View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19381_low_38 (Length: 239)
Name: NF19381_low_38
Description: NF19381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19381_low_38 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 12 - 222
Target Start/End: Complemental strand, 28604953 - 28604743
Alignment:
| Q |
12 |
ttatactcaccttgactacgcaatcatggaagagatttctaacccacgaaattgctgtgtttccatgcttgttatacaattcattgacttgttgcttgat |
111 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28604953 |
ttatactcaccttgactatgcaatcatggaagagatttctaacccacgaaattgctgtgtttccatgcttgttatacaattcattgacttgttgcttgat |
28604854 |
T |
|
| Q |
112 |
gatctcttctgcttttgggcagctcatggagtagtagtttaactgtagttggcttatccctatgcataaatacatgacattaataatgaaagaagaaatt |
211 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28604853 |
gatctcttctgcttttgggcagctcttggagtagtagtttacctgtagttggcttatccctatgcataaatacatgacattaataatgaaagaagaaatg |
28604754 |
T |
|
| Q |
212 |
gtacaatatct |
222 |
Q |
| |
|
||||||||||| |
|
|
| T |
28604753 |
gtacaatatct |
28604743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 12 - 173
Target Start/End: Complemental strand, 28663021 - 28662860
Alignment:
| Q |
12 |
ttatactcaccttgactacgcaatcatggaagagatttctaacccacgaaattgctgtgtttccatgcttgttatacaattcattgacttgttgcttgat |
111 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||| |||||| ||||||||| |
|
|
| T |
28663021 |
ttatactcacctcgactatgcaatcatggaagagatttctaacccacgaaaccgctgtgtttccatgctcgttatacagttcaatgactttttgcttgat |
28662922 |
T |
|
| Q |
112 |
gatctcttctgcttttgggcagctcatggagtagtagtttaactgtagttggcttatcccta |
173 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| || ||||| |||||| |||||| |
|
|
| T |
28662921 |
gatctcttctgcttttgggcagctcttggagtagtagttcaattgtagctggcttttcccta |
28662860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 12 - 150
Target Start/End: Complemental strand, 28635331 - 28635193
Alignment:
| Q |
12 |
ttatactcaccttgactacgcaatcatggaagagatttctaacccacgaaattgctgtgtttccatgcttgttatacaattcattgacttgttgcttgat |
111 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||| |||||| ||||| |||||||||||||||| |||||| | |||| |||||||||| ||||| |
|
|
| T |
28635331 |
ttatactcacgttgactgtgcaatcatggaagagatttcgaacccaggaaatggctgtgtttccatgctggttatatagttcagtgacttgttgtttgat |
28635232 |
T |
|
| Q |
112 |
gatctcttctgcttttgggcagctcatggagtagtagtt |
150 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
28635231 |
tatctcttctgcttttgggcagctgttggagtagtagtt |
28635193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 28654620 - 28654458
Alignment:
| Q |
16 |
actcaccttgactacgcaatcatggaagagatttctaacccacgaaattgctgtgtttccatgcttgttatacaattcattgacttgttgcttgatgatc |
115 |
Q |
| |
|
|||||| ||||| | |||||||||||||||||||| || ||||||||| |||||| |||| || || ||| | |||| ||||||| |||||||| ||| |
|
|
| T |
28654620 |
actcacattgaccatgcaatcatggaagagatttcgaagccacgaaatggctgtgcttccttgatt---atatagttcagtgacttgctgcttgattatc |
28654524 |
T |
|
| Q |
116 |
tcttctgcttttgggcagctcatggagtagtagtttaactgtagttggcttatccctatgcataaa |
181 |
Q |
| |
|
||||| ||| |||||||||| ||||||||||||| | ||| || |||||| ||||| | |||||| |
|
|
| T |
28654523 |
tcttcggctcttgggcagctggtggagtagtagttcagctggagctggcttttccctgtacataaa |
28654458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University