View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19381_low_5 (Length: 599)
Name: NF19381_low_5
Description: NF19381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19381_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 262 - 583
Target Start/End: Original strand, 43057508 - 43057831
Alignment:
| Q |
262 |
aaatagatgaaatacatgtcaactaaatataattaatctctcatgcactaacatgtttgtaagacatcagatgaataacctactaaattgctcacaacct |
361 |
Q |
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| T |
43057508 |
aaatagatgaaatacatgtcaactatatataattaatctctcatgcactaacatgtttataagacatcagatgaataacctactaaattgctcacaactt |
43057607 |
T |
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| Q |
362 |
cacccacgagacaagttaaaaagatgtgccgctactattctcggcaacttcaaacaatttacaagagaaccaagtagtatgaaacc--tacccacaccat |
459 |
Q |
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| T |
43057608 |
cacccacgagacaagttaaaaagatgtgccactactattctcggcaacttcaaacaatttacaagagaaccaagttgtatgaaacctatacccacaccat |
43057707 |
T |
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| Q |
460 |
tctaccaaatggaattcctattaaatcctctcaccatatatctatctactaaaccatagttatgatatcaattttcaaactccaacgtcattttcctaat |
559 |
Q |
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| T |
43057708 |
tctaccaaatggaattcctattaaatcctctcaccatatatctatctactaaaccatagttatgatatcaattttcaaactccaacgtcattttcctaat |
43057807 |
T |
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| Q |
560 |
aatacaaaattaaacatttgtaat |
583 |
Q |
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| T |
43057808 |
aatacaaaattaaacatgtgtaat |
43057831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 30 - 217
Target Start/End: Original strand, 43057302 - 43057490
Alignment:
| Q |
30 |
aaaatgaaaaataaaatagctaaacaatatgtgagcatgaaagtagtgaaaaagacacggattgatgaattttgaatagttgggttgtaaacaccactta |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43057302 |
aaaatgaaaaataaaatagctaaacaatatgtgagcatgaaagtagtgaaaaagacacggattgatgaattttgaatagttgggttgtaaacaccactta |
43057401 |
T |
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| Q |
130 |
tctaagtcataactaagatattttcc-nnnnnnnctctgttctaacaccaaaacaagatttaacgactagtaactgattagcataacac |
217 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43057402 |
tctaagtcataactaagatattttccttttttttctctgttctaacaccaaaacaagatttaacgactagtaactgattagcatgacac |
43057490 |
T |
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