View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19382_high_13 (Length: 526)
Name: NF19382_high_13
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19382_high_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 469; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 15 - 507
Target Start/End: Original strand, 55696590 - 55697082
Alignment:
| Q |
15 |
gataattctatgtgcagtcaaatcaaaaccagtttctttccagattgcaggtatgttcaccaagtaccaaaactagagccaatatgttcttgggtaatga |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55696590 |
gataattctatgtgcagtcaaatcaaaaccagtttctttccagattgcaggtatgttcaccaagtaccaaaactagagccaatatgttcttgggtaatga |
55696689 |
T |
|
| Q |
115 |
ctttaagtcgagcttgcatgacaggcatagatgaataagctgggaaacacagccgacaaaagcatgtatgagatgaaggaaaacgatccccagattcatg |
214 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| || |||||||| |
|
|
| T |
55696690 |
ctttaagacgagcttgcatgacaggcatagatgaataagctgggaaacacagccgataaaagcatgtatgagatgaaggaagacgatcaccggattcatg |
55696789 |
T |
|
| Q |
215 |
ggacttgtaaatgtggagacgggaacccaaaccacgaaagccttcaactggtaaatatttcacagacgtccaaaagaaaagaagaaccttcttttcttca |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55696790 |
ggacttgtaaatgtggagacgggaacccaaaccacgaaagccttcaactggtaaatatttcacagacgtccaaaagaaaagaagaaccttcttttcttca |
55696889 |
T |
|
| Q |
315 |
gctgtcattctccccactatctgccaagttttttcaaacagactgttaaaatatgaaatgtaaaaactgagcagcatctcttatcaaatcttgatatata |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55696890 |
gctgtcattctccccactatctgccaagttttttcaaacagactgttaaaatatgaaatgtaaaaactgagcagcatctcttatcaaatcttgatatata |
55696989 |
T |
|
| Q |
415 |
aagttgttagaaaaacattgcagaacaaaatatctgagcacgcaataacaacctagattaagagatcctggataaattaaatatagcttgagg |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55696990 |
aagttgttagaaaaacattgcagaacaaaatatctgaggacgcaataacaacctagattaagagatcctggataaattaaatatagcttgagg |
55697082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 507
Target Start/End: Original strand, 55697407 - 55697436
Alignment:
| Q |
478 |
gatcctggataaattaaatatagcttgagg |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
55697407 |
gatcctggataaattaaatatagcttgagg |
55697436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 6e-23; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 236 - 347
Target Start/End: Original strand, 9235226 - 9235337
Alignment:
| Q |
236 |
ggaacccaaaccacgaaagccttcaactggtaaatatttcacagacgtccaaaagaaaagaagaaccttcttttcttcagctgtcattctccccactatc |
335 |
Q |
| |
|
||||| ||| ||||| || |||||||||||||||| ||||||||| ||||||||||| |||||||| ||||||| || |||| ||||||||| || ||| |
|
|
| T |
9235226 |
ggaactcaagccacggaaaccttcaactggtaaatgtttcacagatgtccaaaagaacagaagaactttcttttgctctgctgacattctcccgacgatc |
9235325 |
T |
|
| Q |
336 |
tgccaagttttt |
347 |
Q |
| |
|
|||||||||||| |
|
|
| T |
9235326 |
tgccaagttttt |
9235337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 255 - 345
Target Start/End: Original strand, 9246830 - 9246920
Alignment:
| Q |
255 |
ccttcaactggtaaatatttcacagacgtccaaaagaaaagaagaaccttcttttcttcagctgtcattctccccactatctgccaagttt |
345 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||| ||||| |||||||||||||||| || |||| ||||||||| || ||||||||||||| |
|
|
| T |
9246830 |
ccttcaactggtaaatgtttcacagatgtccagaagaacagaagaaccttcttttgctctgctggcattctcccaacgatctgccaagttt |
9246920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 241 - 348
Target Start/End: Original strand, 9254973 - 9255080
Alignment:
| Q |
241 |
ccaaaccacgaaagccttcaactggtaaatatttcacagacgtccaaaagaaaagaagaaccttcttttcttcagctgtcattctccccactatctgcca |
340 |
Q |
| |
|
|||||||| | || |||| ||||||||||| ||||||||| ||||||||||| |||||||||||| ||| || |||| |||||| || || |||||||| |
|
|
| T |
9254973 |
ccaaaccatggaaacctttaactggtaaatgtttcacagatgtccaaaagaacagaagaaccttcctttgctctgctgacattcttccaacgatctgcca |
9255072 |
T |
|
| Q |
341 |
agtttttt |
348 |
Q |
| |
|
|||||||| |
|
|
| T |
9255073 |
agtttttt |
9255080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 309
Target Start/End: Original strand, 9264993 - 9265047
Alignment:
| Q |
255 |
ccttcaactggtaaatatttcacagacgtccaaaagaaaagaagaaccttctttt |
309 |
Q |
| |
|
||||| |||||||||| |||||| || ||||||||||| |||||||||||||||| |
|
|
| T |
9264993 |
ccttcgactggtaaatgtttcactgatgtccaaaagaacagaagaaccttctttt |
9265047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University