View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19382_high_15 (Length: 518)
Name: NF19382_high_15
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19382_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 478; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 1 - 502
Target Start/End: Original strand, 6836032 - 6836532
Alignment:
| Q |
1 |
ttcgtatttggattggattgttttctttctcgggtttcttactcacactacgtattattatttggggaattagtgatttcgtcaaaaaaggtgaatgtaa |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6836032 |
ttcgtatttggattggattgttttctttctcgggtttcttactcacactgcgtattattatttggggaattagtgatttcgtcaaaaaaggtgaatgtaa |
6836131 |
T |
|
| Q |
101 |
aaaggcaaccactccaatgatgattgcacccgcttgatttgattgtataatctttaattacgactataattagtgtgttaggtgttgaatatatgtaaga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6836132 |
aaaggcaaccactccaatgatgattgcacccgcttgatttgattgtacaatctttaattacgactataattagtgtgttaggtgttgaatatatgtaaga |
6836231 |
T |
|
| Q |
201 |
tatgtatgtttaaatgttatccttgtaaggactggtatttattttttaataagctagcaaatgttagtgattatagtttgtttgctagggtgaaggaaaa |
300 |
Q |
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| T |
6836232 |
tatgtatgtttaaatgttatccttgtaaggactggtatttattttttaataagctagcaaatgttagtgattatagtttgtttgctagggtgaaggaaag |
6836331 |
T |
|
| Q |
301 |
atatttgcggcagagaatatatttagcccaaattaaccacttcatttggcatgtatttgtgtggaagattgtcatttatatgtaatataaacgtgtttat |
400 |
Q |
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| T |
6836332 |
atatttgcggcagagaatatatttagcccaaattaaccacttcatttggcatgtatttgtgtggaagattgtcatttatatgtaatataaacgtgtttat |
6836431 |
T |
|
| Q |
401 |
gtttttgtttgctctgtactcttttttctttgccggattcttctagcaatgtttttaatgatcgtagatgttaagttcctttaattattttagtttgagt |
500 |
Q |
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| T |
6836432 |
gtttttgtttgctctgtactcttttttctttgccggattcttctagcaatgtttttaatga-ggtagatgttaagttcctttaattattttagtttgagt |
6836530 |
T |
|
| Q |
501 |
at |
502 |
Q |
| |
|
|| |
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|
| T |
6836531 |
at |
6836532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 5 - 280
Target Start/End: Original strand, 6632875 - 6633158
Alignment:
| Q |
5 |
tatttggattggattgttttctttctcgggtttcttactcacactacgtattattatttggggaattagtgatttcgtcaaaaaaggtgaatgtaaaaag |
104 |
Q |
| |
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||||||||| ||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||| ||| ||||| |||||||| |
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| T |
6632875 |
tatttggatgggattgttttccttctcgggtttgttactcacactgcgtattattatttggggaattagtgatttcctcaataaacgtgaaggtaaaaag |
6632974 |
T |
|
| Q |
105 |
gcaacc---actccaatgatgattgcacccgcttgatttgattgtataatctttaattacgactataattagtgtgttaggtgttgaatatatgtaagat |
201 |
Q |
| |
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| T |
6632975 |
gcaaacagaactccaacaaagactccaaccccttgatttaatcgtacaatctttaatttcgactataattagtgtgttagatgttgagtatatgtaagat |
6633074 |
T |
|
| Q |
202 |
atg--tatgtttaaatgttatccttgtaaggactggta-----tttatttttt--aataagctagcaaatgttagtgattatagtttg |
280 |
Q |
| |
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||| ||||||||||| ||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||| |
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| T |
6633075 |
atgtatatgtttaaattttatccttgtaaggactggtatattttttatttttttcaata----agcaaatgttagtgattatagtttg |
6633158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 331 - 503
Target Start/End: Original strand, 6633223 - 6633393
Alignment:
| Q |
331 |
aattaaccacttcatttggcatgtatttgtgtggaagattgtcatttatatgtaatataaacgtgtttatgtttttgtttgctctgtactcttttttctt |
430 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||| ||| | ||||||||||| |||||||||||||||||||||||||||||||||||| | |
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| T |
6633223 |
aattaaccacttcatttgctatgtatttgtgtggaa-attgtattttttgtgtaatataaatgtgtttatgtttttgtttgctctgtactcttttttcct |
6633321 |
T |
|
| Q |
431 |
tgccggattcttctagcaatgtttttaatgatcgtagatgttaagttcctttaattattttagtttgagtatt |
503 |
Q |
| |
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| T |
6633322 |
tgctggattcttctagcaaggtttttaatga-ggcagatgttaagtttccttaattattttagtttgggtatt |
6633393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 100 - 228
Target Start/End: Original strand, 6636358 - 6636486
Alignment:
| Q |
100 |
aaaaggcaaccactccaatgatgattgcacccgcttgatttgattgtataatctttaattacgactataattagtgtgttaggtgttgaatatatgtaag |
199 |
Q |
| |
|
|||||| |||||||||| || |||| ||| | ||||||||||| || ||||||||||||||||||||||||||||| || | |||| |||||||||| |
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| T |
6636358 |
aaaaggaaaccactccaccgaagattccacactcttgatttgatcgtgcaatctttaattacgactataattagtgtgctatgcattgagtatatgtaag |
6636457 |
T |
|
| Q |
200 |
atatgtatgtttaaatgttatccttgtaa |
228 |
Q |
| |
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|| ||||||||||| | |||||||||||| |
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|
| T |
6636458 |
atttgtatgtttaatttttatccttgtaa |
6636486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 6 - 188
Target Start/End: Original strand, 6808098 - 6808287
Alignment:
| Q |
6 |
atttggattggattgttttctttctcgggtttcttactcacactacgtattattatttggggaattagtgatttcg---tcaaaaaaggtgaatgtaaa- |
101 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||| || |||||| |||||||| ||||| ||||| | |||| ||||||||| || || |
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| T |
6808098 |
atttggattggattgttttccatctcgggtttgttactcactctgcgtattcttatttggacaattaatgattactatctcaataaaggtgaaggtcaat |
6808197 |
T |
|
| Q |
102 |
---aaggcaaccactccaatgatgattgcacccgcttgatttgattgtataatctttaattacgactataattagtgtgttaggtgttga |
188 |
Q |
| |
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|||| ||| |||||| || |||| ||| | ||||||||||| ||| |||||| |||||||||||||||||||||| |||||||||| |
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| T |
6808198 |
caaaaggaaacaactccaccgaagattccactctcttgatttgatcgtacaatcttcaattacgactataattagtgtgctaggtgttga |
6808287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 334 - 424
Target Start/End: Original strand, 6808420 - 6808512
Alignment:
| Q |
334 |
taaccacttcatttggcatgtatttgtgtggaagattgtc---atttatatgtaatataaacgtgtttatgtttttgtttgctctgtactcttt |
424 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||| ||||| |||||||||||||||||| ||| ||||||||||||||| |||||||||||| |
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|
| T |
6808420 |
taaccacttcatttggcatgtacttgtgtgtaag-ttgtctttatttatatgtaatataaatgtggttatgtttttgtttgatctgtactcttt |
6808512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 327 - 390
Target Start/End: Original strand, 6636597 - 6636663
Alignment:
| Q |
327 |
cccaaattaaccacttcatttggcatgtatttgtgtggaagattgtc----atttatatgtaatataa |
390 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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|
| T |
6636597 |
cccaagttaaccacttcatttggcatgtatttgtgtggaag-ttgtcttttatttatatgtaatataa |
6636663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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