - 17799277
Alignment:
Q  42 atcaagtttattattgatgtgtttttcacaacgaattcacaacaa 86  Q
    ||||||||| |||||| |||| |||||||||||||||||||||||    
T  17799320 atcaagttt-ttattggtgtggttttcacaacgaattcacaacaa 17799277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 85
Target Start/End: Complemental strand, 23179459 - 23179410
Alignment:
Q  34 ctcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaaca 85  Q
    |||| ||||||||||||  ||||| |||| ||||||||||||||||||||||    
T  23179459 ctccacgcatcaagttt--tattggtgtggttttcacaacgaattcacaaca 23179410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 31162617 - 31162685
Alignment:
Q  1 tacactctgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttca 69  Q
    |||||| |||||||||||||||| ||| |||| |||| | |||||||| | |||||| |||| ||||||    
T  31162617 tacactttgttttggttacttaattattacttgctccacacatcaagtattttattggtgtgattttca 31162685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 34 - 243
Target Start/End: Original strand, 28786680 - 28786888
Alignment:
Q  34 ctcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcat 133  Q
    |||| |||||||||||| |||||| |||| ||||| |||||||||||||| |||||||| ||| ||||||||||||||||||||||||| ||||||||||    
T  28786680 ctccacgcatcaagttt-ttattggtgtggttttctcaacgaattcacaataattggcgtccaccgtggggcaaaggtcaaatcaataaccaggtatcat 28786778  T
Q  134 aagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaataaaagtgtgttgaa 233  Q
    | ||| ||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||    
T  28786779 aggttcgaagtgggatattgaaaagtttatcggtagtaacaacttcgggttgtggaaggtaaagatgaaggcaattctaattcaacaaaagtgtgttgaa 28786878  T
Q  234 gcattgaagg 243  Q
    ||||||||||    
T  28786879 gcattgaagg 28786888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 74 - 243
Target Start/End: Original strand, 25445807 - 25445976
Alignment:
Q  74 gaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaac 173  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||  ||| ||||| ||||||||| ||||||||||||||||||    
T  25445807 gaattcacaacaattggcgcccaccgtggggcaaagatcaaatcaataaccaggtatcatgggttcgaagtcggatattgaaaagtttaccggtagtaac 25445906  T
Q  174 gacttcgggttgtggaaggtaaagatgagggcaattttaattcaataaaagtgtgttgaagcattgaagg 243  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  25445907 gacttcgggctgtggaaggtaaagatgagggcaattttaattcaacaaaagtgtgttgaagcattgaagg 25445976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 34 - 243
Target Start/End: Original strand, 10627644 - 10627848
Alignment:
Q  34 ctcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcat 133  Q
    |||| ||||||||||||||||||| |||| ||||||||| |||||||||||||||  | || |    |||||||||||||||| ||||| ||||||||||    
T  10627644 ctccacgcatcaagtttattattggtgtggttttcacaatgaattcacaacaatt--caccgag---ggggcaaaggtcaaattaataaccaggtatcat 10627738  T
Q  134 aagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaataaaagtgtgttgaa 233  Q
      ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||| ||||||||||||||    
T  10627739 gggttcgaagtgggatattgaaaagtttaccggtagtaacgacttcgggttgtggaaggtaaatataagggcaattctaattcaacaaaagtgtgttgaa 10627838  T
Q  234 gcattgaagg 243  Q
     |||||||||    
T  10627839 acattgaagg 10627848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 70 - 243
Target Start/End: Complemental strand, 31782326 - 31782153
Alignment:
Q  70 caacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtag 169  Q
    |||| ||||||||||||||| || ||| |||||||| |||||||||||||||| ||||||| ||   || ||||||| | |||||||||||||| |||||    
T  31782326 caacaaattcacaacaattgacgtccaccgtggggcgaaggtcaaatcaataaccaggtattatggattcgaagtggaacattgagaagtttactggtag 31782227  T
Q  170 taacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaataaaagtgtgttgaagcattgaagg 243  Q
    |||||||||||| |||||||||||||||||||||  |||| |||||||| ||||||||||||||||||||||||    
T  31782226 taacgacttcggattgtggaaggtaaagatgaggataattctaattcaacaaaagtgtgttgaagcattgaagg 31782153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 73 - 201
Target Start/End: Original strand, 27910860 - 27910986
Alignment:
Q  73 cgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaa 172  Q
    |||||||||||||||||||||||| |||||||||  |||||||  | |||  | |||||||  |||| ||||||||||||||||||||||||||   |||    
T  27910860 cgaattcacaacaattggcgcccaccgtggggcag-ggtcaaagga-taattaagtatcatgggtttaaagtgggatattgagaagtttaccggagataa 27910957  T
Q  173 cgacttcgggttgtggaaggtaaagatga 201  Q
    ||| || | ||| ||||||||||||||||    
T  27910958 cgattttgagttatggaaggtaaagatga 27910986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 41 - 200
Target Start/End: Original strand, 6745464 - 6745621
Alignment:
Q  41 catcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttg 140  Q
    |||||||||| |||||| |||||||| | || ||||||| |||||||||||| ||| |||||||||| |||||||   ||||  | ||| |||  |||      
T  6745464 catcaagtttgttattggtgtgtttt-ctcatcgaattcgcaacaattggcgtccaccgtggggcaagggtcaaa-ggataattaagtaccatgggttca 6745561  T
Q  141 aagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    ||| ||||||||||||||||||||||   |||||| || ||||| |||||||||||||||    
T  6745562 aagagggatattgagaagtttaccggagataacgattttgggttatggaaggtaaagatg 6745621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 200
Target Start/End: Complemental strand, 15356702 - 15356575
Alignment:
Q  73 cgaattcacaacaattggcgcccaacgtggggcaaagg-tcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagta 171  Q
    |||||||||||||||||||||||| ||||||||||||| || ||  | |||  | ||| |||  |||  ||||||||||| ||||||||||||||   ||    
T  15356702 cgaattcacaacaattggcgcccaccgtggggcaaagggtcgaagga-taattaagtaccatgggttcaaagtgggatatcgagaagtttaccggagata 15356604  T
Q  172 acgacttcgggttgtggaaggtaaagatg 200  Q
    |||| |||||||| |||||||||||||||    
T  15356603 acgatttcgggttatggaaggtaaagatg 15356575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 200
Target Start/End: Original strand, 23665472 - 23665599
Alignment:
Q  73 cgaattcacaacaattggcgcccaacgtggggcaaagg-tcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagta 171  Q
    |||||||||||||||||||||||| ||||||||||||| || ||  | |||  | ||| |||  |||  ||||||||||| ||||||||||||||   ||    
T  23665472 cgaattcacaacaattggcgcccaccgtggggcaaagggtcgaagga-taattaagtaccatgggttcaaagtgggatatcgagaagtttaccggagata 23665570  T
Q  172 acgacttcgggttgtggaaggtaaagatg 200  Q
    |||| |||||||| |||||||||||||||    
T  23665571 acgatttcgggttatggaaggtaaagatg 23665599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 200
Target Start/End: Complemental strand, 23793115 - 23792988
Alignment:
Q  73 cgaattcacaacaattggcgcccaacgtggggcaaagg-tcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagta 171  Q
    |||||||||||||||||||||||| ||||||||||||| || ||  | |||  | ||| |||  |||  ||||||||||| ||||||||||||||   ||    
T  23793115 cgaattcacaacaattggcgcccaccgtggggcaaagggtcgaagga-taattaagtaccatgggttcaaagtgggatatcgagaagtttaccggagata 23793017  T
Q  172 acgacttcgggttgtggaaggtaaagatg 200  Q
    |||| |||||||| |||||||||||||||    
T  23793016 acgatttcgggttatggaaggtaaagatg 23792988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 200
Target Start/End: Original strand, 10750125 - 10750251
Alignment:
Q  73 cgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaa 172  Q
    |||||||||||||||||||||||| |||||||||| |||| ||   ||||  | ||| |||  |||  ||||||||||| ||||||||||| ||   |||    
T  10750125 cgaattcacaacaattggcgcccaccgtggggcaagggtcgaa-ggataattaagtaccatgggttcaaagtgggatatcgagaagtttactggagataa 10750223  T
Q  173 cgacttcgggttgtggaaggtaaagatg 200  Q
    ||| |||||||| |||||||||||||||    
T  10750224 cgatttcgggttatggaaggtaaagatg 10750251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 85
Target Start/End: Complemental strand, 16093199 - 16093144
Alignment:
Q  31 ttactcctcgcatcaagtttattattgatgt-gtttttcacaacgaattcacaaca 85  Q
    ||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  16093199 ttactccacgcatcaagtttattattggtgtggtttttcacaacgaattcacaaca 16093144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 18467040 - 18467237
Alignment:
Q  1 tacactctgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgt 100  Q
    |||||| ||||||| || ||| | |||| ||| |||| | |||||||||| |||||  |||| ||||  || |||||||||||||||||||||||| |||    
T  18467040 tacactttgttttgattgcttgattatcccttgctccacacatcaagtttgttattagtgtgattttt-catcgaattcacaacaattggcgcccaccgt 18467138  T
Q  101 ggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    || |||| |||||||   ||||  | ||| |||  |||  ||||||||||||||||| ||||||||   |||||| || || || |||||||||||||||    
T  18467139 ggagcaagggtcaaa-ggataattaagtaccatgggttcaaagtgggatattgagaattttaccggagataacgattttggtttatggaaggtaaagatg 18467237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 200
Target Start/End: Original strand, 31543163 - 31543286
Alignment:
Q  76 attcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacga 175  Q
    ||||||||||||||||||||| |||||||||| |||||||   ||||    ||| |||  |||  ||||||||||| |||||||||||| |   ||||||    
T  31543163 attcacaacaattggcgcccaccgtggggcaagggtcaaa-ggataatttagtaccatgggttcaaagtgggatatcgagaagtttaccagagataacga 31543261  T
Q  176 cttcgggttgtggaaggtaaagatg 200  Q
     |||||||| |||||||||||||||    
T  31543262 tttcgggttatggaaggtaaagatg 31543286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 200
Target Start/End: Original strand, 20043365 - 20043538
Alignment:
Q  25 tatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaac 124  Q
    |||||||| |||| |  ||||||||| ||||||||||||||| | ||  |||| ||||||||||| |||| |  ||||||||| ||||| |  | ||| |    
T  20043365 tatcacttgctccacaaatcaagtttgttattgatgtgtttt-ctcattgaatccacaacaattgtcgcctattgtggggcaagggtcagagga-taatc 20043462  T
Q  125 aggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    |  || |||  ||| ||||||||||||||||||||||| |||   |||||| || ||||| |||||||||||||||    
T  20043463 aaataccatgggttcgaagtgggatattgagaagtttatcggagataacgattttgggttatggaaggtaaagatg 20043538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 20505730 - 20505665
Alignment:
Q  41 catcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaa 107  Q
    |||||||||| |||||| |||||||| | ||  ||||||||||||||||||||||| ||||||||||    
T  20505730 catcaagtttgttattggtgtgtttt-ctcattgaattcacaacaattggcgcccaccgtggggcaa 20505665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 36208924 - 36209009
Alignment:
Q  1 tacactctgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaat 87  Q
    |||||| |||||||||| ||| | |||||||| |||  | |||||||||||||||||||||| ||||  || |||||||||||||||    
T  36208924 tacactttgttttggttgcttgattatcacttgctctacacatcaagtttattattgatgtgatttt-tcatcgaattcacaacaat 36209009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 85
Target Start/End: Complemental strand, 11962332 - 11962287
Alignment:
Q  40 gcatcaagtttattattgatgtgtttttcacaacgaattcacaaca 85  Q
    ||||||||||| |||||| |||| ||||||||||||||||||||||    
T  11962332 gcatcaagttttttattggtgtggttttcacaacgaattcacaaca 11962287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 200
Target Start/End: Complemental strand, 34479269 - 34479145
Alignment:
Q  75 aattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacg 174  Q
    ||||| |||||||||||||||| |||||||||| |||| ||  | |||  | ||| |||  |||  ||||||||||| |||||| |||||||   |||||    
T  34479269 aattcgcaacaattggcgcccaccgtggggcaagggtcgaagga-taattaagtaccatgggttcaaagtgggatatcgagaaggttaccggagataacg 34479171  T
Q  175 acttcgggttgtggaaggtaaagatg 200  Q
    | |||||||| |||||||||||||||    
T  34479170 atttcgggttatggaaggtaaagatg 34479145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 18511139 - 18511036
Alignment:
Q  1 tacactctgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgt 100  Q
    |||||| |||||| ||| ||| | |||| ||| |||| | |||||||||| ||||||||||| |||   || ||||||| |||||||||||||||| |||    
T  18511139 tacactttgttttagttgcttgactatcccttgctccacacatcaagtttgttattgatgtgatttat-catcgaattcgcaacaattggcgcccaccgt 18511041  T
Q  101 ggggc 105  Q
    |||||    
T  18511040 ggggc 18511036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 20437205 - 20437249
Alignment:
Q  41 catcaagtttattattgatgtgtttttcacaacgaattcacaaca 85  Q
    ||||||||||||| ||| |||| ||||||||||||||||||||||    
T  20437205 catcaagtttattgttggtgtgattttcacaacgaattcacaaca 20437249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 534185 - 534244
Alignment:
Q  141 aagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    |||||||||||||||||||| ||||| ||||| || || ||||| |||||||| ||||||    
T  534185 aagtgggatattgagaagttcaccggaagtaatgattttgggttatggaaggtgaagatg 534244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 25805955 - 25806014
Alignment:
Q  141 aagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    ||||||||||||||||||||||||||   |||| | || ||||| |||||||||||||||    
T  25805955 aagtgggatattgagaagtttaccggagataacaattttgggttatggaaggtaaagatg 25806014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 27449560 - 27449501
Alignment:
Q  141 aagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    |||||||| || |||||||| ||||| ||||| || ||||||||||||||||| ||||||    
T  27449560 aagtgggacatcgagaagttcaccggaagtaatgatttcgggttgtggaaggttaagatg 27449501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 43598474 - 43598415
Alignment:
Q  141 aagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    |||||||| || |||||||| ||||| ||||| || ||||||||||||||||| ||||||    
T  43598474 aagtgggacatcgagaagttcaccggaagtaatgatttcgggttgtggaaggttaagatg 43598415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 43603966 - 43603907
Alignment:
Q  141 aagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    |||||||| || |||||||| ||||| ||||| || ||||||||||||||||| ||||||    
T  43603966 aagtgggacatcgagaagttcaccggaagtaatgatttcgggttgtggaaggttaagatg 43603907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 43609458 - 43609399
Alignment:
Q  141 aagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    |||||||| || |||||||| ||||| ||||| || ||||||||||||||||| ||||||    
T  43609458 aagtgggacatcgagaagttcaccggaagtaatgatttcgggttgtggaaggttaagatg 43609399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 25804380 - 25804493
Alignment:
Q  1 tacactctgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgt 100  Q
    |||||| |||||||||| ||| | |||| ||| |||| | |||||||||  |||||| |||| | ||  || ||||| | |||||||||||||||| |||    
T  25804380 tacactttgttttggttgcttgattatctcttgctccacacatcaagttg-ttattggtgtgatattttcatcgaatacgcaacaattggcgcccaccgt 25804478  T
Q  101 ggggcaaaggtcaaa 115  Q
    ||||||| |||||||    
T  25804479 ggggcaagggtcaaa 25804493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 106
Target Start/End: Original strand, 534115 - 534148
Alignment:
Q  73 cgaattcacaacaattggcgcccaacgtggggca 106  Q
    |||||||||||||||||||||||| |||||||||    
T  534115 cgaattcacaacaattggcgcccaccgtggggca 534148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 110
Target Start/End: Complemental strand, 13695507 - 13695470
Alignment:
Q  73 cgaattcacaacaattggcgcccaacgtggggcaaagg 110  Q
    |||||||||||||||||||||||| || ||||||||||    
T  13695507 cgaattcacaacaattggcgcccaccgcggggcaaagg 13695470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 106
Target Start/End: Original strand, 31397274 - 31397307
Alignment:
Q  73 cgaattcacaacaattggcgcccaacgtggggca 106  Q
    |||||||||||||||||||||||| |||||||||    
T  31397274 cgaattcacaacaattggcgcccaccgtggggca 31397307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 106
Target Start/End: Complemental strand, 9789032 - 9789000
Alignment:
Q  74 gaattcacaacaattggcgcccaacgtggggca 106  Q
    ||||||||||||||||||||||| |||||||||    
T  9789032 gaattcacaacaattggcgcccaccgtggggca 9789000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 10474251 - 10474191
Alignment:
Q  1 tacactctgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgt 61  Q
    |||||| |||||||||||||| | |||  ||| |||| | |||||||||||||||||||||    
T  10474251 tacactttgttttggttacttgattattccttgctccacacatcaagtttattattgatgt 10474191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 26171188 - 26171252
Alignment:
Q  136 gtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    |||| ||||||||||| |||||||| ||||| | |||||| || ||||| |||||||| ||||||    
T  26171188 gtttaaagtgggatatcgagaagttcaccgggattaacgattttgggttatggaaggtgaagatg 26171252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 106
Target Start/End: Original strand, 29720732 - 29720764
Alignment:
Q  74 gaattcacaacaattggcgcccaacgtggggca 106  Q
    ||||||||||||||||||||||| |||||||||    
T  29720732 gaattcacaacaattggcgcccaccgtggggca 29720764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 42238538 - 42238589
Alignment:
Q  34 ctcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaa 86  Q
    |||| |||||||||||| |||||| |||| |||| ||||||||||||||||||    
T  42238538 ctccacgcatcaagttt-ttattggtgtggtttttacaacgaattcacaacaa 42238589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 34 - 238
Target Start/End: Original strand, 16608 - 16809
Alignment:
Q  34 ctcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcat 133  Q
    |||| |||||||||||| |||||| |||| ||||||   |||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||| |    
T  16608 ctccacgcatcaagttt-ttattggtgtgattttcat--cgaattcacaacaattggcgcccatcgtggggcgaaggtcaaatcaataaccaggtatctt 16704  T
Q  134 aagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaataaaagtgtgttgaa 233  Q
      ||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  16705 gggttcgaagtgagatattgaaaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattctaattcaacaaaagtgtgttgaa 16804  T
Q  234 gcatt 238  Q
    |||||    
T  16805 gcatt 16809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 50374 - 50571
Alignment:
Q  1 tacactctgttttggttacttaagtatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgt 100  Q
    |||||| |||||||||| ||| | |||| ||| |||| | |||||||||| |||||| |||| ||||  || ||||||| |||||||||||||||| |||    
T  50374 tacactttgttttggttgcttgattatcccttgctccacacatcaagtttgttattggtgtgattttt-catcgaattcgcaacaattggcgcccaccgt 50472  T
Q  101 ggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    ||||||| |||||||  | ||| || ||| ||| |||| |||||||||||||||||||||||||||   |||||| || ||||| |||||||||||||||    
T  50473 ggggcaagggtcaaagga-taatcaagtaccatgagttcgaagtgggatattgagaagtttaccggagataacgattttgggttatggaaggtaaagatg 50571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1899 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold1899
Description:

Target: scaffold1899; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 75 - 200
Target Start/End: Original strand, 53 - 177
Alignment:
Q  75 aattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaacg 174  Q
    ||||||||| |||||||||||| |||||||||| |||||||  | ||| || |||||||  |||  ||||||||||||||||||||||| ||  ||||||    
T  53 aattcacaataattggcgcccaccgtggggcaagggtcaaagga-taatcaagtatcatgggttcaaagtgggatattgagaagtttactggaggtaacg 151  T
Q  175 acttcgggttgtggaaggtaaagatg 200  Q
    | || ||||| |||||||||||||||    
T  152 attttgggttatggaaggtaaagatg 177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 41 - 197
Target Start/End: Original strand, 80262 - 80416
Alignment:
Q  41 catcaagtttattattgatgtgtttttcacaacgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttg 140  Q
    |||||||||| |||||| |||||||| | || ||||||| ||||||||| |||||| |||||||||| |||||||  | ||| || |||  ||  ||| |    
T  80262 catcaagtttgttattggtgtgtttt-ctcatcgaattcgcaacaattgtcgcccaccgtggggcaagggtcaaagga-taatcaagtacaatgggttcg 80359  T
Q  141 aagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaag 197  Q
    ||||||||||||||||||||||||||   |||||| || ||||| ||||||||||||    
T  80360 aagtgggatattgagaagtttaccggagataacgattttgggttatggaaggtaaag 80416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 73 - 200
Target Start/End: Complemental strand, 12727 - 12601
Alignment:
Q  73 cgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaa 172  Q
    |||||||||||||||||||||||| |||||||||| |||||||  | |||  | ||| |||  |||  ||||||||||||||||||||||||||   |||    
T  12727 cgaattcacaacaattggcgcccaccgtggggcaagggtcaaagga-taattaagtaccatgggttcaaagtgggatattgagaagtttaccggagataa 12629  T
Q  173 cgacttcgggttgtggaaggtaaagatg 200  Q
    ||| || ||||| |||||||||||||||    
T  12628 cgattttgggttatggaaggtaaagatg 12601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 200
Target Start/End: Original strand, 22552 - 22679
Alignment:
Q  73 cgaattcacaacaattggcgcccaacgtggggcaaagg-tcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagta 171  Q
    |||||||||||||||||||||||| ||||||||||||| || ||  | |||  | ||| |||  |||  ||||||||||| ||||||||||||||   ||    
T  22552 cgaattcacaacaattggcgcccaccgtggggcaaagggtcgaagga-taattaagtaccatgggttcaaagtgggatatcgagaagtttaccggagata 22650  T
Q  172 acgacttcgggttgtggaaggtaaagatg 200  Q
    |||| |||||||| |||||||||||||||    
T  22651 acgatttcgggttatggaaggtaaagatg 22679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1674 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1674
Description:

Target: scaffold1674; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 200
Target Start/End: Complemental strand, 1304 - 1178
Alignment:
Q  73 cgaattcacaacaattggcgcccaacgtggggcaaaggtcaaatcaataaacaggtatcataagtttgaagtgggatattgagaagtttaccggtagtaa 172  Q
    ||||||||||| ||||||| |||| |||||||||| |||||||  | |||  | ||| |||  |||  ||||||||||||||||||||||||||   |||    
T  1304 cgaattcacaaaaattggctcccaccgtggggcaagggtcaaagga-taattaagtaccatgggttcaaagtgggatattgagaagtttaccggagataa 1206  T
Q  173 cgacttcgggttgtggaaggtaaagatg 200  Q
    ||| || ||||| |||||||||||||||    
T  1205 cgattttgggttatggaaggtaaagatg 1178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 243
Target Start/End: Complemental strand, 2245 - 2143
Alignment:
Q  141 aagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaataaaagtgtgttgaagcattga 240  Q
    |||||||| || |||||||| ||||| ||||| || ||||||||||||||||| ||||||   ||  |||| || ||| |||||||||| ||||||||||    
T  2245 aagtgggacatcgagaagttcaccggaagtaatgatttcgggttgtggaaggttaagatgcaagcggttttgatacaacaaaagtgtgtagaagcattga 2146  T
Q  241 agg 243  Q
    |||    
T  2145 agg 2143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 110
Target Start/End: Complemental strand, 2311 - 2277
Alignment:
Q  76 attcacaacaattggcgcccaacgtggggcaaagg 110  Q
    ||||||||||||||||||||| |||||||||||||    
T  2311 attcacaacaattggcgcccaccgtggggcaaagg 2277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0339 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0339
Description:

Target: scaffold0339; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 4378 - 4437
Alignment:
Q  25 tatcacttactcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaaca 85  Q
    |||| |||||||| | |||||||||| ||||||||||| ||||||||||||||||||||||    
T  4378 tatcccttactccacacatcaagtttgttattgatgtg-ttttcacaacgaattcacaaca 4437  T

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Target: scaffold0087 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 243
Target Start/End: Original strand, 37176 - 37278
Alignment:
Q  141 aagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaataaaagtgtgttgaagcattga 240  Q
    |||||||| || || ||||| ||||| ||||| || ||||||||||||||||| ||||||   || ||||| |  ||| |||||||||| ||||||||||    
T  37176 aagtgggacatcgataagttcaccggaagtaatgatttcgggttgtggaaggttaagatgcaagcgattttgacacaacaaaagtgtgtagaagcattga 37275  T
Q  241 agg 243  Q
    |||    
T  37276 agg 37278  T

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Target: scaffold0087; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 106
Target Start/End: Original strand, 37108 - 37140
Alignment:
Q  74 gaattcacaacaattggcgcccaacgtggggca 106  Q
    ||||||||||||||||||||||| |||||||||    
T  37108 gaattcacaacaattggcgcccaccgtggggca 37140  T

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Target: scaffold0016 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 115029 - 115088
Alignment:
Q  141 aagtgggatattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatg 200  Q
    |||||||||||||||||||| ||||| | |||||| || ||||| |||||||| ||||||    
T  115029 aagtgggatattgagaagttcaccggaattaacgattttgggttatggaaggtgaagatg 115088  T

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Target: scaffold1050 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1050
Description:

Target: scaffold1050; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 2969 - 2918
Alignment:
Q  34 ctcctcgcatcaagtttattattgatgtgtttttcacaacgaattcacaacaa 86  Q
    |||| |||||||||||| |||||| |||| ||||| |||||||||||||||||    
T  2969 ctccacgcatcaagttt-ttattggtgtggttttctcaacgaattcacaacaa 2918  T

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Target: scaffold0491 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 106
Target Start/End: Complemental strand, 10971 - 10939
Alignment:
Q  74 gaattcacaacaattggcgcccaacgtggggca 106  Q
    ||||||||||||||||||||||| |||||||||    
T  10971 gaattcacaacaattggcgcccaccgtggggca 10939  T

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