View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19382_high_102 (Length: 206)

Name: NF19382_high_102
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19382_high_102
NF19382_high_102
[»] chr1 (3 HSPs)
chr1 (94-192)||(5715633-5715731)
chr1 (1-36)||(5715761-5715796)
chr1 (94-186)||(17744378-17744470)
[»] chr7 (5 HSPs)
chr7 (96-189)||(44832207-44832300)
chr7 (96-146)||(32199604-32199654)
chr7 (96-168)||(32073124-32073196)
chr7 (129-190)||(20609197-20609258)
chr7 (129-190)||(20611686-20611747)
[»] chr2 (2 HSPs)
chr2 (94-192)||(17373650-17373748)
chr2 (94-192)||(37621877-37621975)
[»] chr8 (1 HSPs)
chr8 (96-148)||(32540315-32540367)
[»] chr4 (7 HSPs)
chr4 (108-192)||(26547098-26547182)
chr4 (96-149)||(5290697-5290750)
chr4 (107-172)||(20628736-20628801)
chr4 (107-189)||(31853492-31853574)
chr4 (96-149)||(20635561-20635614)
chr4 (98-167)||(47385600-47385668)
chr4 (107-167)||(29134459-29134519)
[»] chr5 (3 HSPs)
chr5 (96-149)||(20362939-20362992)
chr5 (96-170)||(8788086-8788162)
chr5 (107-147)||(23033144-23033184)
[»] chr3 (4 HSPs)
chr3 (107-147)||(29565013-29565053)
chr3 (96-133)||(36619618-36619655)
chr3 (96-144)||(10352516-10352564)
chr3 (96-168)||(35937502-35937574)


Alignment Details
Target: chr1 (Bit Score: 79; Significance: 4e-37; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 5715731 - 5715633
Alignment:
Q  94 agatattttaactttgtaatttgatattattcttattttttaccttataatatacacatggtctaaaaaagtgatatgatgatttaattttttcatgat 192  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||    
T  5715731 agatattttaaccttgtaatttgatattattcttatttttgaccttataatatacatatggtctaaaaaagtgatctaatgatttaattttttcatgat 5715633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 5715796 - 5715761
Alignment:
Q  1 ggtcatttaaaatacgtagaatttaggattaattgt 36  Q
    |||||| |||||||||||||||||||||||||||||    
T  5715796 ggtcatgtaaaatacgtagaatttaggattaattgt 5715761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 186
Target Start/End: Original strand, 17744378 - 17744470
Alignment:
Q  94 agatattttaactttgtaatttgatattattcttattttttaccttataatatacacatggtctaaaaaagtgatatgatgatttaatttttt 186  Q
    |||||||||||  ||||||||||| ||||||||||||||| | |  ||||||||| |  | |||| ||||||||| | |||| | ||||||||    
T  17744378 agatattttaatcttgtaatttgagattattcttatttttgaaccaataatatacgcgggatctacaaaagtgatctaatgaatgaatttttt 17744470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 96 - 189
Target Start/End: Original strand, 44832207 - 44832300
Alignment:
Q  96 atattttaactttgtaatttgatattattcttattttttaccttataatatacacatggtctaaaaaagtgatatgatgatttaattttttcat 189  Q
    |||||||||||||||||||||| ||| ||||||||||||||||| ||||||||   ||||| ||||||||||| |   |||| |||||||||||    
T  44832207 atattttaactttgtaatttgagattcttcttattttttaccttttaatatacgtgtggtccaaaaaagtgatctagagattgaattttttcat 44832300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 32199654 - 32199604
Alignment:
Q  96 atattttaactttgtaatttgatattattcttattttttaccttataatat 146  Q
    |||||||||| ||||||||||||||||||||||||||||||| | ||||||    
T  32199654 atattttaaccttgtaatttgatattattcttattttttaccctctaatat 32199604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 168
Target Start/End: Original strand, 32073124 - 32073196
Alignment:
Q  96 atattttaactttgtaatttgatattattcttattttttaccttataatatacacatggtctaaaaaagtgat 168  Q
    ||||| ||||| | ||| |||| ||| ||||||||||| ||||| |||||||||| ||||| |||||||||||    
T  32073124 atattctaactctctaaattgagattcttcttatttttgaccttgtaatatacacgtggtccaaaaaagtgat 32073196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 190
Target Start/End: Original strand, 20609197 - 20609258
Alignment:
Q  129 ttttttaccttataatatacacatggtctaaaaaagtgatatgatgatttaattttttcatg 190  Q
    |||||||||||||||||||| | ||||| ||||||||||| |   |||| ||||||||||||    
T  20609197 ttttttaccttataatatacgcgtggtccaaaaaagtgatctagagattgaattttttcatg 20609258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 190
Target Start/End: Original strand, 20611686 - 20611747
Alignment:
Q  129 ttttttaccttataatatacacatggtctaaaaaagtgatatgatgatttaattttttcatg 190  Q
    |||||||||||||||||||| | ||||| ||||||||||| |   |||| ||||||||||||    
T  20611686 ttttttaccttataatatacgcgtggtccaaaaaagtgatctagagattgaattttttcatg 20611747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 17373748 - 17373650
Alignment:
Q  94 agatattttaactttgtaatttgatattattcttattttttaccttataatatacacatggtctaaaaaagtgatatgatgatttaattttttcatgat 192  Q
    ||||||| ||||| |||||||||| ||| ||| ||||||| |||||||||||||| |  |||| ||||||||||| |   |||| ||||||||||||||    
T  17373748 agatattctaactctgtaatttgagattcttcgtatttttgaccttataatatacgcgaggtccaaaaaagtgatctagagattgaattttttcatgat 17373650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 37621975 - 37621877
Alignment:
Q  94 agatattttaactttgtaatttgatattattcttattttttaccttataatatacacatggtctaaaaaagtgatatgatgatttaattttttcatgat 192  Q
    ||||||||||||  |||||||||| ||| |||||| |||| ||| ||||||||||   ||||| ||||||||||| |  | ||| ||||||||||||||    
T  37621975 agatattttaaccatgtaatttgagattcttcttacttttgaccctataatatacgtgtggtccaaaaaagtgatctagttattgaattttttcatgat 37621877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 32540367 - 32540315
Alignment:
Q  96 atattttaactttgtaatttgatattattcttattttttaccttataatatac 148  Q
    |||||||| | ||||||||||||||||||||||||||| ||||||||| ||||    
T  32540367 atattttagccttgtaatttgatattattcttatttttgaccttataacatac 32540315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 192
Target Start/End: Complemental strand, 26547182 - 26547098
Alignment:
Q  108 tgtaatttgatattattcttattttttaccttataatatacacatggtctaaaaaagtgatatgatgatttaattttttcatgat 192  Q
    |||||||||||||| || |||||||||||  |||||||||| | ||||| ||||||||||| |   |||| ||||||||||||||    
T  26547182 tgtaatttgatattctttttattttttacactataatatacgcgtggtccaaaaaagtgatgtagagattgaattttttcatgat 26547098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 5290697 - 5290750
Alignment:
Q  96 atattttaactttgtaatttgatattattcttattttttaccttataatataca 149  Q
    |||||||||  ||||||||||| ||| ||||||||||||||| |||||||||||    
T  5290697 atattttaaacttgtaatttgagattcttcttattttttaccatataatataca 5290750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 172
Target Start/End: Original strand, 20628736 - 20628801
Alignment:
Q  107 ttgtaatttgatattattcttattttttaccttataatatacacatggtctaaaaaagtgatatga 172  Q
    ||||||||||||||| || |||||||||||| | |||||||||| | ||| |||| ||||||||||    
T  20628736 ttgtaatttgatattcttattattttttaccctgtaatatacacttagtccaaaagagtgatatga 20628801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 189
Target Start/End: Original strand, 31853492 - 31853574
Alignment:
Q  107 ttgtaatttgatattattcttattttttaccttataatatacacatggtctaaaaaagtgatatgatgatttaattttttcat 189  Q
    ||||||||| | ||| |||||||||||  || |||||||||| | ||||| ||||||||||| | | |||| |||||||||||    
T  31853492 ttgtaatttaaaattcttcttatttttggccctataatatactcttggtccaaaaaagtgatctaaagattgaattttttcat 31853574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 20635561 - 20635614
Alignment:
Q  96 atattttaactttgtaatttgatattattcttattttttaccttataatataca 149  Q
    |||||||||| ||||||||||||||| |  |||||||||||| |||||| ||||    
T  20635561 atattttaaccttgtaatttgatattctcattattttttaccctataatgtaca 20635614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 167
Target Start/End: Original strand, 47385600 - 47385668
Alignment:
Q  98 attttaactttgtaatttgatattattcttattttttaccttataatatacacatggtctaaaaaagtga 167  Q
    ||||||| ||||| |||||||||| |||||| |||||| |||||||||||| | | || |||||||||||    
T  47385600 attttaattttgtgatttgatattcttctta-tttttatcttataatatactcgtagtttaaaaaagtga 47385668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 167
Target Start/End: Complemental strand, 29134519 - 29134459
Alignment:
Q  107 ttgtaatttgatattattcttattttttaccttataatatacacatggtctaaaaaagtga 167  Q
    ||||||||| ||||| ||||||||||| ||| |||||||| ||  | ||||||||||||||    
T  29134519 ttgtaatttaatatttttcttatttttgaccatataatattcatgtagtctaaaaaagtga 29134459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 20362939 - 20362992
Alignment:
Q  96 atattttaactttgtaatttgatattattcttattttttaccttataatataca 149  Q
    |||||||||| ||||||||||| ||| ||||||||||| ||| |||||||||||    
T  20362939 atattttaaccttgtaatttgagattcttcttatttttgaccatataatataca 20362992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 170
Target Start/End: Original strand, 8788086 - 8788162
Alignment:
Q  96 atattttaactttgtaatttgatattatt--cttattttttaccttataatatacacatggtctaaaaaagtgatat 170  Q
    ||||| |||||||||||||||| ||| ||  ||||||||| ||| ||||||||||   ||||| |||||||||||||    
T  8788086 atattctaactttgtaatttgagatttttttcttatttttgaccctataatatacgtgtggtccaaaaaagtgatat 8788162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 23033144 - 23033184
Alignment:
Q  107 ttgtaatttgatattattcttattttttaccttataatata 147  Q
    ||||||||||||||| ||||||||||||||  |||||||||    
T  23033144 ttgtaatttgatattcttcttattttttacgctataatata 23033184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 29565053 - 29565013
Alignment:
Q  107 ttgtaatttgatattattcttattttttaccttataatata 147  Q
    ||||||||||||||| ||||||||||||||| |||||||||    
T  29565053 ttgtaatttgatattcttcttattttttaccctataatata 29565013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 133
Target Start/End: Original strand, 36619618 - 36619655
Alignment:
Q  96 atattttaactttgtaatttgatattattcttattttt 133  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  36619618 atattttaactatgtaatttgatattcttcttattttt 36619655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 10352516 - 10352564
Alignment:
Q  96 atattttaactttgtaatttgatattattcttattttttaccttataat 144  Q
    ||||||||||| | |||||||| ||| ||||||||||||||| ||||||    
T  10352516 atattttaactatataatttgagattcttcttattttttaccatataat 10352564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 168
Target Start/End: Original strand, 35937502 - 35937574
Alignment:
Q  96 atattttaactttgtaatttgatattattcttattttttaccttataatatacacatggtctaaaaaagtgat 168  Q
    |||||||||  ||||||||||||||| ||||||||||| ||  ||||||||||   ||||  |||||||||||    
T  35937502 atattttaatcttgtaatttgatattcttcttatttttaactctataatatacgtgtggttcaaaaaagtgat 35937574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University