View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19382_high_11 (Length: 528)
Name: NF19382_high_11
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19382_high_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 19 - 502
Target Start/End: Complemental strand, 32203691 - 32203208
Alignment:
| Q |
19 |
agtttaacaccattgtacttaagagcatttaccacagccaaaatcttggtttggctcttaaatcctttcttttctatttccttattaacatttacatgaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
32203691 |
agtttaacaccattgtacttaagagcatttaccacagccaaaatcttggtttggctcttaaatcctttcttttctatttccttatttacatttacatgaa |
32203592 |
T |
|
| Q |
119 |
tacctcttccttctccttcattaagcccctcaactttgagccgtctggccaatacttccccaacaacagcagctgcttttgcattgcagggccggccaca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
32203591 |
tacctcttccttctccttcattaagcccctcaactttgagccgtctggccaatacttccccaacaacagcagctgcttttgcattgcaggaccggccaca |
32203492 |
T |
|
| Q |
219 |
ctcgagagactgcttgatgtcatgttctgcggtggatgatgttgctactattcgtccgctgtttcgatctaccacatttgcagtaatgtactttattgat |
318 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32203491 |
ctcgagagactgcttgatgtcatgttcagcggtggatgatgttgctactattcgtccgctgtttcgatctaccacatttgcagtaatgtactttattgat |
32203392 |
T |
|
| Q |
319 |
atgaacaatctcagcacataccgtttcgttaaagtcattcttcaatcatctgataagtgggtttaaaatcaagcacataaatgataaatcagtttcctac |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32203391 |
atgaacaatctcagcacataccgtttcgttaaagtcattcttcaatcatctgataagtgggtttaaaatcaagcacataaatgataaatcagtttcctac |
32203292 |
T |
|
| Q |
419 |
aaacagaaaggaaaaaacaatgacagaataggtaatgtcccacatattaaaggaattcaggtacttgatacacagaggttaatt |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32203291 |
aaacagaaaggaaaaaacaatgacagaataggtaatgtcccacatattaaaggaattcaggtacttgatacacagaggttaatt |
32203208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 19 - 502
Target Start/End: Original strand, 35566302 - 35566784
Alignment:
| Q |
19 |
agtttaacaccattgtacttaagagcatttaccacagccaaaatcttggtttggctcttaaatcctttcttttctatttccttattaacatttacatgaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
35566302 |
agtttaacaccattgtacttaagagcatttaccacagccaaaatcttggtttggctcttaaatcctttcttttctatttccttatttacatttacatgaa |
35566401 |
T |
|
| Q |
119 |
tacctcttccttctccttcattaagcccctcaactttgagccgtctggccaatacttccccaacaacagcagctgcttttgcattgcagggccggccaca |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
35566402 |
tacctcttccttctccttcattaagcccctcaactttgagccgtctggccaatacttccccaacaacagcagctgcttttgcatt-cagggccggccaca |
35566500 |
T |
|
| Q |
219 |
ctcgagagactgcttgatgtcatgttctgcggtggatgatgttgctactattcgtccgctgtttcgatctaccacatttgcagtaatgtactttattgat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35566501 |
ctcgagagactgcttgatgtcatgttctgcggtggatgatgttgctactattcgtccgctgtttcgatctaccacatttgcagtaatgtactttattgat |
35566600 |
T |
|
| Q |
319 |
atgaacaatctcagcacataccgtttcgttaaagtcattcttcaatcatctgataagtgggtttaaaatcaagcacataaatgataaatcagtttcctac |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35566601 |
atgaacaatctcagcacataccgtttcgttaaagtcattcttcaatcatctgataagtgggtttaaaatcaagcacataaatgataaatcagtttcctac |
35566700 |
T |
|
| Q |
419 |
aaacagaaaggaaaaaacaatgacagaataggtaatgtcccacatattaaaggaattcaggtacttgatacacagaggttaatt |
502 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35566701 |
gaacagaaaggaaaaaacaatgacagaataggtaatgtcccacatattaaaggaattcaggtacttgatacacagaggttaatt |
35566784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University