View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19381_low_6 (Length: 581)
Name: NF19381_low_6
Description: NF19381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19381_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 528; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 17 - 564
Target Start/End: Complemental strand, 2690165 - 2689618
Alignment:
| Q |
17 |
cagagagcaatggaaattgtcgatgctttcattcatgatttgagtcccaacactgaggctttgagatgcatacaaatagggatgttatgtgtgcaagatt |
116 |
Q |
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|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2690165 |
cagagagcaatggaaattgtggatgcttgcattcatgatttgagtcccaacactgaggctttgagatgcatacaaatagggatgttatgtgtgcaagatt |
2690066 |
T |
|
| Q |
117 |
cagcatctcatagaccaaacatgtccgatattgtttcgatgcttgaaagtgaagcaacaactcttcccttacctacgcagcctttggatacttccatcaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2690065 |
cagcatctcatagaccaaacatgtccgatattgtttcgatgcttgagagtgaagcaacaactcttcccttacctacgcagcctttggatacttccatcaa |
2689966 |
T |
|
| Q |
217 |
aagatctgtggacagagagtgttacaaggatggtgttgatatttcaaatgatctcgcagtcacaacggtagaagggagatagaactgatgccctttctga |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2689965 |
aagatctgtggacagagagtgttacaaggatggtgttgatatttcaaatgatcttgcagtcacaacggtagaagggagatagaactgatgccctttctga |
2689866 |
T |
|
| Q |
317 |
gctattttcgtttgcatacacacggctcatagttatgttgatttttcctctttttgcctcttgaattggaagtatagtcttgaaattaaatacattctat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2689865 |
gctattttcgtttgcatacacacggctcatagttatgttgatttttcctctttttgcctcttgaattggaagtatagtcttgaaattaaatacattctat |
2689766 |
T |
|
| Q |
417 |
attgataggccgcaagagcacgattatatagtgtaacaaaaatatctttcccacgagcattttgtattgaatatcaatctcttttcactatgataattaa |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2689765 |
attgataggccgcaagagcacgattatatagtgtaacaaaaatatctttcccacgagcattttgtattgaatatcaatctcttttcactatgataattaa |
2689666 |
T |
|
| Q |
517 |
gtgtggtaaaaactaagttagtgatataataattctactgtattaagt |
564 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2689665 |
gtgtggtaaaaactaagctagtgatataataattctactgtattaagt |
2689618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 74 - 392
Target Start/End: Complemental strand, 2697914 - 2697596
Alignment:
| Q |
74 |
gctttgagatgcatacaaatagggatgttatgtgtgcaagattcagcatctcatagaccaaacatgtccgatattgtttcgatgcttgaaagtgaagcaa |
173 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||| | | ||||||| |||||||||| |
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| T |
2697914 |
gctttgagatgtatacaaatagggatgttatgtgtgcaagattcagcatctcatagaccaaatatgtccaaagttgtgttgttgcttgagagtgaagcaa |
2697815 |
T |
|
| Q |
174 |
caactcttcccttacctacgcagcctttggatacttccatcaaaagatctgtggacagagagtgttacaaggatggtgttgatatttcaaatgatctcgc |
273 |
Q |
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| ||||||||| ||||||||||||||||| ||||||||| | ||||||| ||| ||||||| ||||| ||||||| ||||| ||||||||||||| | |
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| T |
2697814 |
cgactcttcccatacctacgcagcctttgattacttccatgaggagatctgaggatagagagttttacatggatggtcttgattgttcaaatgatctcac |
2697715 |
T |
|
| Q |
274 |
agtcacaacggtagaagggagatagaactgatgccctttctgagct-----attttcgtttgcatacacacggctcatagttatgttgatttttcctctt |
368 |
Q |
| |
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||| |||| ||||| ||||||||| || | ||| |||||||||| | ||||| |||| ||||| |||||||||| |||||| |||||||||| |
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| T |
2697714 |
agttacaatggtagcagggagataaaattaatgtcctttctgagttgagtcatttttatttg----cacacagctcatagttttgttga-ttttcctctt |
2697620 |
T |
|
| Q |
369 |
tttgcctcttgaattggaagtata |
392 |
Q |
| |
|
|||||||||||||||| ||||||| |
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| T |
2697619 |
tttgcctcttgaattgaaagtata |
2697596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 9e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 81 - 511
Target Start/End: Complemental strand, 14519269 - 14518829
Alignment:
| Q |
81 |
gatgcatacaaatagggatgttatgtgtgcaagattcagcatctcatagaccaaacatgtccgatattgtttcgatgcttgaaagtgaagcaacaactct |
180 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||| ||||| | ||||||||| ||| || ||| ||||| |
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| T |
14519269 |
gatgcatacaaatagggatgttatgtgtgcaagatttagcatctcgacgaccaaagatgtccgaaattgtgttgatgcttgagagtaaatcaattactct |
14519170 |
T |
|
| Q |
181 |
tcccttacctacgcagcctttggatacttccatcaaaagatctgtggacagagagtgttacaaggatggtgttgatatttcaaatgatctcgcagtcaca |
280 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||| || ||||||||| | |||| ||| ||||||| |||||||||||| || ||||| |
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|
| T |
14519169 |
tcccttacctatgcagcctttgattacttccatcaaaagaaacgttaacagagagtctcccaagaatgctgttgatgactcaaatgatctcacaatcaca |
14519070 |
T |
|
| Q |
281 |
acggtagaagggagatag----aactgatgccctttctgagcta------ttttcgtttgcatacacacggctcatagttatgttgatttttcct-cttt |
369 |
Q |
| |
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| |||||||||||||||| | | ||||| ||||| |||| |||| ||||||||||||| ||||||| || ||||| |||||| | ||| |
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| T |
14519069 |
atggtagaagggagatagatttagttaatgccatttctctgctatttttgtttttgtttgcatacaca-tgctcatacttttgttgctttttcatgtttt |
14518971 |
T |
|
| Q |
370 |
ttgcctcttgaattggaagtatagtcttgaaattaaatacattctatattgataggccgcaagagcacgattatatagtgtaacaaaaatatctttccca |
469 |
Q |
| |
|
|||| || |||||| || ||| ||||| ||||||||||||| |||||||||||| |||||| ||||| |||||| |||| | ||| |||| || ||| |
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| T |
14518970 |
ttgcttcaagaattgaaaatattatcttggaattaaatacattgtatattgataggtcgcaagtgcacggttatatcgtgtgattaaattatcgtttcca |
14518871 |
T |
|
| Q |
470 |
cgagcattttgtattgaatatcaatctcttttcactatgata |
511 |
Q |
| |
|
|| | ||||| ||||||||||| | |||||||| |||||||| |
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| T |
14518870 |
cggggattttatattgaatatctaactcttttcgctatgata |
14518829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 74 - 186
Target Start/End: Original strand, 36291110 - 36291222
Alignment:
| Q |
74 |
gctttgagatgcatacaaatagggatgttatgtgtgcaagattcagcatctcatagaccaaacatgtccgatattgtttcgatgcttgaaagtgaagcaa |
173 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| | || | |||||||||||||||||||| |
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| T |
36291110 |
gctttgagatgcatccacatagggatgttatgtgtgcaagattcagcatctcatagaccaaacatgtcctcagtggtgttgatgcttgaaagtgaagcaa |
36291209 |
T |
|
| Q |
174 |
caactcttccctt |
186 |
Q |
| |
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||||||||||||| |
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|
| T |
36291210 |
caactcttccctt |
36291222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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