View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19382_high_14 (Length: 526)
Name: NF19382_high_14
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19382_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 152; Significance: 3e-80; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 12 - 175
Target Start/End: Complemental strand, 14223593 - 14223430
Alignment:
| Q |
12 |
acagaccaaataaatttgtcaaagtacaaattctacggagccgtctgcaacattgactagaaatgttttaccctatttaatatagatataagagcccaaa |
111 |
Q |
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| T |
14223593 |
acagaccaaataaatttgtcaaagtacaaattctacggagccgtctgcaacattgactagaaatgttttaccctatttaatatagatttaagagcccaac |
14223494 |
T |
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| Q |
112 |
tccaattgatcaaaagaaaaggatttgcagtctatgttttcattcaaaatataaaattttacaa |
175 |
Q |
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| T |
14223493 |
tccaattgatcaaaagaaaaggaattgcagtctatgttttcattcaaaatataaaattttacaa |
14223430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 381 - 501
Target Start/End: Complemental strand, 14227783 - 14227662
Alignment:
| Q |
381 |
taaattgtctcctttctaagcattgattctgtaatatgaaacatcatctggtaaaataaggcatgttttgtatct-ttttcttgtacgctaacgaaagac |
479 |
Q |
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| T |
14227783 |
taaattgtcctcttcctaaggattgatattgtagaatgaaacatcatctggtaaaataaggcaggttttgtatctgtggtcttgtacattgacgaaagac |
14227684 |
T |
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| Q |
480 |
attacacaaaaatggttgcaaa |
501 |
Q |
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| T |
14227683 |
attatacggaaatggatgcaaa |
14227662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 268 - 341
Target Start/End: Complemental strand, 14227905 - 14227833
Alignment:
| Q |
268 |
tttattaacatgaccaggtcgaatgcgtaaggaaaccttgcaggcataggttcaatgaacttgttctcaaggga |
341 |
Q |
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| T |
14227905 |
tttattaacatgatcaggtcaaatgcggaaggaa-cttcgcaggcataggttcaataaacttgttctcaaggga |
14227833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 242
Target Start/End: Complemental strand, 14228004 - 14227927
Alignment:
| Q |
165 |
aaattttacaaggtgcttcaatacaagctttgaatagtcctgattaggtatgaataaactaggccaaaagaatacaag |
242 |
Q |
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| T |
14228004 |
aaatttgacaaggagcttcaaaactagcttagaccagtcctgattaaaaacgaataaacgaggccaaaagaatacaag |
14227927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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