View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19382_high_1 (Length: 962)
Name: NF19382_high_1
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19382_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 95; Significance: 6e-46; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 367 - 487
Target Start/End: Original strand, 24942002 - 24942119
Alignment:
| Q |
367 |
aggtgtttgtttgagtacgtatagagacttggatgagtcactatgtgagttttagaggaaagttacttcaaaaacgcatatgagcatattgacatatgtt |
466 |
Q |
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| T |
24942002 |
aggtgtttgtttgag---gtatagagacttggatgtgtcactatgtgagttttagaggaaagttacttccaaaacgcatatgagcatattgatatatgtt |
24942098 |
T |
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| Q |
467 |
gttctattagttacatgttgc |
487 |
Q |
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| T |
24942099 |
gttctattagttacatgttgc |
24942119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 652 - 685
Target Start/End: Complemental strand, 20515628 - 20515595
Alignment:
| Q |
652 |
catctctggaagcatcttcaatcattcaacttct |
685 |
Q |
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| T |
20515628 |
catctctggaagcatcttcaatcattcaacttct |
20515595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 543 - 617
Target Start/End: Complemental strand, 11299456 - 11299382
Alignment:
| Q |
543 |
cattgacagaataagcaccttaccagactctatactctgccacatcctttcattcctctcaaccaaaacctccat |
617 |
Q |
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| T |
11299456 |
cattgacagactaagcaatctaccagactctgtactctgccacatcttctccttcctcccaaccaaaaccaccat |
11299382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 553 - 656
Target Start/End: Complemental strand, 35190036 - 35189933
Alignment:
| Q |
553 |
ataagcaccttaccagactctatactctgccacatcctttcattcctctcaaccaaaacctccatatcaacaatctctctcgtttctcgccgctggcgcc |
652 |
Q |
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| T |
35190036 |
ataaacaccctaccagactcactcctctgccatatactctccttcctcccaaccaaaatcaccgtcacaacaatccctctcgtctctcgccgttggcgcc |
35189937 |
T |
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| Q |
653 |
atct |
656 |
Q |
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|||| |
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| T |
35189936 |
atct |
35189933 |
T |
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