View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19381_low_36 (Length: 253)

Name: NF19381_low_36
Description: NF19381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19381_low_36
NF19381_low_36
[»] chr1 (3 HSPs)
chr1 (127-207)||(51987336-51987416)
chr1 (1-105)||(51987440-51987546)
chr1 (1-45)||(3854025-3854069)
[»] chr8 (1 HSPs)
chr8 (16-45)||(6744577-6744606)
[»] chr5 (1 HSPs)
chr5 (1-46)||(22166682-22166727)


Alignment Details
Target: chr1 (Bit Score: 77; Significance: 8e-36; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 127 - 207
Target Start/End: Complemental strand, 51987416 - 51987336
Alignment:
Q  127 gcttttttattaggaatccaattattaagattaggaaaaatcctcaaaattatttaaaatgaccatgcactaaaggtcaaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  51987416 gcttttttattaggaatccaattattaagattaggaaaaatcctcaaaattatttaaaatgaccatgcactaaagctcaaa 51987336  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 51987546 - 51987440
Alignment:
Q  1 gatgaattattctcggtgtttaatctaattttattttggcttcttcnnnnnnnnt--tgacattttattttaattgttttgattgaaacaatttaaataa 98  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||    
T  51987546 gatgaattactctcggtgtttaatctaatttcattttggcttcttcaaaaaaaaaaatgacattttattttaattgttttgattgaaacaatttaaataa 51987447  T
Q  99 aaagtag 105  Q
    |||||||    
T  51987446 aaagtag 51987440  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 3854069 - 3854025
Alignment:
Q  1 gatgaattattctcggtgtttaatctaattttattttggcttctt 45  Q
    ||||||||| |||||||| ||||||||| ||||||||||||||||    
T  3854069 gatgaattactctcggtgcttaatctaaatttattttggcttctt 3854025  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 45
Target Start/End: Original strand, 6744577 - 6744606
Alignment:
Q  16 gtgtttaatctaattttattttggcttctt 45  Q
    ||||||||||||||||||||||||||||||    
T  6744577 gtgtttaatctaattttattttggcttctt 6744606  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 22166682 - 22166727
Alignment:
Q  1 gatgaattattctcggtgtttaatctaattttattttggcttcttc 46  Q
    ||||||||| ||| | ||||||||||||||| ||||||||||||||    
T  22166682 gatgaattactcttgttgtttaatctaatttcattttggcttcttc 22166727  T

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