View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19381_low_4 (Length: 600)
Name: NF19381_low_4
Description: NF19381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19381_low_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 541; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 2 - 600
Target Start/End: Complemental strand, 37899294 - 37898696
Alignment:
| Q |
2 |
gaggagcatcacagagaaccgtacacgccgtcatcaataaacctgccaaaatagagatggaaccnnnnnnnnnngtgagtagattatataaatagagcag |
101 |
Q |
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| T |
37899294 |
gaggagcaacatagagaaccgtacacgccgtcatcaataaacctgccaaaatagagatggaaccaaaaaaaaaagtgagtagattatataaatagagctg |
37899195 |
T |
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| Q |
102 |
taagtgagcttctacttcaatgcttcaaattcaattgctaatgttttcaattccatgacgatggaaacaccaatgctcaaagtgacactaaaaagctact |
201 |
Q |
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| T |
37899194 |
taagtgagcttctacttcaatgcttcaaattcaattgctaatgttttcaattccatgacgatggaaacaccaatgctcaaagtgacactaaaaagctact |
37899095 |
T |
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| Q |
202 |
taaattcagtccataccaattaaaataacagtaaaacaaaaacaaaagatatcttaataccagccagacaaaggacaagtaaaaattcagtttgttaatc |
301 |
Q |
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| T |
37899094 |
taaattcagtccataccaattaaaataacagtaaaacaaaaacaaaagatatctaaataccagccagacaaaggacaagtaaaaattcagtttgttaatc |
37898995 |
T |
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| Q |
302 |
aagtaactaagtaagggaaatcacataagagaggtgacgaggcagtaaacaaatgcttgtaaagaaatttgaattcataaaaaatgacatcctttgaaat |
401 |
Q |
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| T |
37898994 |
aagtaactaagtaagggaaatcacataagagaggtgacgaggcagtaaacaaatgcttgtaaagaaatttgaattcataaaaaatgacatcctttgaaat |
37898895 |
T |
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| Q |
402 |
aaaaactaacgagtctaccatgagaagaaagacacttgcagcctttctgagcagtggagtagccaagaaaaacaacaatccaatttacgcttattacagg |
501 |
Q |
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| T |
37898894 |
aaaaactaacgattctaccatgagaagaaagacacttgcagcctttctgagcagtggagtagccaagaaaaacaacaatccaatttacgcttattacagg |
37898795 |
T |
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| Q |
502 |
acgttttcggacacaaccaaaacctcgtagaaaggtagagtcgggtggttgtttggaaataatagtatagcaaacaatataattgagtgatgaggaaac |
600 |
Q |
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| T |
37898794 |
acgttttcggacacaaccaaaacctcgtagaaaggtagagtcaggtggttgtttggaaataatagtataacaaacaatataattgagtgatgaggaaac |
37898696 |
T |
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Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 132 - 200
Target Start/End: Original strand, 29150966 - 29151032
Alignment:
| Q |
132 |
tcaattgctaatgttttcaattccatgacgatggaaacaccaatgctcaaagtgacactaaaaagctac |
200 |
Q |
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| T |
29150966 |
tcaatggctaatgttttcaattctaggaagatggaagcaccaatgctcaaa--gacacttaaaagctac |
29151032 |
T |
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